Clone Sequence Records
BO12476.3prime Sequence
943 bp (832 high quality bases) assembled on 2006-05-08
> BO12476.3prime
ATGGTCTAGAAAGCTTGCACTCCATTCGGATCGTATCATATCAGCCGCCT
TTTCCCCAATCATAAATGCCGCTGCATTTGTGTGAGCGGTGGGTGGAAAC
GGTATGATACTGGTGTCCACCACCCGAAGTTTCCTCACTCCATGCACCTT
TAGCTGATGATTGACCACGGTGGTGGGATCACTTTCGGCGCCCATGCGAC
AGGTGGCCACCTGGTGGTGCAGTGTGTAGGATAGCGTGCGTATGGAGCAC
CGCCAATAATCATCCGAGGCGAATTCGTAGTTCTCACAACCTGGCACCGG
CTTGTCCAACAATCTGGTTCCAATCGCCTGCATGGCCGGCATCTTGGAGA
TTCTGAGTGCCTCCTTAATGCCCTCCAGCAAGTTCTCCACATCCGACGGA
GCCGAAAAGTACTTGGGATCGATGCGTGGCCACTCGAGTGGATTGCGATT
GTGCAGCCAGAGGCGACCCACGGAGGCGGGCTTGAAGTGCATGATGAGGA
AGCTAAAGTGATCCTGCTGCCTCAACGTCAGATTCTTGTACATTTTCTCG
TAGATCTCGGGCTTAAAGTTGGCTCCTTTGGCCAGGGCAGTGCCATCATC
GCTAGCCAGGCTGCCGGCCACTTGGATGAGTTCCACATCGGGTTGGGTGG
CCGGACTCTTGCCCGACGGCACCTTGATGAAGGTGAGCGTCTCTACGCCA
CCGATACTGGACAGAAAGGTGTCTGCCCGGCCCAGTAGAAACTCCTTGGC
CACCGGTGCGCCCAATTGAGCGGCAAATAGAGTCTGGCCCGTTGTGTTGG
TCACAAAAGTGGGTCCAAAGTGGCACATGTGATCGAACATTCTCTTACCC
ACTGGCAGTGCCTTGATCAGGGGTATTCCAATGGCCTTGAGGTTATCTTC
TGGCCCATCCCCGACAGCATCAGCAACTGTGGAGAGTTGAAAG
BO12476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-PA | 1851 | CG9522-RA | 960..1848 | 907..19 | 4445 | 100 | Minus |
| CG12539-PA | 1881 | CG12539-RA | 1621..1860 | 270..31 | 1150 | 99.1 | Minus |
| CG12539-PA | 1881 | CG12539-RA | 1005..1103 | 883..785 | 445 | 97.9 | Minus |
| CG9522-PA | 1851 | CG9522-RA | 925..959 | 941..907 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-RA | 2191 | CG9522-RA | 955..1878 | 941..19 | 4595 | 99.9 | Minus |
| CG12539-RA | 2085 | CG12539-RA | 1299..1894 | 617..22 | 1230 | 81.1 | Minus |
| CG12539-RA | 2085 | CG12539-RA | 970..1128 | 942..785 | 605 | 93.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14846785..14847708 | 19..941 | 4570 | 99.9 | Plus |
| X | 23542271 | X | 14842808..14843403 | 22..617 | 1225 | 80.4 | Plus |
| X | 23542271 | X | 14843574..14843732 | 785..942 | 580 | 92.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:25:30 has no hits.
