Clone BO12464 Report

Search the DGRC for BO12464

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG15589-RA
Protein status:BO12464.pep: Imported from assembly
Sequenced Size:1633

Clone Sequence Records

BO12464.3prime Sequence

848 bp (746 high quality bases) assembled on 2006-05-08

> BO12464.3prime
ATGGTCTAGAAAGCTTGCCGCCAGCTTGCGGGCCTGGACCAGTTTGTTGA
TGTCGTTGTAGGTGGACAGCATTGCCGGGTTCTCGAGGTCCTTCAGCTCC
TTGCACTTGGCGAAGGACTCGTCGCAGTCGACGCCGTCCTGACCGTCCTT
CGCCGCTCGCATGTACTTGAAGAATCGCAGGATGTCCGGGTTGTCGGAAG
TAGGCTTCCGCAGCTCGTTCAGTTCCCTGCTGAGTTGAGCTGAGACCAGG
TTGCTGTACGGAGCATACTTCGCGGGGTTGGCGTACATCAGGCAGATGAG
TTTCTCGCGGCAAGCTTCGTTCTCCGGATTCAATTTGAGCTGGGCAAACA
CCGAGTCCAGGCGGGACAATAGTGGACTGTAGAAGGGGTCATAGTTGGAC
AGCAAAAGCGACGAGCTGGGCACCTTCTGGAAGCTCTGGAACGTGTTCAT
CACGGCCGGCGTTGGTTTCTTCGTCATTCCTGGAGCTCCGCCACCAGCTC
CGGCGCTGAAGGATCCTGACATGCTCTGGGAGTTTTTGAAGGAGGCAGCG
CCAATGCTCTGCAGAGCACTCAGATAGGTGTCCTGCATCATCTGCTGACC
TCCATAGCGCGACAAAGTGGCCTGGTTCACCGAGTTCCCATTGACCTGGG
CATATTGCGCCTGCTGCTGTGATGCCTCTGCATTGTACTCGTAGCCGGCT
GGCGTTTTGCCCTCGTCCGCCAGGGAAAATTTGCTGTCATCATCGAAATT
CATGCTGTTGTCCCGGAACTCCAGTTCTTGTGGCGGCTCAATGGGGCGGA
TAAACAACGGCACCGACCCAGCCGAGCCGGAAGTGATGCCCTTGCCAT

BO12464.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15589-PA 1602 CG15589-RA 771..1599 847..19 4120 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Osi24-RA 2629 CG15589-RA 1301..2129 847..19 4130 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6205880..6206336 682..226 2285 100 Minus
3R 32079331 3R 6206969..6207178 228..19 1050 100 Minus
3R 32079331 3R 6205657..6205819 840..678 800 99.4 Minus
Blast to na_te.dros performed on 2015-02-10 18:43:56 has no hits.

BO12464.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:36 Download gff for BO12464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15589-PA 769..1602 18..848 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:38 Download gff for BO12464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15589-PA 769..1602 18..848 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:03:26 Download gff for BO12464.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 1299..2129 19..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:57 Download gff for BO12464.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 1299..2129 19..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:57 Download gff for BO12464.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6205649..6205819 678..848 97 -> Minus
3R 6205885..6206335 227..677 100 -> Minus
3R 6206971..6207178 19..226 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:03:26 Download gff for BO12464.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2031371..2031541 678..848 97 -> Minus
arm_3R 2031607..2032057 227..677 100 -> Minus
arm_3R 2032693..2032900 19..226 100   Minus

BO12464.5prime Sequence

847 bp (783 high quality bases) assembled on 2006-05-08

> BO12464.5prime
GAAGTTATCAGCCTACATGAAAATGGGTAGCCAGTACATCGACGGGGCGA
AATTAAAAGCAAACAGCCACAGAAAGCGGCGATGCAGTCCGCTGCTTTAT
GGAATTATCTTGCTCTGCAAAGTGGCGATGATACCGGCAGCTGTTCCGGA
ATCGGAATTGGATGCAGGAGCCCTCTATAGTCAGCCCCTCACTACGATGG
CGGGACAGCCGCGCAACGATGACACATTCCGGCCCATCCTACCCATCGAC
ATCAGTCCGGAGTTCATTTCGAGGAATGTATTCACAAAGTCGGGCCAGTA
CAGAGTGTTCCAGCCGGCGGAGAGCGAGAGTGATCTGCGCTTGGCGGTGG
CCATGCGTCGACGGAACTTTAAACACCCCTCGGATTCACCCAGAAAGCAG
GAGTCCGAAAGTTCGGCAGCCGCTTTTAAAAACCAAACCATTACCTCTAT
CGACGCCGAACTAAAAGGTCTGGAGGATCTGCTCGTGGACTACGTGGAGC
AGTTCTTCAGCAACGGCAGATATGAGCCCACTCCTGGTTTGGTCCTGGCT
CTTCAGCAGAACCACTCGCACCCACAATCTTATACTGGCAAGCGCACCAC
CCGAAGCATTTTGGAGGACACCAACGTTGAGCTGAATGTTCCAAGGGCTT
TTGAAAGCGCCCGACTGCTTTTCTTTAGCGGTTTGAAGAAGGTGATGTGG
CCCATCTATATGGGTTTGCAAGTGCTGAAGAGCGTGCTCTTCGCCATGTT
CCTGCCAACCATCATCAGCAGTGTAAGCCGACTGATTTGGCAGGGCATCA
CTTCCGGCTCGGCTGGGTCGGTGCCGTTGTTTATCCGCCCCATTGAG

