Clone Sequence Records
BO12465.3prime Sequence
896 bp (783 high quality bases) assembled on 2006-05-08
> BO12465.3prime
ATGGTCTAGAAAGCTTGCCAGGGACTCCCGCAGGATGTCCTTAATGGCCT
GGGTTAGCGGAAATACAGGTTTCTCGCTGTATTTCAAGTTTGGCATAATG
CTGCATGAGTTCTTGAGATCATCGGTGTTCAGCGAGAAGACCATGACGCC
ACCCAGATTGAGGGATTTCACATAGTTCGCCTTGCAGGCGATACTCGTTT
GATTTTCGTACGATATCCACTCCTGCAGAGCGCTCAAATATGGCGAACAG
CTCTCGGCATCGTAGGACAAGTTTGGCTTGAAGAACTTGGTGACACACTC
ACAAGTTTCGGTCAGTGTGGTGAAGCCCAGTTGGCCACATTTACCGTAAC
CGGAAGCAGGAGCTCCTATGCGATGATTTAAAGGATTAACCAACGTAAAT
GAGTGGCCGTAGGTGGGCAGACCCACAACCAGTCGCTGTGGCTCCAGACC
GCTTTTTAGCCACCACTGAACCGTGTAATTGATGTTGAACGTGGCCATTA
GCGAACGTTCCTGCGAGCGGGCATAAAGCGGAGCATTTAAGCCGGTAAAT
GGTGTATCCTCGCGGTAGAAGTGGAAATCATAGGACATTAGATTTACATA
ATCTGCGTACAGATTTATCTCTCGGATGTCGTAGGCATAGAAGGCGATTC
CCTCGGGAGCAGCCACCGCCAGCGAGAGAATATCATTGGTACGCTTTTCG
CGCCGCCACTCCGTTCTAATCTCGTAAAGCAGCTGCGAGAGATGCATTCG
CTCACGATCGTAGGCACTCGGAAACTCCCAGTCGAGATCGATGCCATCCA
AACTGGGATAGGTGCGCAATATTTCCCGGAGGGAGCGCANGAACAACTTT
CGCATGGCGTGGTTCGCCACCATGAGGGCAAATGACCGCCCACTGT
BO12465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3044-PA | 1299 | CG3044-RA | 419..1296 | 896..19 | 4371 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht11-RA | 1576 | CG3044-RA | 465..1342 | 896..19 | 4379 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6848549..6849053 | 392..896 | 2514 | 99.8 | Plus |
| X | 23542271 | X | 6848111..6848486 | 19..394 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:41:51 has no hits.
BO12465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:38 Download gff for
BO12465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3044-PA | 419..1299 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:40 Download gff for
BO12465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3044-PA | 419..1299 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:58 Download gff for
BO12465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 435..1312 | 19..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:36 Download gff for
BO12465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 465..1342 | 19..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:36 Download gff for
BO12465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6848111..6848486 | 19..394 | 100 | <- | Plus |
| X | 6848552..6849053 | 395..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:58 Download gff for
BO12465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6742144..6742519 | 19..394 | 100 | <- | Plus |
| arm_X | 6742585..6743086 | 395..896 | 99 | | Plus |
BO12465.5prime Sequence
845 bp (833 high quality bases) assembled on 2006-05-08
> BO12465.5prime
GAAGTTATCACCCTACATGGGGAACTACGAGAAACTGGATGGCAGTTCCG
CGGGGAGGATTACGGATGAGCTGTCCCGTAAGGAACAACGGAATTGCAGC
CTGCGAACTTTGGTCTGCTGGAGTGCTTTGTTGTTCTCTTTGTTGTGCCT
TTGCCTCGGGTTCATCGGCCTGGGATTACTCGGCATCCAAACTGGGGAAG
TGCACAAGGTGGGGCAGCGGTTGGTGTGCTACTACGCAAGCGATGGCACC
