Clone BO12483 Report

Search the DGRC for BO12483

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptqua-RA
Protein status:BO12483.pep: Imported from assembly
Sequenced Size:2695

Clone Sequence Records

BO12483.3prime Sequence

867 bp (839 high quality bases) assembled on 2006-05-08

> BO12483.3prime
CCGTAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTGCAAACCGTTTGA
GTTGCTTTTTCAGCTCCATTTTCTTCCATTTCGGCAGCTCGTCAAATTCA
TAAAAGGACATATTAAACACTGACACAAAATCATCGTGTGTTAGGTGAAC
CTCCCTCTTGAGCGGATTAATATCTGGTGGCAGCATATCCATTTCCTGGA
TGAGCACGGTTAATGGATACTTTTTGTGACCATCAAAGTCCTTCTGTCTG
TTGTTCAGGATTAGAGCCGATCCTTCGCTTGCGAAGCAACAATTGCTGGT
CACTTTATTTCCCAGATCCTTGCGCATTTTCTCGTAGGAATGGAAGTTCT
TGCCGTAATCGTTTTGCCAGGACTCGAAGAATCCCTTGAAAACATTTGGC
TCCTGAAACTGCCTGACCACGGCCAACGCTGTCGCTGATCTGCGTCCGAA
TGGAGCATTTTGGACATAACTTTGGGCAATCGCTGTGTAGCGTTCCTGGT
TTGGGGCCTGCGATCCCAGCCAGACGTAGGTGAGGCTCCCAGTGTCCAGA
ATATAGGTGCAATCCGAACTGAGATCCTGCTGATCGAATCCGAGAATCTC
CTCGTATCTCAGCGAACTCTGTTGCCACCATACCAGAAATAGTTGTACAG
GAGGTCTCGGTTTACTCGGAACACTGGTGTTTAGGTAACAATTATTGCTG
AGAGTGGGTGAAATGTTACCACCATTGGAGCTACCATTGCACATGCTGCC
GGCGCCACTGCTGCTACTGGTGCTGCTGGAACATGAGTTCCCATTTCCGT
TGATCACTAGAGTTTGGTTGAAGTACATGGCCACCGATTGCCAGAACTCC
TTACTTTCCTTTGCTTC

BO12483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6433-PA 2664 qua-RA 1840..2649 861..52 4050 100 Minus
CG6433-PB 2667 qua-RB 1843..2652 861..52 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
qua-RC 3318 CG6433-RC 2339..3153 861..47 4060 99.9 Minus
qua-RB 3306 CG6433-RB 2327..3141 861..47 4060 99.9 Minus
qua-RA 3266 CG6433-RA 2287..3101 861..47 4060 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17487402..17487914 349..861 2565 100 Plus
2L 23513712 2L 17487138..17487339 149..350 1010 100 Plus
2L 23513712 2L 17486971..17487076 47..152 515 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 18:55:39 has no hits.

BO12483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:10 Download gff for BO12483.3prime
Subject Subject Range Query Range Percent Splice Strand
qua-PA 1834..2659 40..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:26 Download gff for BO12483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6433-PB 1837..2662 40..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:30 Download gff for BO12483.3prime
Subject Subject Range Query Range Percent Splice Strand
qua-RA 2281..3106 40..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:07 Download gff for BO12483.3prime
Subject Subject Range Query Range Percent Splice Strand
qua-RA 2281..3106 40..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:07 Download gff for BO12483.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17486964..17487074 40..150 96 <- Plus
2L 17487140..17487337 151..348 100 <- Plus
2L 17487402..17487920 349..867 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:30 Download gff for BO12483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17486964..17487074 40..150 96 <- Plus
arm_2L 17487140..17487337 151..348 100 <- Plus
arm_2L 17487402..17487920 349..867 99   Plus

