Clone Sequence Records
BO12455.3prime Sequence
904 bp (809 high quality bases) assembled on 2006-05-08
> BO12455.3prime
ATGGTCTAGAAAGCTTGCTTGTTCAATGTCAATATTTACGTTGTGGATGG
ATATATATTCTTCTTGTATGTCATCGCGTTTTATAGAAACCGTGATTTTT
TTTACTAGGCAACAATTTGAAAGGCATAAATTTAATACGAATTCGATGGT
AAATATTTGACTGCTTTCACACATAAAATCAGGCCTAGTAGCCTGCACCT
GCATGTGGCACATCCCATCAAGTAGATTTCCGCACGTTGGATTTACTATT
ACAGATTGACATACAGTTTTCACTATCCATTTTTGAGGAGCTTCCTTTGT
AAAGTTAAATCTGGGCGAAAGCCGAAGGTTAAAAAAAATTTTACTTGGTT
TAATTAAATCAAGAGGCAATGCTTTAACTATATTATTTTCCGTAGGCTTT
TGTGTATCTTGTGGCGCATCAATTTCACTAGCGGACGCTATTTGTCTGAA
ATCTAAGCCAAACGGTTGTGCTATAAGCGTTACCAAATCTATTGTATGTA
TTGAATGGTTATTGGTATCAGCTACCAACAAATTCCGTCCGCTGGCATCC
AAGCACAGTCCGGCGGGCTCGTTTAAAATCAGGTTAGTATTTTCTTGGCT
CTTAATTTGTAGAGTAGATATATCATTTGAATCGATGTCAATAATTTTGA
TTTTATGATTATAGGTATCAGCAACATAGAGTTTGTTATTGGTATCATTG
AAAGTCACTCCTAACGGATGTTGGAGTTTCGCGCTGAATAGTCTACCGTC
AATGTCGCCAAATGCAAATAAATTAAGTGGGTTTCGATCTCCTCCGACGA
CAGGCATAACCTTTTCATCTATCATAGAAGCTTTGCGTATGCTAGAGCTT
TCGCTGTCAGCTATATATAAAACGTCTCCCGCTATGGCCAGGCCAGATGG
CTGT
BO12455.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-PA | 2154 | CG12547-RA | 1266..2151 | 904..19 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-RC | 2322 | CG12547-RC | 1419..2304 | 904..19 | 4415 | 99.9 | Minus |
| CG12547-RB | 2672 | CG12547-RB | 1322..2207 | 904..19 | 4415 | 99.9 | Minus |
| CG12547-RA | 2225 | CG12547-RA | 1322..2207 | 904..19 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4786320..4787075 | 19..774 | 3780 | 100 | Plus |
| 2R | 25286936 | 2R | 4787138..4787267 | 775..904 | 635 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-10 17:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1838..1897 | 99..41 | 108 | 66.7 | Minus |
BO12455.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:44 Download gff for
BO12455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-PA | 1266..2154 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 22:00:50 Download gff for
BO12455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 1322..2210 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:06 Download gff for
BO12455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 1322..2210 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:06 Download gff for
BO12455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4786316..4787075 | 15..774 | 99 | <- | Plus |
| 2R | 4787138..4787267 | 775..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 22:00:50 Download gff for
BO12455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 673821..674580 | 15..774 | 99 | <- | Plus |
| arm_2R | 674643..674772 | 775..904 | 99 | | Plus |
BO12455.5prime Sequence
