Clone Sequence Records
BO12483.3prime Sequence
867 bp (839 high quality bases) assembled on 2006-05-08
> BO12483.3prime
CCGTAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTGCAAACCGTTTGA
GTTGCTTTTTCAGCTCCATTTTCTTCCATTTCGGCAGCTCGTCAAATTCA
TAAAAGGACATATTAAACACTGACACAAAATCATCGTGTGTTAGGTGAAC
CTCCCTCTTGAGCGGATTAATATCTGGTGGCAGCATATCCATTTCCTGGA
TGAGCACGGTTAATGGATACTTTTTGTGACCATCAAAGTCCTTCTGTCTG
TTGTTCAGGATTAGAGCCGATCCTTCGCTTGCGAAGCAACAATTGCTGGT
CACTTTATTTCCCAGATCCTTGCGCATTTTCTCGTAGGAATGGAAGTTCT
TGCCGTAATCGTTTTGCCAGGACTCGAAGAATCCCTTGAAAACATTTGGC
TCCTGAAACTGCCTGACCACGGCCAACGCTGTCGCTGATCTGCGTCCGAA
TGGAGCATTTTGGACATAACTTTGGGCAATCGCTGTGTAGCGTTCCTGGT
TTGGGGCCTGCGATCCCAGCCAGACGTAGGTGAGGCTCCCAGTGTCCAGA
ATATAGGTGCAATCCGAACTGAGATCCTGCTGATCGAATCCGAGAATCTC
CTCGTATCTCAGCGAACTCTGTTGCCACCATACCAGAAATAGTTGTACAG
GAGGTCTCGGTTTACTCGGAACACTGGTGTTTAGGTAACAATTATTGCTG
AGAGTGGGTGAAATGTTACCACCATTGGAGCTACCATTGCACATGCTGCC
GGCGCCACTGCTGCTACTGGTGCTGCTGGAACATGAGTTCCCATTTCCGT
TGATCACTAGAGTTTGGTTGAAGTACATGGCCACCGATTGCCAGAACTCC
TTACTTTCCTTTGCTTC
BO12483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6433-PA | 2664 | qua-RA | 1840..2649 | 861..52 | 4050 | 100 | Minus |
CG6433-PB | 2667 | qua-RB | 1843..2652 | 861..52 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qua-RC | 3318 | CG6433-RC | 2339..3153 | 861..47 | 4060 | 99.9 | Minus |
qua-RB | 3306 | CG6433-RB | 2327..3141 | 861..47 | 4060 | 99.9 | Minus |
qua-RA | 3266 | CG6433-RA | 2287..3101 | 861..47 | 4060 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17487402..17487914 | 349..861 | 2565 | 100 | Plus |
2L | 23513712 | 2L | 17487138..17487339 | 149..350 | 1010 | 100 | Plus |
2L | 23513712 | 2L | 17486971..17487076 | 47..152 | 515 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:55:39 has no hits.
BO12483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:10 Download gff for
BO12483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-PA | 1834..2659 | 40..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:26 Download gff for
BO12483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6433-PB | 1837..2662 | 40..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:30 Download gff for
BO12483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-RA | 2281..3106 | 40..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:07 Download gff for
BO12483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-RA | 2281..3106 | 40..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:07 Download gff for
BO12483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17486964..17487074 | 40..150 | 96 | <- | Plus |
2L | 17487140..17487337 | 151..348 | 100 | <- | Plus |
2L | 17487402..17487920 | 349..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:30 Download gff for
BO12483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17486964..17487074 | 40..150 | 96 | <- | Plus |
arm_2L | 17487140..17487337 | 151..348 | 100 | <- | Plus |
arm_2L | 17487402..17487920 | 349..867 | 99 | | Plus |
BO12483.5prime Sequence
825 bp (790 high quality bases) assembled on 2006-05-08
> BO12483.5prime
GAAGTTATCACTCTACATGCCGCCGTTTAATTTCATCAAGCAGGAGATCC
GTCCCAACACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAGGTG
GCTAAACATGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCGCCT
GGAGGCGGTACAAAGATCACATTATGGCACCTTCTACGATAGCTGCGCCT
ACATTATCTATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAAACC
ATCACACGCGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCACTA
CTGGCTGGGCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTCATA
AAATCCAGGAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTACCGA
GAGACCCAGAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAAGGG
TTACGATGTTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCACGAC
TTTTTCAATTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCCACC
ATCGATTGGTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAACGGA
TAATCTTACCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAACGAC
GAAGTGCCCTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATCACT
ATAGTCGATGATGGATATGAGCAGGCCATGTCCCAGGAGCACAAGGAGCT
GTGGAACACCATGCTTCCGCTAAAGAAACGCATGGTCTGTCAGGCCAGTC
AGTTGGTCAGCGAATACGCCGACTA
BO12483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6433-PA | 2664 | qua-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
CG6433-PB | 2667 | qua-RB | 30..812 | 43..825 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qua-RA | 3266 | CG6433-RA | 448..1256 | 17..825 | 4045 | 100 | Plus |
qua-RB | 3306 | CG6433-RB | 514..1296 | 43..825 | 3915 | 100 | Plus |
qua-RC | 3318 | CG6433-RC | 514..1308 | 43..825 | 3785 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17489001..17489369 | 825..457 | 1845 | 100 | Minus |
2L | 23513712 | 2L | 17489693..17489904 | 253..42 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 17489431..17489633 | 456..254 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:19:57 has no hits.
BO12483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:11 Download gff for
BO12483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:27 Download gff for
BO12483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6433-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:35 Download gff for
BO12483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-RA | 441..1255 | 9..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:26 Download gff for
BO12483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-RA | 441..1255 | 9..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:26 Download gff for
BO12483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17489002..17489369 | 457..824 | 100 | <- | Minus |
2L | 17489431..17489633 | 254..456 | 100 | <- | Minus |
2L | 17489693..17489902 | 44..253 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:35 Download gff for
BO12483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17489002..17489369 | 457..824 | 100 | <- | Minus |
arm_2L | 17489431..17489633 | 254..456 | 100 | <- | Minus |
arm_2L | 17489693..17489902 | 44..253 | 100 | <- | Minus |
BO12483.complete Sequence
2695 bp assembled on 2008-08-14
GenBank Submission: FJ632452
> BO12483.complete
GAAGTTATCAGTCGACATGCCGCCGTTTAATTTCATCAAGCAGGAGATCC
GTCCCAACACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAGGTG
GCTAAACATGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCGCCT
GGAGGCGGTACAAAGATCACATTATGGCACCTTCTACGATAGCTGCGCCT
ACATTATCTATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAAACC
ATCACACGCGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCACTA
CTGGCTGGGCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTCATA
AAATCCAGGAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTACCGA
GAGACCCAGAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAAGGG
TTACGATGTTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCACGAC
TTTTTCAATTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCCACC
ATCGATTGGTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAACGGA
TAATCTTACCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAACGAC
GAAGTGCCCTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATCACT
ATAGTCGATGATGGATATGAGCAGGCCATGTCCCAGGAGCACAAGGAGCT
GTGGAACACCATGCTTCCGCTAAAGAAACGCATGGTCTGTCAGGCCAGTC
AGTTGGTCAGCGAATACGCCGACTACAATAGCAATAAGTTCCGCATCTAT
AAGTGCAATCAACGGGGAAGGCTGCACCTGGATCAATTGGATGTGGGCAT
GCCAGCAAAAGATGATCTAAGCGATGCCCATGGAGTCTATTTACTGGACA
ACTACGGCCAGAGTATTTGGTTGTGGGTAGGAGGCCAGGCACCGCAGGCA
GATGCCCTTTCTGCCATGGGAAATGGGAGAGCTTTTGTTAAAAAGAAGAA
ATATCCGGATAATACGTTGGTGGTGCGTGTCCTCGAGGGTCACGAGCCCG
TGGAGTTTAAGCGTCTCTTTGCCAACTGGTTAAATGTTTGGCAGGAGAAC
ACCAGGGGACATAAGCCAGTGTCCACAAAGTTTGGAAAGCTAGATGCCCA
TTCCCTATGCGAACGCCCTAAAATGGCTGCAGATACACAGCTCGTTGATG
ATGGCAGGGGTGAAAGAGTAATCTATCGTGTCTTCGGAGATCAGGTGCAA
GAGGTGCCCATCTCAAAAACGGTTGTGTTCACCACCAATGCCAGTTTCGT
GGTCAAGTACAGCGTGCAGTGCGCCACCGTTGTTCCCGCAGATTTGGCCT
CCGTTGGCATTAAAACAATCATCTACCAGTGGAATGGTTCGGAGGCCTCT
GTAGAGTCCATTTCCCGGGCGGACAAGTTCGCCAAGGCCAGTTTTGATGG
GCTCAAGGAGCCTGGAATGTTTGTACAGCTCTATGAGTTCGATGAACCAC
CGCACTTCCTTCAGATCTTCGAGGGAAAACTTATTATCAGGCGCGGTCAG
CGTACCGAGATGCCTTACAATGGTAACTCCAATGCCTTGCTGGACACCTT
TCTGCTGAAAGTTTATGGCGATGCTAGCTACAATGCCAAGGCTGTGGAGG
AGACACATCTGTCATCGATCAGCTCCAAAGATTGCTATGTGATCAAAACG
AATCATGTTTGGGTGTGGTGCGGGCAAAGTAGCACGGGAGATGCCCGCGA
GATGGCCAAAGCAGTGGGAGCTCTGATGGGGGAAAACTCTCTGGTCCTCG
AAGGCAAGGAAAGTAAGGAGTTCTGGCAATCGGTGGCCATGTACTTCAAC
CAAACTCTAGTGATCAACGGAAATGGGAACTCATGTTCCAGCAGCACCAG
TAGCAGCAGTGGCGCCGGCAGCATGTGCAATGGTAGCTCCAATGGTGGTA
ACATTTCACCCACTCTCAGCAATAATTGTTACCTAAACACCAGTGTTCCG
AGTAAACCGAGACCTCCTGTACAACTATTTCTGGTATGGTGGCAACAGAG
TTCGCTGAGATACGAGGAGATTCTCGGATTCGATCAGCAGGATCTCAGTT
CGGATTGCACCTATATTCTGGACACTGGGAGCCTCACCTACGTCTGGCTG
GGATCGCAGGCCCCAAACCAGGAACGCTACACAGCGATTGCCCAAAGTTA
TGTCCAAAATGCTCCATTCGGACGCAGATCAGCGACAGCGTTGGCCGTGG
TCAGGCAGTTTCAGGAGCCAAATGTTTTCAAGGGATTCTTCGAGTCCTGG
CAAAACGATTACGGCAAGAACTTCCATTCCTACGAGAAAATGCGCAAGGA
TCTGGGAAATAAAGTGACCAGCAATTGTTGCTTCGCAAGCGAAGGATCGG
CTCTAATCCTGAACAACAGACAGAAGGACTTTGATGGTCACAAAAAGTAT
CCATTAACCGTGCTCATCCAGGAAATGGATATGCTGCCACCAGATATTAA
TCCGCTCAAGAGGGAGGTTCACCTAACACACGATGATTTTGTGTCAGTGT
TTAATATGTCCTTTTATGAATTTGACGAGCTGCCGAAATGGAAGAAAATG
GAGCTGAAAAAGCAATTCAAGCTTTTTGCAAGCTTTCTAGACCAT
BO12483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qua-RA | 2664 | CG6433-PA | 1..2661 | 17..2677 | 13305 | 100 | Plus |
qua-RB | 2667 | CG6433-PB | 30..2664 | 43..2677 | 13175 | 100 | Plus |
qua-RC | 2679 | CG6433-PC | 30..2676 | 43..2677 | 13020 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qua-RA | 3266 | CG6433-RA | 448..3108 | 17..2677 | 13305 | 100 | Plus |
qua-RB | 3306 | CG6433-RB | 514..3148 | 43..2677 | 13175 | 100 | Plus |
qua-RC | 3318 | CG6433-RC | 514..3160 | 43..2677 | 13020 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17487402..17488403 | 2368..1367 | 5010 | 100 | Minus |
2L | 23513712 | 2L | 17488457..17489369 | 1369..457 | 4565 | 100 | Minus |
2L | 23513712 | 2L | 17489693..17489904 | 253..42 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 17489431..17489633 | 456..254 | 1015 | 100 | Minus |
2L | 23513712 | 2L | 17487138..17487339 | 2568..2367 | 1010 | 100 | Minus |
2L | 23513712 | 2L | 17486964..17487076 | 2677..2565 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:41:02 has no hits.
