Clone Sequence Records
BO12457.3prime Sequence
920 bp (848 high quality bases) assembled on 2006-05-08
> BO12457.3prime
ATGGTCTAGAAAGCTTGCCCTGTTAACATGGCTGCGATTGTGATTGGAAC
TGAGACCAGAGCCGCCGATGGCATTTGATTGAGAAGCGCCGCCAGTGCCC
AGACCTACACCTCCGCCGCCGCCAGCAGAATAGCCGGGTGAATGCTGATA
GTATTCTCGTCTTCCATAATCCGGCTCGTAGTCGGAGCTTTCGTAGTGCC
CACCCCGACCACCGCCACCGCTGATGCCGCCCACTCCGCCCAGAATGTTA
GCTGGCGGTCCATGGGGTCCATGTCCATGAGTGCCATAGGAGTAGCTATC
GTACGACTGGTGGGGATCATAACCAAGTCCGTCGTCATAGCCCCGACCAT
AGGTTTCGTCCATGGCCGTCCTGGCTTTTTCCAATATGGACATCACTTTC
TGCTTCGGAGCCAGAACATTTTTACTAAAAGATGACGGCTGTGAGCTCCT
ATAGCTGTGATGCGGCGTGTTCTTGACCCCTCCAATCGGGTTGATTGAGC
CGCCACCCAAGACATTGTTGCCTCCCTGCATGTGAGACGTCTTCTTATAG
CCACTCTTGGCATTATCGTTGTCATTGAGGCTAGTGCTGTCCATCAGCTC
GCGCAGCTGCTCCTGTCGGATAATGTCGTTACTGTCTGGGATCAAATACT
TTCTCAGCTCGGCCATGGCGTAGGCGATTCGGGCGTAGGCTTCTGCGGGC
GGCGCTATTGTCGATATCTCAACATGCAGATCGCTGTTGAGGTGAGCGTA
CTTGGGATCCTTGGAGCTGCGCAATTCCTCTTCTTTGACTCGATCGCGCA
TAGAGTTGCGGCCCAGGACGGTCATCTTGCAAAGGGTCTCCTCCTGAAGG
CGGCGAAGGGAGTTGCCCTTGGGCCCCAGCAGTTTTCCAACGAAGTTGAA
CTTGGGATGTTCTCTAATGG
BO12457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4816-PA | 1287 | qkr54B-RA | 383..1284 | 920..19 | 4510 | 100 | Minus |
| CG4816-PB | 1287 | qkr54B-RB | 383..1284 | 920..19 | 4510 | 100 | Minus |
| CG4816-PC | 1185 | qkr54B-RC | 383..854 | 920..449 | 2360 | 100 | Minus |
| CG4816-PC | 1185 | qkr54B-RC | 854..1182 | 347..19 | 1645 | 100 | Minus |
| CG3927-PA | 813 | CG3927-RA | 307..349 | 876..834 | 140 | 93 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr54B-RE | 3963 | CG4816-RE | 510..1411 | 920..19 | 4510 | 100 | Minus |
| qkr54B-RD | 3482 | CG4816-RD | 510..1411 | 920..19 | 4510 | 100 | Minus |
| qkr54B-RB | 2551 | CG4816-RB | 875..1776 | 920..19 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17471170..17471624 | 902..448 | 2275 | 100 | Minus |
| 2R | 25286936 | 2R | 17471854..17472075 | 347..126 | 1110 | 100 | Minus |
| 2R | 25286936 | 2R | 17472131..17472242 | 130..19 | 545 | 99.1 | Minus |
| 2R | 25286936 | 2R | 17471691..17471795 | 451..347 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 22595151..22595289 | 902..764 | 305 | 81.3 | Minus |
| 2R | 25286936 | 2R | 21773807..21773943 | 902..766 | 280 | 80.3 | Minus |
| 2R | 25286936 | 2R | 22414765..22414958 | 713..906 | 280 | 76.3 | Plus |
| 2L | 23513712 | 2L | 20863636..20863772 | 766..902 | 265 | 79.6 | Plus |
| 2R | 25286936 | 2R | 22410917..22411053 | 766..902 | 250 | 78.8 | Plus |
| 2R | 25286936 | 2R | 22651051..22651189 | 902..764 | 230 | 77.7 | Minus |
| 2R | 25286936 | 2R | 22466682..22466776 | 902..808 | 190 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:49:17 has no hits.
