Clone Sequence Records
BO12464.3prime Sequence
848 bp (746 high quality bases) assembled on 2006-05-08
> BO12464.3prime
ATGGTCTAGAAAGCTTGCCGCCAGCTTGCGGGCCTGGACCAGTTTGTTGA
TGTCGTTGTAGGTGGACAGCATTGCCGGGTTCTCGAGGTCCTTCAGCTCC
TTGCACTTGGCGAAGGACTCGTCGCAGTCGACGCCGTCCTGACCGTCCTT
CGCCGCTCGCATGTACTTGAAGAATCGCAGGATGTCCGGGTTGTCGGAAG
TAGGCTTCCGCAGCTCGTTCAGTTCCCTGCTGAGTTGAGCTGAGACCAGG
TTGCTGTACGGAGCATACTTCGCGGGGTTGGCGTACATCAGGCAGATGAG
TTTCTCGCGGCAAGCTTCGTTCTCCGGATTCAATTTGAGCTGGGCAAACA
CCGAGTCCAGGCGGGACAATAGTGGACTGTAGAAGGGGTCATAGTTGGAC
AGCAAAAGCGACGAGCTGGGCACCTTCTGGAAGCTCTGGAACGTGTTCAT
CACGGCCGGCGTTGGTTTCTTCGTCATTCCTGGAGCTCCGCCACCAGCTC
CGGCGCTGAAGGATCCTGACATGCTCTGGGAGTTTTTGAAGGAGGCAGCG
CCAATGCTCTGCAGAGCACTCAGATAGGTGTCCTGCATCATCTGCTGACC
TCCATAGCGCGACAAAGTGGCCTGGTTCACCGAGTTCCCATTGACCTGGG
CATATTGCGCCTGCTGCTGTGATGCCTCTGCATTGTACTCGTAGCCGGCT
GGCGTTTTGCCCTCGTCCGCCAGGGAAAATTTGCTGTCATCATCGAAATT
CATGCTGTTGTCCCGGAACTCCAGTTCTTGTGGCGGCTCAATGGGGCGGA
TAAACAACGGCACCGACCCAGCCGAGCCGGAAGTGATGCCCTTGCCAT
BO12464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15589-PA | 1602 | CG15589-RA | 771..1599 | 847..19 | 4120 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi24-RA | 2629 | CG15589-RA | 1301..2129 | 847..19 | 4130 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6205880..6206336 | 682..226 | 2285 | 100 | Minus |
3R | 32079331 | 3R | 6206969..6207178 | 228..19 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 6205657..6205819 | 840..678 | 800 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:43:56 has no hits.
BO12464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:36 Download gff for
BO12464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15589-PA | 769..1602 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:38 Download gff for
BO12464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15589-PA | 769..1602 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:03:26 Download gff for
BO12464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi24-RA | 1299..2129 | 19..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:57 Download gff for
BO12464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi24-RA | 1299..2129 | 19..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:57 Download gff for
BO12464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6205649..6205819 | 678..848 | 97 | -> | Minus |
3R | 6205885..6206335 | 227..677 | 100 | -> | Minus |
3R | 6206971..6207178 | 19..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:03:26 Download gff for
BO12464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2031371..2031541 | 678..848 | 97 | -> | Minus |
arm_3R | 2031607..2032057 | 227..677 | 100 | -> | Minus |
arm_3R | 2032693..2032900 | 19..226 | 100 | | Minus |
BO12464.5prime Sequence
847 bp (783 high quality bases) assembled on 2006-05-08
> BO12464.5prime
GAAGTTATCAGCCTACATGAAAATGGGTAGCCAGTACATCGACGGGGCGA
AATTAAAAGCAAACAGCCACAGAAAGCGGCGATGCAGTCCGCTGCTTTAT
GGAATTATCTTGCTCTGCAAAGTGGCGATGATACCGGCAGCTGTTCCGGA
ATCGGAATTGGATGCAGGAGCCCTCTATAGTCAGCCCCTCACTACGATGG
CGGGACAGCCGCGCAACGATGACACATTCCGGCCCATCCTACCCATCGAC
ATCAGTCCGGAGTTCATTTCGAGGAATGTATTCACAAAGTCGGGCCAGTA
CAGAGTGTTCCAGCCGGCGGAGAGCGAGAGTGATCTGCGCTTGGCGGTGG
CCATGCGTCGACGGAACTTTAAACACCCCTCGGATTCACCCAGAAAGCAG
GAGTCCGAAAGTTCGGCAGCCGCTTTTAAAAACCAAACCATTACCTCTAT
CGACGCCGAACTAAAAGGTCTGGAGGATCTGCTCGTGGACTACGTGGAGC
AGTTCTTCAGCAACGGCAGATATGAGCCCACTCCTGGTTTGGTCCTGGCT
CTTCAGCAGAACCACTCGCACCCACAATCTTATACTGGCAAGCGCACCAC
CCGAAGCATTTTGGAGGACACCAACGTTGAGCTGAATGTTCCAAGGGCTT
TTGAAAGCGCCCGACTGCTTTTCTTTAGCGGTTTGAAGAAGGTGATGTGG
CCCATCTATATGGGTTTGCAAGTGCTGAAGAGCGTGCTCTTCGCCATGTT
CCTGCCAACCATCATCAGCAGTGTAAGCCGACTGATTTGGCAGGGCATCA
CTTCCGGCTCGGCTGGGTCGGTGCCGTTGTTTATCCGCCCCATTGAG
BO12464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15589-PA | 1602 | CG15589-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG15589-PA | 1602 | CG15589-RA | 776..831 | 792..847 | 280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi24-RA | 2629 | CG15589-RA | 531..1361 | 17..847 | 4110 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6204445..6205110 | 17..682 | 3330 | 100 | Plus |
3R | 32079331 | 3R | 6205483..6205590 | 680..787 | 540 | 100 | Plus |
3R | 32079331 | 3R | 6205657..6205710 | 794..847 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:38:10 has no hits.