BO12483.5prime Sequence

825 bp (790 high quality bases) assembled on 2006-05-08

> BO12483.5prime
GAAGTTATCACTCTACATGCCGCCGTTTAATTTCATCAAGCAGGAGATCC
GTCCCAACACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAGGTG
GCTAAACATGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCGCCT
GGAGGCGGTACAAAGATCACATTATGGCACCTTCTACGATAGCTGCGCCT
ACATTATCTATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAAACC
ATCACACGCGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCACTA
CTGGCTGGGCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTCATA
AAATCCAGGAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTACCGA
GAGACCCAGAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAAGGG
TTACGATGTTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCACGAC
TTTTTCAATTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCCACC
ATCGATTGGTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAACGGA
TAATCTTACCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAACGAC
GAAGTGCCCTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATCACT
ATAGTCGATGATGGATATGAGCAGGCCATGTCCCAGGAGCACAAGGAGCT
GTGGAACACCATGCTTCCGCTAAAGAAACGCATGGTCTGTCAGGCCAGTC
AGTTGGTCAGCGAATACGCCGACTA

BO12483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6433-PA 2664 qua-RA 1..809 17..825 4045 100 Plus
CG6433-PB 2667 qua-RB 30..812 43..825 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
qua-RA 3266 CG6433-RA 448..1256 17..825 4045 100 Plus
qua-RB 3306 CG6433-RB 514..1296 43..825 3915 100 Plus
qua-RC 3318 CG6433-RC 514..1308 43..825 3785 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17489001..17489369 825..457 1845 100 Minus
2L 23513712 2L 17489693..17489904 253..42 1060 100 Minus
2L 23513712 2L 17489431..17489633 456..254 1015 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:19:57 has no hits.

BO12483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:11 Download gff for BO12483.5prime
Subject Subject Range Query Range Percent Splice Strand
qua-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:27 Download gff for BO12483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6433-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:35 Download gff for BO12483.5prime
Subject Subject Range Query Range Percent Splice Strand
qua-RA 441..1255 9..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:26 Download gff for BO12483.5prime
Subject Subject Range Query Range Percent Splice Strand
qua-RA 441..1255 9..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:26 Download gff for BO12483.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17489002..17489369 457..824 100 <- Minus
2L 17489431..17489633 254..456 100 <- Minus
2L 17489693..17489902 44..253 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:35 Download gff for BO12483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17489002..17489369 457..824 100 <- Minus
arm_2L 17489431..17489633 254..456 100 <- Minus
arm_2L 17489693..17489902 44..253 100 <- Minus