BO12457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:23 Download gff for
BO12457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4816-PA | 383..1287 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:21 Download gff for
BO12457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4816-PB | 383..1287 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:26:43 Download gff for
BO12457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 875..1784 | 10..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:47 Download gff for
BO12457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 875..1784 | 10..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:47 Download gff for
BO12457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17471047..17471066 | 901..920 | 100 | -> | Minus |
| 2R | 17471172..17471623 | 449..900 | 100 | -> | Minus |
| 2R | 17471694..17471795 | 347..448 | 100 | -> | Minus |
| 2R | 17471855..17472075 | 126..346 | 100 | -> | Minus |
| 2R | 17472136..17472250 | 10..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:26:43 Download gff for
BO12457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13358552..13358571 | 901..920 | 100 | -> | Minus |
| arm_2R | 13358677..13359128 | 449..900 | 100 | -> | Minus |
| arm_2R | 13359199..13359300 | 347..448 | 100 | -> | Minus |
| arm_2R | 13359360..13359580 | 126..346 | 100 | -> | Minus |
| arm_2R | 13359641..13359755 | 10..125 | 96 | | Minus |
BO12457.5prime Sequence
875 bp (808 high quality bases) assembled on 2006-05-08
> BO12457.5prime
GAAGTTATCACTCGACATGACCGAGAAGTACGACGGCAACGGTGACTTTT
CCGCTTTCAACGACGATGACAACGATTTTGGCGGCAAGCCTCGCAAGCCT
GGTGGATCTATTGGAGCACCAGGTGGCGCCCACAATGGCGACGCTTCCGC
CCACGATCACGGCCATCATGGAGGAGATCCCGGCGGCAATGTCCAAATAA
ACGAGAAAGCCAATGAGTACATACGCGATTGTATGGCGGAAAGAAATCGA
ATGGACAGGAAGTTTCCCATTGCCGAGAAACTGCTGGAAGGCGAGATAGA
AAAGGTCCAGACCACAGGAAGGATTCCTTCCAGAGAGCAAAAGTATGCCG
ATATCTATAGAGAGAAGCCGCTGCGGATCTCGCAACGTGTTTTAGTTCCC
ATTAGAGAACATCCCAAGTTCAACTTCGTTGGAAAACTGCTGGGGCCCAA
GGGCAACTCCCTTCGCCGCCTTCAGGAGGAGACCCTTTGCAAGATGACCG
TCCTGGGCCGCAACTCTATGCGCGATCGAGTCAAAGAAGAGGAATTGCGC
AGCTCCAAGGATCCCAAGTACGCTCACCTCAACAGCGATCTGCATGTTGA
GATATCGACAATAGCGCCGCCCGCAGAAGCCTACGCCCGAATCGCCTACG
CCATGGCCGAGCTGAGAAAGTATTTGATCCCAGACAGTAACGACATTATC
CGACAGGAGCAGCTGCGCGAGCTGATGGACAGCACTAGCCTCAATGACAA
CGATAATGCCAAGAGTGGCTATAAGAAGACGTCTCACATGCAGGGAGGCA
ACAATGTCTTGGGTGGCGGCTCAATCAACCCGATTGGAGGGGTCAAGAAC
ACGCCGCATCACAGCTATAGGAGCT
BO12457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4816-PA | 1287 | qkr54B-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG4816-PB | 1287 | qkr54B-RB | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG4816-PC | 1185 | qkr54B-RC | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3927-PA | 813 | CG3927-RA | 307..349 | 443..485 | 140 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr54B-RE | 3963 | CG4816-RE | 127..986 | 16..875 | 4300 | 100 | Plus |
| qkr54B-RD | 3482 | CG4816-RD | 127..986 | 16..875 | 4300 | 100 | Plus |
| qkr54B-RB | 2551 | CG4816-RB | 492..1351 | 16..875 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17471170..17471624 | 417..871 | 2275 | 100 | Plus |
| 2R | 25286936 | 2R | 17470609..17470886 | 16..293 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 17470941..17471066 | 293..418 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 22595151..22595289 | 417..555 | 305 | 81.3 | Plus |
| 2R | 25286936 | 2R | 21773807..21773943 | 417..553 | 280 | 80.3 | Plus |
| 2R | 25286936 | 2R | 22414765..22414958 | 606..413 | 280 | 76.3 | Minus |
| 2L | 23513712 | 2L | 20863636..20863772 | 553..417 | 265 | 79.6 | Minus |
| 2R | 25286936 | 2R | 22410917..22411053 | 553..417 | 250 | 78.8 | Minus |
| 2R | 25286936 | 2R | 22651051..22651189 | 417..555 | 230 | 77.7 | Plus |
| 2R | 25286936 | 2R | 22466682..22466776 | 417..511 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:49:10 has no hits.