CACAATCTCAGCCTTTTGGATGTTCCCGGCGACCTGTGCACCCACATCAA
TATCGGACCCGCCACTTTGGATAATGCCACCATAGTCCTTCCCGATACCC
TCAGACAGGTACTACAGAACGACACCCGATCCTTTCGTGCTGCCCATCCG
CAGGTTCACCTGCTTCTCTGGATCGGTGGCGCCGACAGTGGGCGGTCATT
TGCCCTCATGGTGGCGAACCACGCCATGCGAAAGTTGTTCCTGCGCTCCC
TCCGGGAAATATTGCGCACCTATCCCAGTTTGGATGGCATCGATCTCGAC
TGGGAGTTTCCGAGTGCCTACGATCGTGAGCGAATGCATCTCTCGCAGCT
GCTTTACGAGATTAGAACGGAGTGGCGGCGCGAAAAGCGTACCAATGATA
TTCTCTCGCTGGCGGTGGCTGCTCCCGAGGGAATCGCCTTCTATGCCTAC
GACATCCGAGAGATAAATCTGTACGCAGATTATGTAAATCTAATGTCCTA
TGATTTCCACTTCTACCGCGAGGATACACCATTTACCGGCTTAAATGCTC
CGCTTTATGCCCGCTCGCANGAACGTTCGCTAATGGCCACGTTCA
BO12465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3044-PA | 1299 | CG3044-RA | 1..829 | 17..845 | 4126 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht11-RA | 1576 | CG3044-RA | 47..875 | 17..845 | 4134 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6848643..6849471 | 845..17 | 4134 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:16:38 has no hits.
BO12465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:39 Download gff for
BO12465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3044-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:42 Download gff for
BO12465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3044-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:37 Download gff for
BO12465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 6..844 | 6..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:54 Download gff for
BO12465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 36..874 | 6..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:54 Download gff for
BO12465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6848644..6849482 | 6..844 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:37 Download gff for
BO12465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6742677..6743515 | 6..844 | 99 | | Minus |
BO12465.complete Sequence
1330 bp assembled on 2008-08-14
GenBank Submission: FJ632449
> BO12465.complete
GAAGTTATCAGTCGACATGGGGAACTACGAGAAACTGGATGGCAGTTCCG
CGGGGAGGATTACGGATGAGCTGTCCCGTAAGGAACAACGGAATTGCAGC
CTGCGAACTTTGGTCTGCTGGAGTGCTTTGTTGTTCTCTTTGTTGTGCCT
TTGCCTCGGGTTCATCGGCCTGGGATTACTCGGCATCCAAACTGGGGAAG
TGCACAAGGTGGGGCAGCGGTTGGTGTGCTACTACGCAAGCGATGGCACC
CACAATCTCAGCCTTTTGGATGTTCCCGGCGACCTGTGCACCCACATCAA
TATCGGACCCGCCACTTTGGATAATGCCACCATAGTCCTTCCCGATACCC
TCAGACAGGTACTACAGAACGACACCCGATCCTTTCGTGCTGCCCATCCG
CAGGTTCACCTGCTTCTCTGGATCGGTGGCGCCGACAGTGGGCGGTCATT
TGCCCTCATGGTGGCGAACCACGCCATGCGAAAGTTGTTCCTGCGCTCCC
TCCGGGAAATATTGCGCACCTATCCCAGTTTGGATGGCATCGATCTCGAC
TGGGAGTTTCCGAGTGCCTACGATCGTGAGCGAATGCATCTCTCGCAGCT
GCTTTACGAGATTAGAACGGAGTGGCGGCGCGAAAAGCGTACCAATGATA
TTCTCTCGCTGGCGGTGGCTGCTCCCGAGGGAATCGCCTTCTATGCCTAC
GACATCCGAGAGATAAATCTGTACGCAGATTATGTAAATCTAATGTCCTA
TGATTTCCACTTCTACCGCGAGGATACACCATTTACCGGCTTAAATGCTC
CGCTTTATGCCCGCTCGCAGGAACGTTCGCTAATGGCCACGTTCAACATC