903 bp (796 high quality bases) assembled on 2006-05-08
> BO12455.5prime
GAAGTTATCACCCGACATGGATTTTAATAATGACTTATCGCCTATTGATA
TTTTGACATTTATAACAGATGAACTGTTGCAAGCATACAAAAGCAGTAAA
GGAGAAAATGAAAAGGCTGGGACAATTGTCAAGTTTCTTGACCGATGGAA
TGACGATATCTCCATTGCAAAACTCAAGGATCTCACTGTTGAATTTGAAT
CAGATTTAGAGTGGTTCAATGTAAGTTGCCCCTTATCGATAAAAGGACTG
CAAGGAAAAGTTATCATATTAGACTTTTTCACATATTGCTGCATTAATTG
TATGCATGTGCTGCAAGAGTTGCACTTATTGGAAGAACGCTTTCCAATAG
AAAGTGGTGTTGTAGTAATCGGTGTTCACAGTCCTAAGTTTGAAAATGAA
CGCAATGCGGCAAACATTCTGTCCGCTGTACAACGATATGGAATATCACA
TCCCATTGTCAATGATTCACGATCTGGAATGTGGCGCGCTCTTGGAATTC
GTTGCTGGCCTTCTCTTTTGATTCTAAGCCCGACTGGTGTTCCGATGATG
TTATTAATGGGTGAAGGGCATGGAAAATTCCTACAGGATTTTTTTTCTTC
TGCCCTATCGTATTTTAGCCGTCAGGGTATAATTGACCATAGGGGTTTAC
CTTTAAAATTATTTAATGACTTTCAACCAGCATCTAACTTGCGTTTTCCC
GCAAAGATTGTTCAAGGCCCTAATGGCCTGTATGCTATTGCTGATACGGG
GAACAACAGGGTGCTTGTGCTTACAGCAGGCGGTGTGGTACAGCACAGAA
TTGGAGGACACCAGCCTGGTTTCGTGGATGGAGACCTAACAGTGGCACGG
TTAAATAATCCTCAAGGCATTGCGTTTCTTAATGAAAACGTTTTGATTGT
AAC
BO12455.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-PA | 2154 | CG12547-RA | 1..885 | 17..901 | 4400 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-RB | 2672 | CG12547-RB | 57..941 | 17..901 | 4410 | 99.9 | Plus |
| CG12547-RA | 2225 | CG12547-RA | 57..941 | 17..901 | 4410 | 99.9 | Plus |
| CG12547-RC | 2322 | CG12547-RC | 204..1038 | 67..901 | 4160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4787648..4788349 | 901..200 | 3495 | 99.9 | Minus |
| 2R | 25286936 | 2R | 4788400..4788586 | 203..17 | 935 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 03:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 6295..6352 | 59..2 | 128 | 69 | Minus |
BO12455.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:45 Download gff for
BO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:57 Download gff for
BO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 55..943 | 14..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:42 Download gff for
BO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 55..943 | 14..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:42 Download gff for
BO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4787646..4788345 | 204..903 | 99 | <- | Minus |
| 2R | 4788400..4788588 | 14..203 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:57 Download gff for
BO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 675151..675850 | 204..903 | 99 | <- | Minus |
| arm_2R | 675905..676093 | 14..203 | 99 | | Minus |
BO12455.complete Sequence
2185 bp assembled on 2008-08-14
GenBank Submission: FJ632447
> BO12455.complete
GAAGTTATCACCCGACATGGATTTTAATAATGACTTATCGCCTATTGATA
TTTTGACATTTATAACAGATGAACTGTTGCAAGCATACAAAAGCAGTAAA
