Clone Sequence Records
BO12482.3prime Sequence
824 bp (753 high quality bases) assembled on 2006-05-08
> BO12482.3prime
ATGGTCTAGAAAGCTTGCAACTATCATCTCGAGGTCGCGGGCGTAGCTGA
GCACCTGCTCGGCGAGTTCCTCGGAGGGCAGGAGCTCCTTGGGTTTGACG
CTACGGTCCGTGAAGCTGTAGTCGCCGCTAGCCTCCAGTTTCCATTGACG
CTTCGCGCCGAAGGCCTTGATCTCGTCGGGGACGCGCAGGTTGAGCCGCT
TGGCTGCATCCTTGGCGGAGATCTTGTCGTAGGACTTCTCGATGCAGGCA
CCAATTTCATCGCGCACCGTTTCCAACAGAAGATCCATAAAGTAGCTATA
CACCTCGACGGGCACCGTCGACTTGGCCTGAAAGATCTTGTTGTAGCGTC
CCTCCATGATGTACTGCTCGAGCGCCAGGATGGGCCGAATGAACTGATTG
TGCTGGATGACGTCCACGGAGAGCAGCTCCAGTTCCGTGTGAAAGTCGGA
TACCCGGTTGCCAGACAAGAGGTACAGCAGATTCAGACCGAGCAGCTTAT
ACTTGCTCTCCGATTCGCCAATGATCTTAGCGTAGTCATAGTAATAGCAC
TTCAGCTGCGCCATGTAGCGCTCGAAGGCGAGCAGGTCCTTGCTGAGCAC
GCTATGCTCCACGGCCACCTCAAGCACGCTCCTAGCCAGGATCAATTGCT
TCTTGGAGCTCTGGGCATCGTTTCCGTCCGTCGGCAGGAAGGCCATCTTC
ACGAGCGCTACTTTCAGTTGATCCAGCAGCTGGCCGCATTTGACGGTGTT
TGGTGGCCGCTTTGACCACTCGGCGGTCAGTTCTTTGTACAGCGATTCCA
CGTTGGCCATGTCGACTGATAACT
BO12482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4157-PA | 795 | Rpn12-RA | 1..792 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-RA | 995 | CG4157-RA | 73..864 | 810..19 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16583100..16583891 | 810..19 | 3960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:41:28 has no hits.
BO12482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:08 Download gff for
BO12482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:23 Download gff for
BO12482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4157-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:56 Download gff for
BO12482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 71..868 | 14..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:33 Download gff for
BO12482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 71..868 | 14..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:33 Download gff for
BO12482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16583098..16583895 | 14..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:56 Download gff for
BO12482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16576198..16576995 | 14..813 | 99 | | Minus |
BO12482.5prime Sequence
824 bp (823 high quality bases) assembled on 2006-05-08
> BO12482.5prime
GAAGTTATCACCCTACATGGCCAACGTGGAATCGCTGTACAAAGAACTGA
CCGCCGAGTGGTCAAAGCGGCCACCAAACACCGTCAAATGCGGCCAGCTG
CTGGATCAACTGAAAGTAGCGCTCGTGAAGATGGCCTTCCTGCCGACGGA
CGGAAACGATGCCCAGAGCTCCAAGAAGCAATTGATCCTGGCTAGGAGCG
TGCTTGAGGTGGCCGTGGAGCATAGCGTGCTCAGCAAGGACCTGCTCGCC
TTCGAGCGCTACATGGCGCAGCTGAAGTGCTATTACTATGACTACGCTAA
GATCATTGGCGAATCGGAGAGCAAGTATAAGCTGCTCGGTCTGAATCTGC
TGTACCTCTTGTCTGGCAACCGGGTATCCGACTTTCACACGGAACTGGAG
CTGCTCTCCGTGGACGTCATCCAGCACAATCAGTTCATTCGGCCCATCCT
GGCGCTCGAGCAGTACATCATGGAGGGACGCTACAACAAGATCTTTCAGG
CCAAGTCGACGGTGCCCGTCGAGGTGTATAGCTACTTTATGGATCTTCTG
TTGGAAACGGTGCGCGATGAAATTGGTGCCTGCATCGAGAAGTCCTACGA
CAAGATCTCCGCCAAGGATGCAGCCAAGCGGCTCAACCTGCGCGTCCCCG
ACGAGATCAAGGCCTTCGGCGCGAAGCGTCAATGGAAACTGGAGGCTAGC
GGCGACTACAGCTTCACGGACCGTAGCGTCAAACCCAAGGAGCTCCTGCC
CTCCGAGGAACTCGCCGAGCAGGTGCTCAGCTACGCCCGCGACCTCGAGA
TGATAGTTGCAAGCTTTCTAGACC
BO12482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4157-PA | 795 | Rpn12-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-RA | 995 | CG4157-RA | 73..864 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16583100..16583891 | 17..808 | 3960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:00:58 has no hits.