BO12483.complete Sequence

2695 bp assembled on 2008-08-14

GenBank Submission: FJ632452

> BO12483.complete
GAAGTTATCAGTCGACATGCCGCCGTTTAATTTCATCAAGCAGGAGATCC
GTCCCAACACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAGGTG
GCTAAACATGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCGCCT
GGAGGCGGTACAAAGATCACATTATGGCACCTTCTACGATAGCTGCGCCT
ACATTATCTATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAAACC
ATCACACGCGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCACTA
CTGGCTGGGCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTCATA
AAATCCAGGAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTACCGA
GAGACCCAGAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAAGGG
TTACGATGTTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCACGAC
TTTTTCAATTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCCACC
ATCGATTGGTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAACGGA
TAATCTTACCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAACGAC
GAAGTGCCCTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATCACT
ATAGTCGATGATGGATATGAGCAGGCCATGTCCCAGGAGCACAAGGAGCT
GTGGAACACCATGCTTCCGCTAAAGAAACGCATGGTCTGTCAGGCCAGTC
AGTTGGTCAGCGAATACGCCGACTACAATAGCAATAAGTTCCGCATCTAT
AAGTGCAATCAACGGGGAAGGCTGCACCTGGATCAATTGGATGTGGGCAT
GCCAGCAAAAGATGATCTAAGCGATGCCCATGGAGTCTATTTACTGGACA
ACTACGGCCAGAGTATTTGGTTGTGGGTAGGAGGCCAGGCACCGCAGGCA
GATGCCCTTTCTGCCATGGGAAATGGGAGAGCTTTTGTTAAAAAGAAGAA
ATATCCGGATAATACGTTGGTGGTGCGTGTCCTCGAGGGTCACGAGCCCG
TGGAGTTTAAGCGTCTCTTTGCCAACTGGTTAAATGTTTGGCAGGAGAAC
ACCAGGGGACATAAGCCAGTGTCCACAAAGTTTGGAAAGCTAGATGCCCA
TTCCCTATGCGAACGCCCTAAAATGGCTGCAGATACACAGCTCGTTGATG
ATGGCAGGGGTGAAAGAGTAATCTATCGTGTCTTCGGAGATCAGGTGCAA
GAGGTGCCCATCTCAAAAACGGTTGTGTTCACCACCAATGCCAGTTTCGT
GGTCAAGTACAGCGTGCAGTGCGCCACCGTTGTTCCCGCAGATTTGGCCT
CCGTTGGCATTAAAACAATCATCTACCAGTGGAATGGTTCGGAGGCCTCT
GTAGAGTCCATTTCCCGGGCGGACAAGTTCGCCAAGGCCAGTTTTGATGG
GCTCAAGGAGCCTGGAATGTTTGTACAGCTCTATGAGTTCGATGAACCAC
CGCACTTCCTTCAGATCTTCGAGGGAAAACTTATTATCAGGCGCGGTCAG
CGTACCGAGATGCCTTACAATGGTAACTCCAATGCCTTGCTGGACACCTT
TCTGCTGAAAGTTTATGGCGATGCTAGCTACAATGCCAAGGCTGTGGAGG
AGACACATCTGTCATCGATCAGCTCCAAAGATTGCTATGTGATCAAAACG
AATCATGTTTGGGTGTGGTGCGGGCAAAGTAGCACGGGAGATGCCCGCGA
GATGGCCAAAGCAGTGGGAGCTCTGATGGGGGAAAACTCTCTGGTCCTCG
AAGGCAAGGAAAGTAAGGAGTTCTGGCAATCGGTGGCCATGTACTTCAAC
CAAACTCTAGTGATCAACGGAAATGGGAACTCATGTTCCAGCAGCACCAG
TAGCAGCAGTGGCGCCGGCAGCATGTGCAATGGTAGCTCCAATGGTGGTA
ACATTTCACCCACTCTCAGCAATAATTGTTACCTAAACACCAGTGTTCCG
AGTAAACCGAGACCTCCTGTACAACTATTTCTGGTATGGTGGCAACAGAG
TTCGCTGAGATACGAGGAGATTCTCGGATTCGATCAGCAGGATCTCAGTT
CGGATTGCACCTATATTCTGGACACTGGGAGCCTCACCTACGTCTGGCTG
GGATCGCAGGCCCCAAACCAGGAACGCTACACAGCGATTGCCCAAAGTTA
TGTCCAAAATGCTCCATTCGGACGCAGATCAGCGACAGCGTTGGCCGTGG
TCAGGCAGTTTCAGGAGCCAAATGTTTTCAAGGGATTCTTCGAGTCCTGG
CAAAACGATTACGGCAAGAACTTCCATTCCTACGAGAAAATGCGCAAGGA
TCTGGGAAATAAAGTGACCAGCAATTGTTGCTTCGCAAGCGAAGGATCGG
CTCTAATCCTGAACAACAGACAGAAGGACTTTGATGGTCACAAAAAGTAT
CCATTAACCGTGCTCATCCAGGAAATGGATATGCTGCCACCAGATATTAA
TCCGCTCAAGAGGGAGGTTCACCTAACACACGATGATTTTGTGTCAGTGT
TTAATATGTCCTTTTATGAATTTGACGAGCTGCCGAAATGGAAGAAAATG
GAGCTGAAAAAGCAATTCAAGCTTTTTGCAAGCTTTCTAGACCAT

BO12483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
qua-RA 2664 CG6433-PA 1..2661 17..2677 13305 100 Plus
qua-RB 2667 CG6433-PB 30..2664 43..2677 13175 100 Plus
qua-RC 2679 CG6433-PC 30..2676 43..2677 13020 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
qua-RA 3266 CG6433-RA 448..3108 17..2677 13305 100 Plus
qua-RB 3306 CG6433-RB 514..3148 43..2677 13175 100 Plus
qua-RC 3318 CG6433-RC 514..3160 43..2677 13020 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17487402..17488403 2368..1367 5010 100 Minus
2L 23513712 2L 17488457..17489369 1369..457 4565 100 Minus
2L 23513712 2L 17489693..17489904 253..42 1060 100 Minus
2L 23513712 2L 17489431..17489633 456..254 1015 100 Minus
2L 23513712 2L 17487138..17487339 2568..2367 1010 100 Minus
2L 23513712 2L 17486964..17487076 2677..2565 565 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:41:02 has no hits.