GGAGAAAATGAAAAGGCTGGGACAATTGTCAAGTTTCTTGACCGATGGAA
TGACGATATCTCCATTGCAAAACTCAAGGATCTCACTGTTGAATTTGAAT
CAGATTTAGAGTGGTTCAATGTAAGTTGCCCCTTATCGATAAAAGGACTG
CAAGGAAAAGTTATCATATTAGACTTTTTCACATATTGCTGCATTAATTG
TATGCATGTGCTGCAAGAGTTGCACTTATTGGAAGAACGCTTTCCAATAG
AAAGTGGTGTTGTAGTAATCGGTGTTCACAGTCCTAAGTTTGAAAATGAA
CGCAATGCGGCAAACATTCTGTCCGCTGTACAACGATATGGAATATCACA
TCCCATTGTCAATGATTCACGATCTGGAATGTGGCGCGCTCTTGGAATTC
GTTGCTGGCCTTCTCTTTTGATTCTAAGCCCGACTGGTGTTCCGATGATG
TTATTAATGGGTGAAGGGCATGGAAAATTCCTACAGGATTTTTTTTCTTC
TGCCCTATCGTATTTTAGCCGTCAGGGTATAATTGACCATAGGGGTTTAC
CTTTAAAATTATTTAATGACTTTCAACCAGCATCTAACTTGCGTTTTCCC
GCAAAGATTGTTCAAGGCCCTAATGGCCTGTATGCTATTGCTGATACGGG
GAACAACAGGGTGCTTGTGCTTACAGCAGGCGGTGTGGTACAGCACAGAA
TTGGAGGACACCAGCCTGGTTTCGTGGATGGAGACCTAACAGTGGCACGG
TTTAATAATCCTCAAGGCATTGCGTTTCTTAATGAAAACGTTTTGATTGT
AGCGGACACTAAAAACCACGCCATTCGTCAGATCTCTCTAACAAATGCAA
TGGTGGAAACTCTTGCTGGCACAGGAATTCAGGGAAATGATCGAATAGGT
GGACGTCTAGGACCATTGCAACCACTGTCGTCACCGTGGGATGTTGCCAT
ATTTCGAACGAGGGACATGGATATGTCCTTTCATCTTGATGAACGTAACA
TACCAGAAAAAACAATTATCCTTATATCCATGGCAGGCACCCACCAGATT
TGGGGCTATTTTCCCGAAGGAATTATTTGGTGGAAATTTCGTAAATTTGA
GCCTTGTTGCTGTGTCTCACTAATAGGAAATGGTTTGGAAGAGAACCGTA
ATAATTCTTACCCACAGAACGCTGCATTCGCACAGCCATCTGGCCTGGCC
ATAGCGGGAGACGTTTTATATATAGCTGACAGCGAAAGCTCTAGCATACG
CAAAGCTTCTATGATAGATGGAAAGGTTATGCCTGTCGTCGGAGGAGATC
GAAACCCACTTAATTTATTTGCATTTGGCGACATTGACGGTAGACTATTC
AGCGCGAAACTCCAACATCCGTTAGGAGTGACTTTCAATGATACCAATAA
CAAACTCTATGTTGCTGATACCTATAATCATAAAATCAAAATTATTGACA
TCGATTCAAATGATATATCTACTCTACAAATTAAGAGCCAAGAAAATACT
AACCTGATTTTAAACGAGCCCGCCGGACTGTGCTTGGATGCCAGCGGACG
GAATTTGTTGGTAGCTGATACCAATAACCATTCAATACATACAATAGATT
TGGTAACGCTTATAGCACAACCGTTTGGCTTAGATTTCAGACAAATAGCG
TCCGCTAGTGAAATTGATGCGCCACAAGATACACAAAAGCCTACGGAAAA
TAATATAGTTAAAGCATTGCCTCTTGATTTAATTAAACCAAGTAAAATTT
TTTTTAACCTTCGGCTTTCGCCCAGATTTAACTTTACAAAGGAAGCTCCT
CAAAAATGGATAGTGAAAACTGTATGTCAATCTGTAATAGTAAATCCAAC
GTGCGGAAATCTACTTGATGGGATGTGCCACATGCAGGTGCAGGCTACTA
GGCCTGATTTTATGTGTGAAAGCAGTCAAATATTTACCATCGAATTCGTA
TTAAATTTATGCCTTTCAAATTGTTGCCTAGTAAAAAAAATCACGGTTTC
TATAAAACGCGATGACATACAAGAAGAATATATATCCATCCACAACGTAA
ATATTGACATTGAACAAGCAAGCTTTCTAGACCAT
BO12455.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-RB | 2154 | CG12547-PB | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| CG12547-RA | 2154 | CG12547-PA | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| CG12547-RC | 1869 | CG12547-PC | 1..1866 | 302..2167 | 9330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-RB | 2672 | CG12547-RB | 57..2207 | 17..2167 | 10755 | 100 | Plus |
| CG12547-RA | 2225 | CG12547-RA | 57..2207 | 17..2167 | 10755 | 100 | Plus |
