Clone BO12484 Report

Search the DGRC for BO12484

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG3734-RA
Protein status:BO12484.pep: Imported from assembly
Sequenced Size:1453

Clone Sequence Records

BO12484.3prime Sequence

891 bp (765 high quality bases) assembled on 2006-05-08

> BO12484.3prime
ATGGTCTAGAAAGCTTGCTTTAACCCACTCGCGTACCAGTTCGGCAATAC
GTTCTTTGGAAGCTCTCATTTCAGCAGTGTCACTCGAGCTGATCGAATTG
AAGTCCTTGCAATGGGCATGCTCTGGAATAATAGTGGCCTGAGTTTCGTC
CTGAATACCCATCGCCCTCCAGGGATCCAATTGCCCATGGGTGAGGTAGA
CGTTTTCCACATTAGGAAATAATCCACCAAAGAACTGATTGGTGATGCTC
ACTTGGTTGCTAATGAACTCGTTGCTGTACTCTGAGCCATATAAATCGGC
ACACATGGTGGTATAATAGGTAACAGGGAATTTGGTACCAAATGGTTGGG
CACTAGAACCAGAGGTCTGATACCAACCATACTCATTGCAGGTCTGGAAG
ATCCACTGACGCATAATGTTGCCATTGTAATTAGTGTCCAGAAGTAATGC
AGTAATTGCATCATAGCTAAGGTCGTAGCACTTGCCACCGCTCTCCTCGA
ATACATCCAACAAATATCCAGCAACGCCAATAAGATCATTCGAACCGGCC
ATTATCTTCTCGCAAACACCCTCAATTTGACCAGCATTGTGAGTCTGGAC
CACGCCCGCAAAAATATCGGAAATCTCGCTGAACAAAGTCCAAACATCCA
GATCGCTGTAGACATCAAAGGGTTCGCACAACTTGAGCAGGGCCTTGACC
TCTGCACCTCGTTTGGTGGCTATCATGGTCTCCATCTCGGCAATGCCGTT
TTCAATTCGCTTGTAGCAGGCAGATCCACCCATTTGTTCGATGGATTGGC
CAGTGATTTCTTTGTACTCAACAAAGTTGACCTTGGCAAGGAGCGGAGCA
CTGGAAGCCCAACTCCAGCCACCAGATCGGGATAGAGCTTC

BO12484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-PA 1422 CG3734-RA 575..1419 863..19 4225 100 Minus
CG3734-PA 1422 CG3734-RA 546..574 891..863 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-RB 1536 CG3734-RB 596..1469 891..19 4345 99.9 Minus
CG3734-RA 1619 CG3734-RA 679..1552 891..19 4345 99.9 Minus
CG18493-RA 1566 CG18493-RA 1078..1150 396..324 185 83.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19389343..19389633 413..123 1455 100 Minus
3R 32079331 3R 19388811..19389043 819..587 1165 100 Minus
3R 32079331 3R 19389104..19389276 586..414 865 100 Minus
3R 32079331 3R 19389694..19389799 124..19 530 100 Minus
3R 32079331 3R 19388677..19388750 891..819 320 98.6 Minus
3R 32079331 3R 19391644..19391716 396..324 185 83.6 Minus
Blast to na_te.dros performed on 2015-02-01 04:47:30 has no hits.

BO12484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:12 Download gff for BO12484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3734-PA 546..1422 15..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:29 Download gff for BO12484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3734-PA 546..1422 15..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:29 Download gff for BO12484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 679..1555 15..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:32 Download gff for BO12484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 679..1555 15..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:32 Download gff for BO12484.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19388677..19388750 819..891 98 -> Minus
3R 19388812..19389043 587..818 100 -> Minus
3R 19389104..19389276 414..586 100 -> Minus
3R 19389343..19389633 123..413 100 -> Minus
3R 19389696..19389802 15..122 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:29 Download gff for BO12484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15214399..15214472 819..891 98 -> Minus
arm_3R 15214534..15214765 587..818 100 -> Minus
arm_3R 15214826..15214998 414..586 100 -> Minus
arm_3R 15215065..15215355 123..413 100 -> Minus
arm_3R 15215418..15215524 15..122 98   Minus

BO12484.5prime Sequence

845 bp (826 high quality bases) assembled on 2006-05-08

> BO12484.5prime
GAAGTTATCACTCGACATGAAGCTTTGGCTAGGCATTTCTTTGGCTCTGT
TGGCCCTGGGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGG
ATCCACGAGGAGCCACCACTGCCAACCACTCAGAATCGAGCTGATGTAGT
TCAAACCCTTTGGATTGAACAGAAGCTGGATCACTTCGACCCGGAAGAAA
CGCGCACATGGCAAATGCGCTATATGCTCAACGATGCACTTTACCAGTCT
GGAGCACCACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCGGG
CAGAATAACCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTC
TTTTGGCCTACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCT
GATCTATCGAACGAAAACATAAAATACCTAAATGTTAATCAGTCCCTGGC
CGATCTGGCTTATTTCATAAACACCATCAAGCAAAACCACGAAGGTTTGT
CCGATTCCAAGGTCATTATTGTTGGAGGTTCCTACTCTGCCACTATGGTC
ACCTGGTTCAAGAAGCTCTATCCCGATCTGGTGGCTGGAGGTTGGGCTTC
CAGTGCTCCGCTCCTTGCCAAGGTCAACTTTGTTGAGTACAAAGAAATCA
CTGGCCAATCCATCGAACAAATGGGTGGATCTGCCTGCTACAAGCGAATT
GAAAACGGCATTGCCGAGATGGAGACCATGATAGCCACCAAACGAGGTGC
AGAGGTCAAGGCCCTGCTCAAGTTGTGCGAACCCTTTGATGTCTACAGCG
ATCTGGATGTTTGGACTTTGTTCAGCGAGATTTCCGATATTTTTG