BO12464.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15589-PA 1602 CG15589-RA 1..771 17..787 3855 100 Plus
CG15589-PA 1602 CG15589-RA 776..831 792..847 280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Osi24-RA 2629 CG15589-RA 531..1361 17..847 4110 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6204445..6205110 17..682 3330 100 Plus
3R 32079331 3R 6205483..6205590 680..787 540 100 Plus
3R 32079331 3R 6205657..6205710 794..847 270 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:38:10 has no hits.

BO12464.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:37 Download gff for BO12464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15589-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:39 Download gff for BO12464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15589-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:00 Download gff for BO12464.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 525..1361 10..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:17 Download gff for BO12464.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 525..1361 10..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:17 Download gff for BO12464.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6204439..6205108 10..680 99 -> Plus
3R 6205484..6205597 681..794 98 -> Plus
3R 6205658..6205710 795..847 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:00 Download gff for BO12464.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2030161..2030830 10..680 99 -> Plus
arm_3R 2031206..2031319 681..794 98 -> Plus
arm_3R 2031380..2031432 795..847 100   Plus

BO12464.complete Sequence

1633 bp assembled on 2008-08-14

GenBank Submission: FJ632448

> BO12464.complete
GAAGTTATCAGTCGACATGAAAATGGGTAGCCAGTACATCGACGGGGCGA
AATTAAAAGCAAACAGCCACAGAAAGCGGCGATGCAGTCCGCTGCTTTAT
GGAATTATCTTGCTCTGCAAAGTGGCGATGATACCGGCAGCTGTTCCGGA
ATCGGAATTGGATGCAGGAGCCCTCTATAGTCAGCCCCTCACTACGATGG
CGGGACAGCCGCGCAACGATGACACATTCCGGCCCATCCTACCCATCGAC
ATCAGTCCGGAGTTCATTTCGAGGAATGTATTCACAAAGTCGGGCCAGTA
CAGAGTGTTCCAGCCGGCGGAGAGCGAGAGTGATCTGCGCTTGGCGGTGG
CCATGCGTCGACGGAACTTTAAACACCCCTCGGATTCACCCAGAAAGCAG
GAGTCCGAAAGTTCGGCAGCCGCTTTTAAAAACCAAACCATTACCTCTAT
CGACGCCGAACTAAAAGGTCTGGAGGATCTGCTCGTGGACTACGTGGAGC
AGTTCTTCAGCAACGGCAGATATGAGCCCACTCCTGGTTTGGTCCTGGCT
CTTCAGCAGAACCACTCGCACCCACAATCTTATACTGGCAAGCGCACCAC
CCGAAGCATTTTGGAGGACACCAACGTTGAGCTGAATGTTCCAAGGGCTT
TTGAAAGCGCCCGACTGCTTTTCTTTAGCGGTTTGAAGAAGGTGATGTGG
CCCATCTATATGGGTTTGCAAGTGCTGAAGAGCGTGCTCTTCGCCATGTT
CCTGCCAACCATCATCAGCAGTGTAAGCCGACTGATTGGCAAGGGCATCA
CTTCCGGCTCGGCTGGGTCGGTGCCGTTGTTTATCCGCCCCATTGAGCCG
CCACAAGAACTGGACTTCCGGGACAACAGCATGAATTTCGATGATGACAG
CAAATTTTCCCTGGCGGACGAGGGCAAAACGCCAGCCGGCTACGAGTACA
ATGCAGAGGCATCACAGCAGCAGGCGCAATATGCCCAGGTCAATGGGAAC
TCGGTGAACCAGGCCACTTTGTCGCGCTATGGAGGTCAGCAGATGATGCA
GGACACCTATCTGAGTGCTCTGCAGAGCATTGGCGCTGCCTCCTTCAAAA
ACTCCCAGAGCATGTCAGGATCCTTCAGCGCCGGAGCTGGTGGCGGAGCT
CCAGGAATGACGAAGAAACCAACGCCGGCCGTGATGAACACGTTCCAGAG
CTTCCAGAAGGTGCCCAGCTCGTCGCTTTTGCTGTCCAACTATGACCCCT
TCTACAGTCCACTATTGTCCCGCCTGGACTCGGTGTTTGCCCAGCTCAAA
TTGAATCCGGAGAACGAAGCTTGCCGCGAGAAACTCATCTGCCTGATGTA
CGCCAACCCCGCGAAGTATGCTCCGTACAGCAACCTGGTCTCAGCTCAAC
TCAGCAGGGAACTGAACGAGCTGCGGAAGCCTACTTCCGACAACCCGGAC
ATCCTGCGATTCTTCAAGTACATGCGAGCGGCGAAGGACGGTCAGGACGG
CGTCGACTGCGACGAGTCCTTCGCCAAGTGCAAGGAGCTGAAGGACCTCG
AGAACCCGGCAATGCTGTCCACCTACAACGACATCAACAAACTGGTCCAG
GCCCGCAAGCTGGCGGCAAGCTTTCTAGACCAT