BO12476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:59 Download gff for
BO12476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-PA | 923..1851 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:08 Download gff for
BO12476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-PA | 923..1851 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:30 Download gff for
BO12476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 953..1878 | 19..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:44 Download gff for
BO12476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 953..1878 | 19..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:44 Download gff for
BO12476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14846785..14847709 | 19..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:30 Download gff for
BO12476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14740818..14741742 | 19..943 | 99 | | Plus |
BO12476.5prime Sequence
882 bp (815 high quality bases) assembled on 2006-05-08
> BO12476.5prime
GAAGTTATCACCCTACATGGAGAAGCTGCTGCTGACCCAGCTTCTGTTTC
TGCTCCTGATCCCACTGATCCACTCCCAAAGGAGCTCCCAACTGGACGAA
CTGCGGCGACTGGGATTGGGAAATGTCGTCAATGTGCCATTCTTCAGCGA
TGTTCCCCAAAGAAACTATGACTTCATAATAGTTGGAGGCGGAGCTGCTG
GCTGTACATTGGCCGCTCGTCTCTCGGAGAATCCCAATTGGAGTGTGTTC
CTTATCGAAGCCGGAGGAGTGGAGAACATAGTGCATCAGGTGCCATTACT
GGCGGCCCATTTGCAGTCGACTGCCTCCAATTGGGGCTACAACTCGACGC
CACAACGCCATGCCTGTCGTGGAATGCCCGATAACAAGTGTGCCCTGCCG
AGGGGCAAAGTTCTGGGTGGCACTAGCTCGATCAATTACATGATCTACAA
TCGGGGCAATCGTAGGGATTTTGATGCCTGGGCGGCAGCTGGAAATCCCG
GCTGGAGTTACGACGAGGTGTTGCCCTACTTTCTGCGAAGTGAGCATGCA
CAGCTTCAGGGATTGGAGCACTCGCCATATCACAATCACAGTGGTCCCTT
GAGTGTGGAGGATGTGCGACACCGGACGCGACTTGCACACGCCTACATTA
GAGCTGCCCAGGAGGCGGGTCATCCGAGAACGGACTACAATGGTGAATCC
CAGCTGGGCGTTTCCTATGTGCAGGCCACCACACTGAAGGGCAGGAGGCA
CAGTGCCTTTCGTGCCTATATTGAGCCCATAAGATCTAGGCGTCATAATC
TGCACATTCTAACACTGGCTAGAGTCACCCGAGTTCTGATAGATGCAGCC
ACCAAGTCCGCCTATGGAGTGGAGTTGACCCA
BO12476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-PA | 1851 | CG9522-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
| CG12539-PA | 1881 | CG12539-RA | 386..614 | 381..609 | 945 | 96.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-RA | 2191 | CG9522-RA | 30..896 | 16..882 | 4335 | 100 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 194..639 | 164..609 | 1215 | 85.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14847767..14848497 | 882..152 | 3655 | 100 | Minus |
| X | 23542271 | X | 14844063..14844508 | 609..164 | 1180 | 84.3 | Minus |
| X | 23542271 | X | 14848643..14848779 | 152..16 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:25:57 has no hits.
BO12476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:59 Download gff for
BO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:09 Download gff for
BO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:59 Download gff for
BO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 30..895 | 16..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:21 Download gff for
BO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 30..895 | 16..881 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:21 Download gff for
BO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14847768..14848496 | 153..881 | 100 | <- | Minus |
| X | 14848643..14848779 | 16..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:59 Download gff for