BO12483.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:54 Download gff for BO12483.complete
Subject Subject Range Query Range Percent Splice Strand
qua-RA 443..3109 17..2685 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:21 Download gff for BO12483.complete
Subject Subject Range Query Range Percent Splice Strand
qua-RA 448..3108 17..2679 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:21 Download gff for BO12483.complete
Subject Subject Range Query Range Percent Splice Strand
qua-RA 443..3103 17..2679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:43 Download gff for BO12483.complete
Subject Subject Range Query Range Percent Splice Strand
qua-RA 448..3108 17..2679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:43 Download gff for BO12483.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17486962..17487074 2567..2679 98 <- Minus
2L 17487140..17487337 2369..2566 100 <- Minus
2L 17487402..17488400 1370..2368 100 <- Minus
2L 17488457..17489369 457..1369 100 <- Minus
2L 17489431..17489633 254..456 100 <- Minus
2L 17489693..17489902 44..253 100 <- Minus
2L 17496735..17496761 17..43 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:21 Download gff for BO12483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17486962..17487074 2567..2679 98 <- Minus
arm_2L 17487140..17487337 2369..2566 100 <- Minus
arm_2L 17487402..17488400 1370..2368 100 <- Minus
arm_2L 17488457..17489369 457..1369 100 <- Minus
arm_2L 17489431..17489633 254..456 100 <- Minus
arm_2L 17489693..17489902 44..253 100 <- Minus
arm_2L 17496735..17496761 17..43 100   Minus

BO12483.pep Sequence

Translation from 16 to 2695

> BO12483.pep
MPPFNFIKQEIRPNTIPDLKVDATFRKVAKHAITFAIWKIDEDRLEAVQR
SHYGTFYDSCAYIIYAASLSGHYANHETITREQKPNVSLERYIHYWLGKN
VSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFKKGYDVRS
GALISAPQRPRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTYV
WIGRSSSGIERRSALDWVQKHCSGSPITIVDDGYEQAMSQEHKELWNTML
PLKKRMVCQASQLVSEYADYNSNKFRIYKCNQRGRLHLDQLDVGMPAKDD
LSDAHGVYLLDNYGQSIWLWVGGQAPQADALSAMGNGRAFVKKKKYPDNT
LVVRVLEGHEPVEFKRLFANWLNVWQENTRGHKPVSTKFGKLDAHSLCER
PKMAADTQLVDDGRGERVIYRVFGDQVQEVPISKTVVFTTNASFVVKYSV
QCATVVPADLASVGIKTIIYQWNGSEASVESISRADKFAKASFDGLKEPG
MFVQLYEFDEPPHFLQIFEGKLIIRRGQRTEMPYNGNSNALLDTFLLKVY
GDASYNAKAVEETHLSSISSKDCYVIKTNHVWVWCGQSSTGDAREMAKAV
GALMGENSLVLEGKESKEFWQSVAMYFNQTLVINGNGNSCSSSTSSSSGA
GSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQQSSLRYE
EILGFDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTAIAQSYVQNAP
FGRRSATALAVVRQFQEPNVFKGFFESWQNDYGKNFHSYEKMRKDLGNKV
TSNCCFASEGSALILNNRQKDFDGHKKYPLTVLIQEMDMLPPDINPLKRE
VHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKLFASFLDH

BO12483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
qua-PA 887 CG6433-PA 1..887 1..887 4702 100 Plus
qua-PB 888 CG6433-PB 11..888 10..887 4651 100 Plus
qua-PC 892 CG6433-PC 11..892 10..887 4632 99.4 Plus
Gel-PL 740 CG1106-PL 16..740 37..800 465 24.8 Plus
Gel-PA 740 CG1106-PA 16..740 37..800 465 24.8 Plus