BO12464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:37 Download gff for
BO12464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15589-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:39 Download gff for
BO12464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15589-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:00 Download gff for
BO12464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi24-RA | 525..1361 | 10..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:17 Download gff for
BO12464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi24-RA | 525..1361 | 10..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:17 Download gff for
BO12464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6204439..6205108 | 10..680 | 99 | -> | Plus |
3R | 6205484..6205597 | 681..794 | 98 | -> | Plus |
3R | 6205658..6205710 | 795..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:00 Download gff for
BO12464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2030161..2030830 | 10..680 | 99 | -> | Plus |
arm_3R | 2031206..2031319 | 681..794 | 98 | -> | Plus |
arm_3R | 2031380..2031432 | 795..847 | 100 | | Plus |
BO12464.complete Sequence
1633 bp assembled on 2008-08-14
GenBank Submission: FJ632448
> BO12464.complete
GAAGTTATCAGTCGACATGAAAATGGGTAGCCAGTACATCGACGGGGCGA
AATTAAAAGCAAACAGCCACAGAAAGCGGCGATGCAGTCCGCTGCTTTAT
GGAATTATCTTGCTCTGCAAAGTGGCGATGATACCGGCAGCTGTTCCGGA
ATCGGAATTGGATGCAGGAGCCCTCTATAGTCAGCCCCTCACTACGATGG
CGGGACAGCCGCGCAACGATGACACATTCCGGCCCATCCTACCCATCGAC
ATCAGTCCGGAGTTCATTTCGAGGAATGTATTCACAAAGTCGGGCCAGTA
CAGAGTGTTCCAGCCGGCGGAGAGCGAGAGTGATCTGCGCTTGGCGGTGG
CCATGCGTCGACGGAACTTTAAACACCCCTCGGATTCACCCAGAAAGCAG
GAGTCCGAAAGTTCGGCAGCCGCTTTTAAAAACCAAACCATTACCTCTAT
CGACGCCGAACTAAAAGGTCTGGAGGATCTGCTCGTGGACTACGTGGAGC
AGTTCTTCAGCAACGGCAGATATGAGCCCACTCCTGGTTTGGTCCTGGCT
CTTCAGCAGAACCACTCGCACCCACAATCTTATACTGGCAAGCGCACCAC
CCGAAGCATTTTGGAGGACACCAACGTTGAGCTGAATGTTCCAAGGGCTT
TTGAAAGCGCCCGACTGCTTTTCTTTAGCGGTTTGAAGAAGGTGATGTGG
CCCATCTATATGGGTTTGCAAGTGCTGAAGAGCGTGCTCTTCGCCATGTT
CCTGCCAACCATCATCAGCAGTGTAAGCCGACTGATTGGCAAGGGCATCA
CTTCCGGCTCGGCTGGGTCGGTGCCGTTGTTTATCCGCCCCATTGAGCCG
CCACAAGAACTGGACTTCCGGGACAACAGCATGAATTTCGATGATGACAG
CAAATTTTCCCTGGCGGACGAGGGCAAAACGCCAGCCGGCTACGAGTACA
ATGCAGAGGCATCACAGCAGCAGGCGCAATATGCCCAGGTCAATGGGAAC
TCGGTGAACCAGGCCACTTTGTCGCGCTATGGAGGTCAGCAGATGATGCA
GGACACCTATCTGAGTGCTCTGCAGAGCATTGGCGCTGCCTCCTTCAAAA
ACTCCCAGAGCATGTCAGGATCCTTCAGCGCCGGAGCTGGTGGCGGAGCT
CCAGGAATGACGAAGAAACCAACGCCGGCCGTGATGAACACGTTCCAGAG
CTTCCAGAAGGTGCCCAGCTCGTCGCTTTTGCTGTCCAACTATGACCCCT
TCTACAGTCCACTATTGTCCCGCCTGGACTCGGTGTTTGCCCAGCTCAAA
TTGAATCCGGAGAACGAAGCTTGCCGCGAGAAACTCATCTGCCTGATGTA
CGCCAACCCCGCGAAGTATGCTCCGTACAGCAACCTGGTCTCAGCTCAAC
TCAGCAGGGAACTGAACGAGCTGCGGAAGCCTACTTCCGACAACCCGGAC
ATCCTGCGATTCTTCAAGTACATGCGAGCGGCGAAGGACGGTCAGGACGG
CGTCGACTGCGACGAGTCCTTCGCCAAGTGCAAGGAGCTGAAGGACCTCG
AGAACCCGGCAATGCTGTCCACCTACAACGACATCAACAAACTGGTCCAG
GCCCGCAAGCTGGCGGCAAGCTTTCTAGACCAT