BO12476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14741801..14742529 | 153..881 | 100 | <- | Minus |
| arm_X | 14742676..14742812 | 16..152 | 100 | | Minus |
BO12476.complete Sequence
1882 bp assembled on 2008-08-14
GenBank Submission: FJ632450
> BO12476.complete
GAAGTTATCAGTCGACATGGAGAAGCTGCTGCTGACCCAGCTTCTGTTTC
TGCTCCTGATCCCACTGATCCACTCCCAAAGGAGCTCCCAACTGGACGAA
CTGCGGCGACTGGGATTGGGAAATGTCGTCAATGTGCCATTCTTCAGCGA
TGTTCCCCAAAGAAACTATGACTTCATAATAGTTGGAGGCGGAGCTGCTG
GCTGTACATTGGCCGCTCGTCTCTCGGAGAATCCCAATTGGAGTGTGTTC
CTTATCGAAGCCGGAGGAGTGGAGAACATAGTGCATCAGGTGCCATTACT
GGCGGCCCATTTGCAGTCGACTGCCTCCAATTGGGGCTACAACTCGACGC
CACAACGCCATGCCTGTCGTGGAATGCCCGATAACAAGTGTGCCCTGCCG
AGGGGCAAAGTTCTGGGTGGCACTAGCTCGATCAATTACATGATCTACAA
TCGGGGCAATCGTAGGGATTTTGATGCCTGGGCGGCAGCTGGAAATCCCG
GCTGGAGTTACGACGAGGTGTTGCCCTACTTTCTGCGAAGTGAGCATGCA
CAGCTTCAGGGATTGGAGCACTCGCCATATCACAATCACAGTGGTCCCTT
GAGTGTGGAGGATGTGCGACACCGGACGCGACTTGCACACGCCTACATTA
GAGCTGCCCAGGAGGCGGGTCATCCGAGAACGGACTACAATGGTGAATCC
CAGCTGGGCGTTTCCTATGTGCAGGCCACCACACTGAAGGGCAGGAGGCA
CAGTGCCTTTCGTGCCTATATTGAGCCCATAAGATCTAGGCGTCATAATC
TGCACATTCTAACACTGGCTAGAGTCACCCGAGTTCTGATAGATGCAGCC
ACCAAGTCCGCCTATGGAGTGGAGTTGACCCATCAGGGCAGAAGCTTTAA
GGTGAAAGCCCGCAAGGAAATCATTCTATCGGCGGGTGCCTTCAACTCTC
CACAGTTGCTGATGCTGTCGGGGATTGGGCCAGAAGATAACCTCAAGGCC
ATTGGAATACCCCTGATCAAGGCACTGCCAGTGGGTAAGAGAATGTTCGA
TCACATGTGCCACTTTGGACCCACTTTTGTGACCAACACAACGGGCCAGA
CTCTATTTGCCGCTCAATTGGGCGCACCGGTGGCCAAGGAGTTTCTACTG
GGCCGGGCAGACACCTTTCTGTCCAGTATCGGTGGCGTAGAGACGCTCAC
CTTCATCAAGGTGCCGTCGGGCAAGAGTCCGGCCACCCAACCCGATGTGG
AACTCATCCAAGTGGCCGGCAGCCTGGCTAGCGATGATGGCACTGCCCTG
GCCAAAGGAGCCAACTTTAAGCCCGAGATCTACGAGAAAATGTACAAGAA
TCTGACGTTGAGGCAGCAGGATCACTTTAGCTTCCTCATCATGCACTTCA
AGCCCGCCTCCGTGGGTCGCCTCTGGCTGCACAATCGCAATCCACTCGAG
TGGCCACGCATCGATCCCAAGTACTTTTCGGCTCCGTCGGATGTGGAGAA
CTTGCTGGAGGGCATTAAGGAGGCACTCAGAATCTCCAAGATGCCGGCCA
TGCAGGCGATTGGAACCAGATTGTTGGACAAGCCGGTGCCAGGTTGTGAG
AACTACGAATTCGCCTCGGATGATTATTGGCGGTGCTCCATACGCACGCT
ATCCTACACACTGCACCACCAGGTGGCCACCTGTCGCATGGGCGCCGAAA
GTGATCCCACCACCGTGGTCAATCATCAGCTAAAGGTGCATGGAGTGAGG
AAACTTCGGGTGGTGGACACCAGTATCATACCGTTTCCACCCACCGCTCA
CACAAATGCAGCGGCATTTATGATTGGGGAAAAGGCGGCTGATATGATAC
GATCCGAATGGAGTGCAAGCTTTCTAGACCAT
BO12476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-RA | 1851 | CG9522-PA | 1..1848 | 17..1864 | 9240 | 100 | Plus |
| CG12539-RA | 1881 | CG12539-PA | 1274..1869 | 1266..1861 | 1225 | 80.4 | Plus |
| CG12539-RA | 1881 | CG12539-PA | 169..614 | 164..609 | 1180 | 84.3 | Plus |
| CG12539-RA | 1881 | CG12539-PA | 928..1103 | 923..1098 | 640 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-RA | 2191 | CG9522-RA | 30..1878 | 16..1864 | 9245 | 100 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 1299..1894 | 1266..1861 | 1225 | 80.4 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 194..639 | 164..609 | 1180 | 84.3 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 953..1128 | 923..1098 | 640 | 90.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14846785..14848497 | 1864..152 | 8565 | 100 | Minus |
| X | 23542271 | X | 14842808..14843403 | 1861..1266 | 1225 | 80.4 | Minus |
| X | 23542271 | X | 14844063..14844508 | 609..164 | 1180 | 84.3 | Minus |
| X | 23542271 | X | 14848643..14848779 | 152..16 | 685 | 100 | Minus |
| X | 23542271 | X | 14843574..14843749 | 1098..923 | 640 | 90.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:59:07 has no hits.