BO12457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:25 Download gff for
BO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4816-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:22 Download gff for
BO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4816-PB | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:23 Download gff for
BO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 488..1351 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:23 Download gff for
BO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 488..1351 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:23 Download gff for
BO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17470605..17470886 | 9..293 | 98 | -> | Plus |
| 2R | 17470942..17471066 | 294..418 | 100 | -> | Plus |
| 2R | 17471172..17471625 | 419..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:23 Download gff for
BO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13358110..13358391 | 9..293 | 98 | -> | Plus |
| arm_2R | 13358447..13358571 | 294..418 | 100 | -> | Plus |
| arm_2R | 13358677..13359130 | 419..875 | 99 | | Plus |
BO12457.complete Sequence
1318 bp assembled on 2008-08-14
GenBank Submission: FJ638699
> BO12457.complete
GAAGTTATCACTCGACATGACCGAGAAGTACGACGGCAACGGTGACTTTT
CCGCTTTCAACGACGATGACAACGATTTTGGCGGCAAGCCTCGCAAGCCT
GGTGGATCTATTGGAGCACCAGGTGGCGCCCACAATGGCGACGCTTCCGC
CCACGATCACGGCCATCATGGAGGAGATCCCGGCGGCAATGTCCAAATAA
ACGAGAAAGCCAATGAGTACATACGCGATTGTATGGCGGAAAGAAATCGA
ATGGACAGGAAGTTTCCCATTGCCGAGAAACTGCTGGAAGGCGAGATAGA
AAAGGTCCAGACCACAGGAAGGATTCCTTCCAGAGAGCAAAAGTATGCCG
ATATCTATAGAGAGAAGCCGCTGCGGATCTCGCAACGTGTTTTAGTTCCC
ATTAGAGAACATCCCAAGTTCAACTTCGTTGGAAAACTGCTGGGGCCCAA
GGGCAACTCCCTTCGCCGCCTTCAGGAGGAGACCCTTTGCAAGATGACCG
TCCTGGGCCGCAACTCTATGCGCGATCGAGTCAAAGAAGAGGAATTGCGC
AGCTCCAAGGATCCCAAGTACGCTCACCTCAACAGCGATCTGCATGTTGA
GATATCGACAATAGCGCCGCCCGCAGAAGCCTACGCCCGAATCGCCTACG
CCATGGCCGAGCTGAGAAAGTATTTGATCCCAGACAGTAACGACATTATC
CGACAGGAGCAGCTGCGCGAGCTGATGGACAGCACTAGCCTCAATGACAA
CGATAATGCCAAGAGTGGCTATAAGAAGACGTCTCACATGCAGGGAGGCA
ACAATGTCTTGGGTGGCGGCTCAATCAACCCGATTGGAGGGGTCAAGAAC
ACGCCGCATCACAGCTATAGGAGCTCACAGCCGTCATCTTTTAGTAAAAA
TGTTCTGGCTCCGAAGCAGAAAGTGATGTCCATATTGGAAAAAGCCAGGA
CGGCCATGGACGAAACCTATGGTCGGGGCTATGACGACGGACTTGGTTAT
GATCCCCACCAGTCGTACGATAGCTACTCCTATGGCACTCATGGACATGG
ACCCCATGGACCGCCAGCTAACATTCTGGGCGGAGTGGGCGGCATCAGCG
GTGGCGGTGGTCGGGGTGGGCACTACGAAAGCTCCGACTACGAGCCGGAT
TATGGAAGACGAGAATACTATCAGCATTCACCCGGCTATTCTGCTGGCGG
CGGCGGAGGTGTAGGTCTGGGCACTGGCGGCGCTTCTCAATCAAATGCCA
TCGGCGGCTCTGGTCTCAGTTCCAATCACAATCGCAGCCATGTTAACAGG
GCAAGCTTTCTAGACCAT
BO12457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr54B-RE | 1854 | CG4816-PE | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| qkr54B-RD | 1287 | CG4816-PD | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| qkr54B-RB | 1287 | CG4816-PB | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr54B-RE | 3963 | CG4816-RE | 127..1411 | 16..1300 | 6425 | 100 | Plus |
| qkr54B-RD | 3482 | CG4816-RD | 127..1411 | 16..1300 | 6425 | 100 | Plus |
| qkr54B-RB | 2551 | CG4816-RB | 492..1776 | 16..1300 | 6425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17471170..17471624 | 417..871 | 2275 | 100 | Plus |
