Clone Sequence Records
BO12484.3prime Sequence
891 bp (765 high quality bases) assembled on 2006-05-08
> BO12484.3prime
ATGGTCTAGAAAGCTTGCTTTAACCCACTCGCGTACCAGTTCGGCAATAC
GTTCTTTGGAAGCTCTCATTTCAGCAGTGTCACTCGAGCTGATCGAATTG
AAGTCCTTGCAATGGGCATGCTCTGGAATAATAGTGGCCTGAGTTTCGTC
CTGAATACCCATCGCCCTCCAGGGATCCAATTGCCCATGGGTGAGGTAGA
CGTTTTCCACATTAGGAAATAATCCACCAAAGAACTGATTGGTGATGCTC
ACTTGGTTGCTAATGAACTCGTTGCTGTACTCTGAGCCATATAAATCGGC
ACACATGGTGGTATAATAGGTAACAGGGAATTTGGTACCAAATGGTTGGG
CACTAGAACCAGAGGTCTGATACCAACCATACTCATTGCAGGTCTGGAAG
ATCCACTGACGCATAATGTTGCCATTGTAATTAGTGTCCAGAAGTAATGC
AGTAATTGCATCATAGCTAAGGTCGTAGCACTTGCCACCGCTCTCCTCGA
ATACATCCAACAAATATCCAGCAACGCCAATAAGATCATTCGAACCGGCC
ATTATCTTCTCGCAAACACCCTCAATTTGACCAGCATTGTGAGTCTGGAC
CACGCCCGCAAAAATATCGGAAATCTCGCTGAACAAAGTCCAAACATCCA
GATCGCTGTAGACATCAAAGGGTTCGCACAACTTGAGCAGGGCCTTGACC
TCTGCACCTCGTTTGGTGGCTATCATGGTCTCCATCTCGGCAATGCCGTT
TTCAATTCGCTTGTAGCAGGCAGATCCACCCATTTGTTCGATGGATTGGC
CAGTGATTTCTTTGTACTCAACAAAGTTGACCTTGGCAAGGAGCGGAGCA
CTGGAAGCCCAACTCCAGCCACCAGATCGGGATAGAGCTTC
BO12484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-PA | 1422 | CG3734-RA | 575..1419 | 863..19 | 4225 | 100 | Minus |
CG3734-PA | 1422 | CG3734-RA | 546..574 | 891..863 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-RB | 1536 | CG3734-RB | 596..1469 | 891..19 | 4345 | 99.9 | Minus |
CG3734-RA | 1619 | CG3734-RA | 679..1552 | 891..19 | 4345 | 99.9 | Minus |
CG18493-RA | 1566 | CG18493-RA | 1078..1150 | 396..324 | 185 | 83.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19389343..19389633 | 413..123 | 1455 | 100 | Minus |
3R | 32079331 | 3R | 19388811..19389043 | 819..587 | 1165 | 100 | Minus |
3R | 32079331 | 3R | 19389104..19389276 | 586..414 | 865 | 100 | Minus |
3R | 32079331 | 3R | 19389694..19389799 | 124..19 | 530 | 100 | Minus |
3R | 32079331 | 3R | 19388677..19388750 | 891..819 | 320 | 98.6 | Minus |
3R | 32079331 | 3R | 19391644..19391716 | 396..324 | 185 | 83.6 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:47:30 has no hits.
BO12484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:12 Download gff for
BO12484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-PA | 546..1422 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:29 Download gff for
BO12484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-PA | 546..1422 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:29 Download gff for
BO12484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 679..1555 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:32 Download gff for
BO12484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 679..1555 | 15..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:32 Download gff for
BO12484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19388677..19388750 | 819..891 | 98 | -> | Minus |
3R | 19388812..19389043 | 587..818 | 100 | -> | Minus |
3R | 19389104..19389276 | 414..586 | 100 | -> | Minus |
3R | 19389343..19389633 | 123..413 | 100 | -> | Minus |
3R | 19389696..19389802 | 15..122 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:29 Download gff for
BO12484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15214399..15214472 | 819..891 | 98 | -> | Minus |
arm_3R | 15214534..15214765 | 587..818 | 100 | -> | Minus |
arm_3R | 15214826..15214998 | 414..586 | 100 | -> | Minus |
arm_3R | 15215065..15215355 | 123..413 | 100 | -> | Minus |
arm_3R | 15215418..15215524 | 15..122 | 98 | | Minus |
BO12484.5prime Sequence
845 bp (826 high quality bases) assembled on 2006-05-08
> BO12484.5prime
GAAGTTATCACTCGACATGAAGCTTTGGCTAGGCATTTCTTTGGCTCTGT
TGGCCCTGGGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGG
ATCCACGAGGAGCCACCACTGCCAACCACTCAGAATCGAGCTGATGTAGT
TCAAACCCTTTGGATTGAACAGAAGCTGGATCACTTCGACCCGGAAGAAA
CGCGCACATGGCAAATGCGCTATATGCTCAACGATGCACTTTACCAGTCT
GGAGCACCACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCGGG
CAGAATAACCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTC
TTTTGGCCTACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCT
GATCTATCGAACGAAAACATAAAATACCTAAATGTTAATCAGTCCCTGGC
CGATCTGGCTTATTTCATAAACACCATCAAGCAAAACCACGAAGGTTTGT
CCGATTCCAAGGTCATTATTGTTGGAGGTTCCTACTCTGCCACTATGGTC
ACCTGGTTCAAGAAGCTCTATCCCGATCTGGTGGCTGGAGGTTGGGCTTC
CAGTGCTCCGCTCCTTGCCAAGGTCAACTTTGTTGAGTACAAAGAAATCA
CTGGCCAATCCATCGAACAAATGGGTGGATCTGCCTGCTACAAGCGAATT
GAAAACGGCATTGCCGAGATGGAGACCATGATAGCCACCAAACGAGGTGC
AGAGGTCAAGGCCCTGCTCAAGTTGTGCGAACCCTTTGATGTCTACAGCG
ATCTGGATGTTTGGACTTTGTTCAGCGAGATTTCCGATATTTTTG
BO12484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-PA | 1422 | CG3734-RA | 1..829 | 17..845 | 4120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-RB | 1536 | CG3734-RB | 44..879 | 11..845 | 4140 | 99.8 | Plus |
CG3734-RA | 1619 | CG3734-RA | 127..962 | 11..845 | 4140 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19388515..19388750 | 400..635 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 19388811..19389021 | 635..845 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 19387994..19388194 | 17..217 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 19388272..19388454 | 217..399 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:24:26 has no hits.
BO12484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:13 Download gff for
BO12484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:30 Download gff for
BO12484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:48:39 Download gff for
BO12484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 121..962 | 5..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:04 Download gff for
BO12484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 121..962 | 5..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:04 Download gff for
BO12484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19388812..19389021 | 636..845 | 100 | | Plus |
3R | 19387981..19388194 | 5..217 | 98 | -> | Plus |
3R | 19388273..19388454 | 218..399 | 100 | -> | Plus |
3R | 19388515..19388750 | 400..635 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:48:39 Download gff for
BO12484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15213703..15213916 | 5..217 | 98 | -> | Plus |
arm_3R | 15213995..15214176 | 218..399 | 100 | -> | Plus |
arm_3R | 15214237..15214472 | 400..635 | 100 | -> | Plus |
arm_3R | 15214534..15214743 | 636..845 | 100 | | Plus |
BO12484.complete Sequence
1453 bp assembled on 2008-08-14
GenBank Submission: FJ632453
> BO12484.complete
GAAGTTATCACTCGACATGAAGCTTTGGCTAGGCATTTCTTTGGCTCTGT
TGGCCCTGGGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGG
ATCCACGAGGAGCCACCACTGCCAACCACTCAGAATCGAGCTGATGTAGT
TCAAACCCTTTGGATTGAACAGAAGCTGGATCACTTCGACCCGGAAGAAA
CGCGCACATGGCAAATGCGCTATATGCTCAACGATGCACTTTACCAGTCT
GGAGCACCACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCGGG
CAGAATAACCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTC
TTTTGGCCTACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCT
GATCTATCGAACGAAAACATAAAATACCTAAATGTTAATCAGTCCCTGGC
CGATCTGGCTTATTTCATAAACACCATCAAGCAAAACCACGAAGGTTTGT
CCGATTCCAAGGTCATTATTGTTGGAGGTTCCTACTCTGCCACTATGGTC
ACCTGGTTCAAGAAGCTCTATCCCGATCTGGTGGCTGGAGGTTGGGCTTC
CAGTGCTCCGCTCCTTGCCAAGGTCAACTTTGTTGAGTACAAAGAAATCA
CTGGCCAATCCATCGAACAAATGGGTGGATCTGCCTGCTACAAGCGAATT
GAAAACGGCATTGCCGAGATGGAGACCATGATAGCCACCAAACGAGGTGC
AGAGGTCAAGGCCCTGCTCAAGTTGTGCGAACCCTTTGATGTCTACAGCG
ATCTGGATGTTTGGACTTTGTTCAGCGAGATTTCCGATATTTTTGCGGGC
GTGGTCCAGACTCACAATGCTGGTCAAATTGAGGGTGTTTGCGAGAAGAT
AATGGCCGGTTCGAATGATCTTATTGGCGTTGCTGGATATTTGTTGGATG
TATTCGAGGAGAGCGGTGGCAAGTGCTACGACCTTAGCTATGATGCAATT
ACTGCATTACTTCTGGACACTAATTACAATGGCAACATTATGCGTCAGTG
GATCTTCCAGACCTGCAATGAGTATGGTTGGTATCAGACCTCTGGTTCTA
GTGCCCAACCATTTGGTACCAAATTCCCTGTTACCTATTATACCACCATG
TGTGCCGATTTATATGGCTCAGAGTACAGCAACGAGTTCATTAGCAACCA
AGTGAGCATCACCAATCAGTTCTTTGGTGGATTATTTCCTAATGTGGAAA
ACGTCTACCTCACCCATGGGCAATTGGATCCCTGGAGGGCGATGGGTATT
CAGGACGAAACTCAGGCCACTATTATTCCAGAGCATGCCCATTGCAAGGA
CTTCAATTCGATCAGCTCGAGTGACACTGCTGAAATGAGAGCTTCCAAAG