BO12482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:09 Download gff for
BO12482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:24 Download gff for
BO12482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4157-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:02 Download gff for
BO12482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 73..868 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:38 Download gff for
BO12482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 73..868 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:38 Download gff for
BO12482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16583100..16583895 | 17..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:02 Download gff for
BO12482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16576200..16576995 | 17..813 | 99 | | Plus |
BO12482.complete Sequence
826 bp assembled on 2006-10-11
GenBank Submission: FJ632451
> BO12482.complete
GAAGTTATCAGTCGACATGGCCAACGTGGAATCGCTGTACAAAGAACTGA
CCGCCGAGTGGTCAAAGCGGCCACCAAACACCGTCAAATGCGGCCAGCTG
CTGGATCAACTGAAAGTAGCGCTCGTGAAGATGGCCTTCCTGCCGACGGA
CGGAAACGATGCCCAGAGCTCCAAGAAGCAATTGATCCTGGCTAGGAGCG
TGCTTGAGGTGGCCGTGGAGCATAGCGTGCTCAGCAAGGACCTGCTCGCC
TTCGAGCGCTACATGGCGCAGCTGAAGTGCTATTACTATGACTACGCTAA
GATCATTGGCGAATCGGAGAGCAAGTATAAGCTGCTCGGTCTGAATCTGC
TGTACCTCTTGTCTGGCAACCGGGTATCCGACTTTCACACGGAACTGGAG
CTGCTCTCCGTGGACGTCATCCAGCACAATCAGTTCATTCGGCCCATCCT
GGCGCTCGAGCAGTACATCATGGAGGGACGCTACAACAAGATCTTTCAGG
CCAAGTCGACGGTGCCCGTCGAGGTGTATAGCTACTTTATGGATCTTCTG
TTGGAAACGGTGCGCGATGAAATTGGTGCCTGCATCGAGAAGTCCTACGA
CAAGATCTCCGCCAAGGATGCAGCCAAGCGGCTCAACCTGCGCGTCCCCG
ACGAGATCAAGGCCTTCGGCGCGAAGCGTCAATGGAAACTGGAGGCTAGC
GGCGACTACAGCTTCACGGACCGTAGCGTCAAACCCAAGGAGCTCCTGCC
CTCCGAGGAACTCGCCGAGCAGGTGCTCAGCTACGCCCGCGACCTCGAGA
TGATAGTTGCAAGCTTTCTAGACCAT
BO12482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-RA | 795 | CG4157-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-RA | 995 | CG4157-RA | 73..864 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16583100..16583891 | 17..808 | 3960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:28:47 has no hits.
BO12482.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:13 Download gff for
BO12482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:16 Download gff for
BO12482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 116..913 | 14..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:35 Download gff for
BO12482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 73..864 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:14 Download gff for
BO12482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 116..913 | 14..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:48 Download gff for
BO12482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 73..864 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:48 Download gff for
BO12482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16583100..16583891 | 17..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:35 Download gff for
BO12482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16576200..16576991 | 17..810 | 99 | | Plus |
BO12482.pep Sequence
Translation from 16 to 826
> BO12482.pep
MANVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQ
SSKKQLILARSVLEVAVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGES
ESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQHNQFIRPILALEQY
IMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKISAK
DAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDRSVKPKELLPSEELA
EQVLSYARDLEMIVASFLDH
BO12482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-PA | 264 | CG4157-PA | 1..264 | 1..264 | 1328 | 100 | Plus |
| Rpn12R-PA | 262 | CG11552-PA | 1..262 | 4..264 | 660 | 49.6 | Plus |