BO12464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi24-RA | 1602 | CG15589-PA | 1..1599 | 17..1615 | 7995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi24-RA | 2629 | CG15589-RA | 531..2129 | 17..1615 | 7995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6204445..6205110 | 17..682 | 3330 | 100 | Plus |
3R | 32079331 | 3R | 6205880..6206336 | 952..1408 | 2285 | 100 | Plus |
3R | 32079331 | 3R | 6206969..6207178 | 1406..1615 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 6205657..6205819 | 794..956 | 815 | 100 | Plus |
3R | 32079331 | 3R | 6205483..6205598 | 680..795 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:38 has no hits.
BO12464.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:12 Download gff for
BO12464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15589-RA | 529..2127 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:04 Download gff for
BO12464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi24-RA | 531..2129 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:54 Download gff for
BO12464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15589-RA | 529..2127 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:53 Download gff for
BO12464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi24-RA | 531..2129 | 17..1617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:53 Download gff for
BO12464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6205658..6205819 | 795..956 | 100 | -> | Plus |
3R | 6204445..6205108 | 17..680 | 100 | -> | Plus |
3R | 6205484..6205597 | 681..794 | 100 | -> | Plus |
3R | 6205885..6206335 | 957..1407 | 100 | -> | Plus |
3R | 6206971..6207178 | 1408..1617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:04 Download gff for
BO12464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2030167..2030830 | 17..680 | 100 | -> | Plus |
arm_3R | 2031206..2031319 | 681..794 | 100 | -> | Plus |
arm_3R | 2031380..2031541 | 795..956 | 100 | -> | Plus |
arm_3R | 2031607..2032057 | 957..1407 | 100 | -> | Plus |
arm_3R | 2032693..2032900 | 1408..1617 | 99 | | Plus |
BO12464.pep Sequence
Translation from 16 to 1633
> BO12464.pep
MKMGSQYIDGAKLKANSHRKRRCSPLLYGIILLCKVAMIPAAVPESELDA
GALYSQPLTTMAGQPRNDDTFRPILPIDISPEFISRNVFTKSGQYRVFQP
AESESDLRLAVAMRRRNFKHPSDSPRKQESESSAAAFKNQTITSIDAELK
GLEDLLVDYVEQFFSNGRYEPTPGLVLALQQNHSHPQSYTGKRTTRSILE
DTNVELNVPRAFESARLLFFSGLKKVMWPIYMGLQVLKSVLFAMFLPTII
SSVSRLIGKGITSGSAGSVPLFIRPIEPPQELDFRDNSMNFDDDSKFSLA
DEGKTPAGYEYNAEASQQQAQYAQVNGNSVNQATLSRYGGQQMMQDTYLS
ALQSIGAASFKNSQSMSGSFSAGAGGGAPGMTKKPTPAVMNTFQSFQKVP
SSSLLLSNYDPFYSPLLSRLDSVFAQLKLNPENEACREKLICLMYANPAK
YAPYSNLVSAQLSRELNELRKPTSDNPDILRFFKYMRAAKDGQDGVDCDE
SFAKCKELKDLENPAMLSTYNDINKLVQARKLAASFLDH
BO12464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi24-PA | 533 | CG15589-PA | 1..533 | 1..533 | 2724 | 100 | Plus |
Osi17-PB | 648 | CG15598-PB | 548..643 | 408..505 | 259 | 44.9 | Plus |
Osi17-PA | 648 | CG15598-PA | 548..643 | 408..505 | 259 | 44.9 | Plus |
Osi17-PD | 750 | CG15598-PD | 650..745 | 408..505 | 259 | 44.9 | Plus |
Osi17-PC | 750 | CG15598-PC | 650..745 | 408..505 | 259 | 44.9 | Plus |