BO12464.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Osi24-RA 1602 CG15589-PA 1..1599 17..1615 7995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Osi24-RA 2629 CG15589-RA 531..2129 17..1615 7995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6204445..6205110 17..682 3330 100 Plus
3R 32079331 3R 6205880..6206336 952..1408 2285 100 Plus
3R 32079331 3R 6206969..6207178 1406..1615 1050 100 Plus
3R 32079331 3R 6205657..6205819 794..956 815 100 Plus
3R 32079331 3R 6205483..6205598 680..795 580 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:51:38 has no hits.

BO12464.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:12 Download gff for BO12464.complete
Subject Subject Range Query Range Percent Splice Strand
CG15589-RA 529..2127 17..1615 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:04 Download gff for BO12464.complete
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 531..2129 17..1617 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:54 Download gff for BO12464.complete
Subject Subject Range Query Range Percent Splice Strand
CG15589-RA 529..2127 17..1617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:53 Download gff for BO12464.complete
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 531..2129 17..1617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:53 Download gff for BO12464.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6205658..6205819 795..956 100 -> Plus
3R 6204445..6205108 17..680 100 -> Plus
3R 6205484..6205597 681..794 100 -> Plus
3R 6205885..6206335 957..1407 100 -> Plus
3R 6206971..6207178 1408..1617 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:04 Download gff for BO12464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2030167..2030830 17..680 100 -> Plus
arm_3R 2031206..2031319 681..794 100 -> Plus
arm_3R 2031380..2031541 795..956 100 -> Plus
arm_3R 2031607..2032057 957..1407 100 -> Plus
arm_3R 2032693..2032900 1408..1617 99   Plus

BO12464.pep Sequence

Translation from 16 to 1633

> BO12464.pep
MKMGSQYIDGAKLKANSHRKRRCSPLLYGIILLCKVAMIPAAVPESELDA
GALYSQPLTTMAGQPRNDDTFRPILPIDISPEFISRNVFTKSGQYRVFQP
AESESDLRLAVAMRRRNFKHPSDSPRKQESESSAAAFKNQTITSIDAELK
GLEDLLVDYVEQFFSNGRYEPTPGLVLALQQNHSHPQSYTGKRTTRSILE
DTNVELNVPRAFESARLLFFSGLKKVMWPIYMGLQVLKSVLFAMFLPTII
SSVSRLIGKGITSGSAGSVPLFIRPIEPPQELDFRDNSMNFDDDSKFSLA
DEGKTPAGYEYNAEASQQQAQYAQVNGNSVNQATLSRYGGQQMMQDTYLS
ALQSIGAASFKNSQSMSGSFSAGAGGGAPGMTKKPTPAVMNTFQSFQKVP
SSSLLLSNYDPFYSPLLSRLDSVFAQLKLNPENEACREKLICLMYANPAK
YAPYSNLVSAQLSRELNELRKPTSDNPDILRFFKYMRAAKDGQDGVDCDE
SFAKCKELKDLENPAMLSTYNDINKLVQARKLAASFLDH

BO12464.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Osi24-PA 533 CG15589-PA 1..533 1..533 2724 100 Plus
Osi17-PB 648 CG15598-PB 548..643 408..505 259 44.9 Plus
Osi17-PA 648 CG15598-PA 548..643 408..505 259 44.9 Plus
Osi17-PD 750 CG15598-PD 650..745 408..505 259 44.9 Plus
Osi17-PC 750 CG15598-PC 650..745 408..505 259 44.9 Plus