BO12483.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:54 Download gff for
BO12483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-RA | 443..3109 | 17..2685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:21 Download gff for
BO12483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-RA | 448..3108 | 17..2679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:21 Download gff for
BO12483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-RA | 443..3103 | 17..2679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:43 Download gff for
BO12483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qua-RA | 448..3108 | 17..2679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:43 Download gff for
BO12483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17486962..17487074 | 2567..2679 | 98 | <- | Minus |
2L | 17487140..17487337 | 2369..2566 | 100 | <- | Minus |
2L | 17487402..17488400 | 1370..2368 | 100 | <- | Minus |
2L | 17488457..17489369 | 457..1369 | 100 | <- | Minus |
2L | 17489431..17489633 | 254..456 | 100 | <- | Minus |
2L | 17489693..17489902 | 44..253 | 100 | <- | Minus |
2L | 17496735..17496761 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:21 Download gff for
BO12483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17486962..17487074 | 2567..2679 | 98 | <- | Minus |
arm_2L | 17487140..17487337 | 2369..2566 | 100 | <- | Minus |
arm_2L | 17487402..17488400 | 1370..2368 | 100 | <- | Minus |
arm_2L | 17488457..17489369 | 457..1369 | 100 | <- | Minus |
arm_2L | 17489431..17489633 | 254..456 | 100 | <- | Minus |
arm_2L | 17489693..17489902 | 44..253 | 100 | <- | Minus |
arm_2L | 17496735..17496761 | 17..43 | 100 | | Minus |
BO12483.pep Sequence
Translation from 16 to 2695
> BO12483.pep
MPPFNFIKQEIRPNTIPDLKVDATFRKVAKHAITFAIWKIDEDRLEAVQR
SHYGTFYDSCAYIIYAASLSGHYANHETITREQKPNVSLERYIHYWLGKN
VSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFKKGYDVRS
GALISAPQRPRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTYV
WIGRSSSGIERRSALDWVQKHCSGSPITIVDDGYEQAMSQEHKELWNTML
PLKKRMVCQASQLVSEYADYNSNKFRIYKCNQRGRLHLDQLDVGMPAKDD
LSDAHGVYLLDNYGQSIWLWVGGQAPQADALSAMGNGRAFVKKKKYPDNT
LVVRVLEGHEPVEFKRLFANWLNVWQENTRGHKPVSTKFGKLDAHSLCER
PKMAADTQLVDDGRGERVIYRVFGDQVQEVPISKTVVFTTNASFVVKYSV
QCATVVPADLASVGIKTIIYQWNGSEASVESISRADKFAKASFDGLKEPG
MFVQLYEFDEPPHFLQIFEGKLIIRRGQRTEMPYNGNSNALLDTFLLKVY
GDASYNAKAVEETHLSSISSKDCYVIKTNHVWVWCGQSSTGDAREMAKAV
GALMGENSLVLEGKESKEFWQSVAMYFNQTLVINGNGNSCSSSTSSSSGA
GSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQQSSLRYE
EILGFDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTAIAQSYVQNAP
FGRRSATALAVVRQFQEPNVFKGFFESWQNDYGKNFHSYEKMRKDLGNKV
TSNCCFASEGSALILNNRQKDFDGHKKYPLTVLIQEMDMLPPDINPLKRE
VHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKLFASFLDH
BO12483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qua-PA | 887 | CG6433-PA | 1..887 | 1..887 | 4702 | 100 | Plus |
qua-PB | 888 | CG6433-PB | 11..888 | 10..887 | 4651 | 100 | Plus |
qua-PC | 892 | CG6433-PC | 11..892 | 10..887 | 4632 | 99.4 | Plus |
Gel-PL | 740 | CG1106-PL | 16..740 | 37..800 | 465 | 24.8 | Plus |
Gel-PA | 740 | CG1106-PA | 16..740 | 37..800 | 465 | 24.8 | Plus |