| CG12547-RC | 2322 | CG12547-RC | 204..2304 | 67..2167 | 10505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4787138..4788349 | 1411..200 | 6060 | 100 | Minus |
| 2R | 25286936 | 2R | 4786320..4787075 | 2167..1412 | 3780 | 100 | Minus |
| 2R | 25286936 | 2R | 4788400..4788586 | 203..17 | 935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 12:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 6295..6352 | 59..2 | 128 | 69 | Minus |
BO12455.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:11 Download gff for
BO12455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 51..2206 | 14..2171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:42 Download gff for
BO12455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 57..2207 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:05 Download gff for
BO12455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 53..2203 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:43 Download gff for
BO12455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 57..2207 | 17..2169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:43 Download gff for
BO12455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4788400..4788586 | 17..203 | 100 | | Minus |
| 2R | 4786318..4787075 | 1412..2169 | 99 | <- | Minus |
| 2R | 4787138..4788345 | 204..1411 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:42 Download gff for
BO12455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 673823..674580 | 1412..2169 | 99 | <- | Minus |
| arm_2R | 674643..675850 | 204..1411 | 100 | <- | Minus |
| arm_2R | 675905..676091 | 17..203 | 100 | | Minus |
BO12455.pep Sequence
Translation from 16 to 2185
> BO12455.pep
MDFNNDLSPIDILTFITDELLQAYKSSKGENEKAGTIVKFLDRWNDDISI
AKLKDLTVEFESDLEWFNVSCPLSIKGLQGKVIILDFFTYCCINCMHVLQ
ELHLLEERFPIESGVVVIGVHSPKFENERNAANILSAVQRYGISHPIVND
SRSGMWRALGIRCWPSLLILSPTGVPMMLLMGEGHGKFLQDFFSSALSYF
SRQGIIDHRGLPLKLFNDFQPASNLRFPAKIVQGPNGLYAIADTGNNRVL
VLTAGGVVQHRIGGHQPGFVDGDLTVARFNNPQGIAFLNENVLIVADTKN
HAIRQISLTNAMVETLAGTGIQGNDRIGGRLGPLQPLSSPWDVAIFRTRD
MDMSFHLDERNIPEKTIILISMAGTHQIWGYFPEGIIWWKFRKFEPCCCV
SLIGNGLEENRNNSYPQNAAFAQPSGLAIAGDVLYIADSESSSIRKASMI
DGKVMPVVGGDRNPLNLFAFGDIDGRLFSAKLQHPLGVTFNDTNNKLYVA
DTYNHKIKIIDIDSNDISTLQIKSQENTNLILNEPAGLCLDASGRNLLVA
DTNNHSIHTIDLVTLIAQPFGLDFRQIASASEIDAPQDTQKPTENNIVKA
LPLDLIKPSKIFFNLRLSPRFNFTKEAPQKWIVKTVCQSVIVNPTCGNLL
DGMCHMQVQATRPDFMCESSQIFTIEFVLNLCLSNCCLVKKITVSIKRDD
IQEEYISIHNVNIDIEQASFLDH
BO12455.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-PB | 717 | CG12547-PB | 1..717 | 1..717 | 3758 | 100 | Plus |
| CG12547-PA | 717 | CG12547-PA | 1..717 | 1..717 | 3758 | 100 | Plus |
| CG12547-PC | 622 | CG12547-PC | 1..622 | 96..717 | 3255 | 100 | Plus |