AATTACACGGTTCAGTGGTGGCTAAAAAGCGGTCTGGAGCCACAGCGACT
GGTTGTGGGTCTGCCCACCTACGGCCACTCATTTACGTTGGTTAATCCTT
TAAATCATCGCATAGGAGCTCCTGCTTCCGGTTACGGTAAATGTGGCCAA
CTGGGCTTCACCACACTGACCGAAACTTGTGAGTGTGTCACCAAGTTCTT
CAAGCCAAACTTGTCCTACGATGCCGAGAGCTGTTCGCCATATTTGAGCG
CTCTGCAGGAGTGGATATCGTACGAAAATCAAACGAGTATCGCCTGCAAG
GCGAACTATGTGAAATCCCTCAATCTGGGTGGCGTCATGGTCTTCTCGCT
GAACACCGATGATCTCAAGAACTCATGCAGCATTATGCCAAACTTGAAAT
ACAGCGAGAAACCTGTATTTCCGCTAACCCAGGCCATTAAGGACATCCTG
CGGGAGTCCCTGGCAAGCTTTCTAGACCAT
BO12465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht11-RA | 1299 | CG3044-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht11-RA | 1576 | CG3044-RA | 47..1342 | 17..1312 | 6480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6848549..6849471 | 939..17 | 4615 | 100 | Minus |
| X | 23542271 | X | 6848111..6848486 | 1312..937 | 1880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:28 has no hits.
BO12465.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:47 Download gff for
BO12465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 4..1312 | 2..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:37 Download gff for
BO12465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 17..1312 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:10 Download gff for
BO12465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 17..1312 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:08 Download gff for
BO12465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 47..1342 | 17..1314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:08 Download gff for
BO12465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6848108..6848486 | 937..1314 | 99 | <- | Minus |
| X | 6848552..6849471 | 17..936 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:37 Download gff for
BO12465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6742141..6742519 | 937..1314 | 99 | <- | Minus |
| arm_X | 6742585..6743504 | 17..936 | 100 | | Minus |
BO12465.pep Sequence
Translation from 16 to 1330
> BO12465.pep
MGNYEKLDGSSAGRITDELSRKEQRNCSLRTLVCWSALLFSLLCLCLGFI
GLGLLGIQTGEVHKVGQRLVCYYASDGTHNLSLLDVPGDLCTHINIGPAT
LDNATIVLPDTLRQVLQNDTRSFRAAHPQVHLLLWIGGADSGRSFALMVA
NHAMRKLFLRSLREILRTYPSLDGIDLDWEFPSAYDRERMHLSQLLYEIR
TEWRREKRTNDILSLAVAAPEGIAFYAYDIREINLYADYVNLMSYDFHFY
REDTPFTGLNAPLYARSQERSLMATFNINYTVQWWLKSGLEPQRLVVGLP
TYGHSFTLVNPLNHRIGAPASGYGKCGQLGFTTLTETCECVTKFFKPNLS
YDAESCSPYLSALQEWISYENQTSIACKANYVKSLNLGGVMVFSLNTDDL
KNSCSIMPNLKYSEKPVFPLTQAIKDILRESLASFLDH
BO12465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht11-PA | 432 | CG3044-PA | 1..432 | 1..432 | 2283 | 100 | Plus |
| Cht6-PF | 1367 | CG43374-PF | 31..408 | 68..432 | 466 | 31.4 | Plus |
| Cht6-PG | 1580 | CG43374-PG | 31..408 | 68..432 | 466 | 31.4 | Plus |
| Cht6-PH | 2225 | CG43374-PH | 31..408 | 68..432 | 466 | 31.4 | Plus |
| Cht6-PI | 2574 | CG43374-PI | 31..408 | 68..432 | 466 | 31.4 | Plus |