AACGTATTGCCGAACTGGTACGCGAGTGGGTTAAAGCAAGCTTTCTAGAC
CAT
BO12484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-RB | 1422 | CG3734-PB | 1..1419 | 17..1435 | 7080 | 99.9 | Plus |
CG3734-RA | 1422 | CG3734-PA | 1..1419 | 17..1435 | 7080 | 99.9 | Plus |
CG18493-RA | 1443 | CG18493-PA | 1063..1135 | 1058..1130 | 185 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-RB | 1536 | CG3734-RB | 51..1469 | 17..1435 | 7080 | 99.9 | Plus |
CG3734-RA | 1619 | CG3734-RA | 134..1552 | 17..1435 | 7080 | 99.9 | Plus |
CG18493-RA | 1566 | CG18493-RA | 1078..1150 | 1058..1130 | 185 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19389343..19389633 | 1041..1331 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 19388515..19388750 | 400..635 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 19388811..19389043 | 635..867 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 19387994..19388194 | 17..217 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 19388272..19388454 | 217..399 | 915 | 100 | Plus |
3R | 32079331 | 3R | 19389104..19389276 | 868..1040 | 865 | 100 | Plus |
3R | 32079331 | 3R | 19389694..19389799 | 1330..1435 | 530 | 100 | Plus |
3R | 32079331 | 3R | 19391644..19391716 | 1058..1130 | 185 | 83.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:44 has no hits.
BO12484.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:18 Download gff for
BO12484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 123..1557 | 5..1439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:36 Download gff for
BO12484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 134..1552 | 17..1437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:02 Download gff for
BO12484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 136..1554 | 17..1437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:39 Download gff for
BO12484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 134..1552 | 17..1437 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:39 Download gff for
BO12484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19389343..19389633 | 1041..1331 | 100 | -> | Plus |
3R | 19389696..19389799 | 1332..1437 | 98 | | Plus |
3R | 19387994..19388194 | 17..217 | 99 | -> | Plus |
3R | 19388273..19388454 | 218..399 | 100 | -> | Plus |
3R | 19388515..19388750 | 400..635 | 100 | -> | Plus |
3R | 19388812..19389043 | 636..867 | 100 | -> | Plus |
3R | 19389104..19389276 | 868..1040 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:36 Download gff for
BO12484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15213716..15213916 | 17..217 | 99 | -> | Plus |
arm_3R | 15213995..15214176 | 218..399 | 100 | -> | Plus |
arm_3R | 15214237..15214472 | 400..635 | 100 | -> | Plus |
arm_3R | 15214534..15214765 | 636..867 | 100 | -> | Plus |
arm_3R | 15214826..15214998 | 868..1040 | 100 | -> | Plus |
arm_3R | 15215065..15215355 | 1041..1331 | 100 | -> | Plus |
arm_3R | 15215418..15215521 | 1332..1437 | 98 | | Plus |
BO12484.pep Sequence
Translation from 16 to 1453
> BO12484.pep
MKLWLGISLALLALGQTHGSIFERTFKRIHEEPPLPTTQNRADVVQTLWI
EQKLDHFDPEETRTWQMRYMLNDALYQSGAPLFIYLGGEWEISSGRITGG
HLYDMAKEHNALLAYTEHRYYGQSKPLPDLSNENIKYLNVNQSLADLAYF
INTIKQNHEGLSDSKVIIVGGSYSATMVTWFKKLYPDLVAGGWASSAPLL
AKVNFVEYKEITGQSIEQMGGSACYKRIENGIAEMETMIATKRGAEVKAL
LKLCEPFDVYSDLDVWTLFSEISDIFAGVVQTHNAGQIEGVCEKIMAGSN
DLIGVAGYLLDVFEESGGKCYDLSYDAITALLLDTNYNGNIMRQWIFQTC
NEYGWYQTSGSSAQPFGTKFPVTYYTTMCADLYGSEYSNEFISNQVSITN
QFFGGLFPNVENVYLTHGQLDPWRAMGIQDETQATIIPEHAHCKDFNSIS
SSDTAEMRASKERIAELVREWVKASFLDH
BO12484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-PB | 473 | CG3734-PB | 1..473 | 1..473 | 2508 | 100 | Plus |
CG3734-PA | 473 | CG3734-PA | 1..473 | 1..473 | 2508 | 100 | Plus |
CG18493-PA | 480 | CG18493-PA | 34..479 | 24..472 | 1337 | 54.1 | Plus |
CG3739-PB | 485 | CG3739-PB | 18..484 | 10..473 | 948 | 41.1 | Plus |
CG9953-PA | 508 | CG9953-PA | 11..496 | 5..468 | 669 | 33.4 | Plus |