| 2R | 25286936 | 2R | 17470609..17470886 | 16..293 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 17471854..17472075 | 972..1193 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 17470941..17471066 | 293..418 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 17472131..17472242 | 1189..1300 | 545 | 99.1 | Plus |
| 2R | 25286936 | 2R | 17471691..17471795 | 868..972 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 22595151..22595289 | 417..555 | 305 | 81.3 | Plus |
| 2R | 25286936 | 2R | 21773807..21773943 | 417..553 | 280 | 80.3 | Plus |
| 2R | 25286936 | 2R | 22414765..22414958 | 606..413 | 280 | 76.3 | Minus |
| 2L | 23513712 | 2L | 20863636..20863772 | 553..417 | 265 | 79.6 | Minus |
| 2R | 25286936 | 2R | 22410917..22411053 | 553..417 | 250 | 78.8 | Minus |
| 2R | 25286936 | 2R | 22651051..22651189 | 417..555 | 230 | 77.7 | Plus |
| 2R | 25286936 | 2R | 22466682..22466776 | 417..511 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:53:29 has no hits.
BO12457.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:10 Download gff for
BO12457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 54..1350 | 9..1309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:23 Download gff for
BO12457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 493..1776 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:52 Download gff for
BO12457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 59..1342 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:53 Download gff for
BO12457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 493..1776 | 17..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:53 Download gff for
BO12457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17470942..17471066 | 294..418 | 100 | -> | Plus |
| 2R | 17471855..17472075 | 973..1193 | 100 | -> | Plus |
| 2R | 17472136..17472242 | 1194..1302 | 98 | | Plus |
| 2R | 17470610..17470886 | 17..293 | 100 | -> | Plus |
| 2R | 17471172..17471623 | 419..870 | 100 | -> | Plus |
| 2R | 17471694..17471795 | 871..972 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:23 Download gff for
BO12457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13358447..13358571 | 294..418 | 100 | -> | Plus |
| arm_2R | 13358115..13358391 | 17..293 | 100 | -> | Plus |
| arm_2R | 13358677..13359128 | 419..870 | 100 | -> | Plus |
| arm_2R | 13359199..13359300 | 871..972 | 100 | -> | Plus |
| arm_2R | 13359360..13359580 | 973..1193 | 100 | -> | Plus |
| arm_2R | 13359641..13359747 | 1194..1302 | 98 | | Plus |
BO12457.pep Sequence
Translation from 16 to 1318
> BO12457.pep
MTEKYDGNGDFSAFNDDDNDFGGKPRKPGGSIGAPGGAHNGDASAHDHGH
HGGDPGGNVQINEKANEYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTT
GRIPSREQKYADIYREKPLRISQRVLVPIREHPKFNFVGKLLGPKGNSLR
RLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKYAHLNSDLHVEISTIA
PPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLRELMDSTSLNDNDNAKS
GYKKTSHMQGGNNVLGGGSINPIGGVKNTPHHSYRSSQPSSFSKNVLAPK
QKVMSILEKARTAMDETYGRGYDDGLGYDPHQSYDSYSYGTHGHGPHGPP
ANILGGVGGISGGGGRGGHYESSDYEPDYGRREYYQHSPGYSAGGGGGVG
LGTGGASQSNAIGGSGLSSNHNRSHVNRASFLDH
BO12457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr54B-PE | 617 | CG4816-PE | 1..433 | 1..433 | 2304 | 99.3 | Plus |
| qkr54B-PD | 428 | CG4816-PD | 1..428 | 1..428 | 2294 | 100 | Plus |
| qkr54B-PB | 428 | CG4816-PB | 1..428 | 1..428 | 2294 | 100 | Plus |
| qkr54B-PA | 428 | CG4816-PA | 1..428 | 1..428 | 2294 | 100 | Plus |
| qkr58E-1-PA | 396 | CG3613-PA | 9..379 | 14..430 | 732 | 43.2 | Plus |