BO12476.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:57 Download gff for
BO12476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 14..1870 | 7..1864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:01 Download gff for
BO12476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 31..1878 | 17..1866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:10 Download gff for
BO12476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 27..1874 | 17..1866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:12 Download gff for
BO12476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 31..1878 | 17..1866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:12 Download gff for
BO12476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14846782..14848496 | 153..1866 | 99 | <- | Minus |
| X | 14848643..14848778 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:01 Download gff for
BO12476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14740815..14742529 | 153..1866 | 99 | <- | Minus |
| arm_X | 14742676..14742811 | 17..152 | 100 | | Minus |
BO12476.pep Sequence
Translation from 16 to 1882
> BO12476.pep
MEKLLLTQLLFLLLIPLIHSQRSSQLDELRRLGLGNVVNVPFFSDVPQRN
YDFIIVGGGAAGCTLAARLSENPNWSVFLIEAGGVENIVHQVPLLAAHLQ
STASNWGYNSTPQRHACRGMPDNKCALPRGKVLGGTSSINYMIYNRGNRR
DFDAWAAAGNPGWSYDEVLPYFLRSEHAQLQGLEHSPYHNHSGPLSVEDV
RHRTRLAHAYIRAAQEAGHPRTDYNGESQLGVSYVQATTLKGRRHSAFRA
YIEPIRSRRHNLHILTLARVTRVLIDAATKSAYGVELTHQGRSFKVKARK
EIILSAGAFNSPQLLMLSGIGPEDNLKAIGIPLIKALPVGKRMFDHMCHF
GPTFVTNTTGQTLFAAQLGAPVAKEFLLGRADTFLSSIGGVETLTFIKVP
SGKSPATQPDVELIQVAGSLASDDGTALAKGANFKPEIYEKMYKNLTLRQ
QDHFSFLIMHFKPASVGRLWLHNRNPLEWPRIDPKYFSAPSDVENLLEGI
KEALRISKMPAMQAIGTRLLDKPVPGCENYEFASDDYWRCSIRTLSYTLH
HQVATCRMGAESDPTTVVNHQLKVHGVRKLRVVDTSIIPFPPTAHTNAAA
FMIGEKAADMIRSEWSASFLDH
BO12476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-PA | 616 | CG9522-PA | 1..616 | 1..616 | 3228 | 100 | Plus |
| CG12539-PA | 626 | CG12539-PA | 9..623 | 10..615 | 2282 | 71.4 | Plus |
| CG6142-PA | 616 | CG6142-PA | 48..607 | 51..615 | 1262 | 44.6 | Plus |
| CG9519-PA | 622 | CG9519-PA | 39..618 | 18..614 | 1226 | 43.3 | Plus |
| CG9521-PA | 621 | CG9521-PA | 60..616 | 51..614 | 1181 | 42.2 | Plus |