BO12484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-PA 1422 CG3734-RA 1..829 17..845 4120 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-RB 1536 CG3734-RB 44..879 11..845 4140 99.8 Plus
CG3734-RA 1619 CG3734-RA 127..962 11..845 4140 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19388515..19388750 400..635 1180 100 Plus
3R 32079331 3R 19388811..19389021 635..845 1055 100 Plus
3R 32079331 3R 19387994..19388194 17..217 990 99.5 Plus
3R 32079331 3R 19388272..19388454 217..399 915 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:24:26 has no hits.

BO12484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:13 Download gff for BO12484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3734-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:30 Download gff for BO12484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3734-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:48:39 Download gff for BO12484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 121..962 5..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:04 Download gff for BO12484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 121..962 5..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:04 Download gff for BO12484.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19388812..19389021 636..845 100   Plus
3R 19387981..19388194 5..217 98 -> Plus
3R 19388273..19388454 218..399 100 -> Plus
3R 19388515..19388750 400..635 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:48:39 Download gff for BO12484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15213703..15213916 5..217 98 -> Plus
arm_3R 15213995..15214176 218..399 100 -> Plus
arm_3R 15214237..15214472 400..635 100 -> Plus
arm_3R 15214534..15214743 636..845 100   Plus

BO12484.complete Sequence

1453 bp assembled on 2008-08-14

GenBank Submission: FJ632453

> BO12484.complete
GAAGTTATCACTCGACATGAAGCTTTGGCTAGGCATTTCTTTGGCTCTGT
TGGCCCTGGGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGG
ATCCACGAGGAGCCACCACTGCCAACCACTCAGAATCGAGCTGATGTAGT
TCAAACCCTTTGGATTGAACAGAAGCTGGATCACTTCGACCCGGAAGAAA
CGCGCACATGGCAAATGCGCTATATGCTCAACGATGCACTTTACCAGTCT
GGAGCACCACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCGGG
CAGAATAACCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTC
TTTTGGCCTACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCT
GATCTATCGAACGAAAACATAAAATACCTAAATGTTAATCAGTCCCTGGC
CGATCTGGCTTATTTCATAAACACCATCAAGCAAAACCACGAAGGTTTGT
CCGATTCCAAGGTCATTATTGTTGGAGGTTCCTACTCTGCCACTATGGTC
ACCTGGTTCAAGAAGCTCTATCCCGATCTGGTGGCTGGAGGTTGGGCTTC
CAGTGCTCCGCTCCTTGCCAAGGTCAACTTTGTTGAGTACAAAGAAATCA
CTGGCCAATCCATCGAACAAATGGGTGGATCTGCCTGCTACAAGCGAATT
GAAAACGGCATTGCCGAGATGGAGACCATGATAGCCACCAAACGAGGTGC
AGAGGTCAAGGCCCTGCTCAAGTTGTGCGAACCCTTTGATGTCTACAGCG
ATCTGGATGTTTGGACTTTGTTCAGCGAGATTTCCGATATTTTTGCGGGC
GTGGTCCAGACTCACAATGCTGGTCAAATTGAGGGTGTTTGCGAGAAGAT
AATGGCCGGTTCGAATGATCTTATTGGCGTTGCTGGATATTTGTTGGATG
TATTCGAGGAGAGCGGTGGCAAGTGCTACGACCTTAGCTATGATGCAATT
ACTGCATTACTTCTGGACACTAATTACAATGGCAACATTATGCGTCAGTG
GATCTTCCAGACCTGCAATGAGTATGGTTGGTATCAGACCTCTGGTTCTA
GTGCCCAACCATTTGGTACCAAATTCCCTGTTACCTATTATACCACCATG
TGTGCCGATTTATATGGCTCAGAGTACAGCAACGAGTTCATTAGCAACCA
AGTGAGCATCACCAATCAGTTCTTTGGTGGATTATTTCCTAATGTGGAAA
ACGTCTACCTCACCCATGGGCAATTGGATCCCTGGAGGGCGATGGGTATT
CAGGACGAAACTCAGGCCACTATTATTCCAGAGCATGCCCATTGCAAGGA
CTTCAATTCGATCAGCTCGAGTGACACTGCTGAAATGAGAGCTTCCAAAG
AACGTATTGCCGAACTGGTACGCGAGTGGGTTAAAGCAAGCTTTCTAGAC
CAT

BO12484.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-RB 1422 CG3734-PB 1..1419 17..1435 7080 99.9 Plus
CG3734-RA 1422 CG3734-PA 1..1419 17..1435 7080 99.9 Plus
CG18493-RA 1443 CG18493-PA 1063..1135 1058..1130 185 83.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-RB 1536 CG3734-RB 51..1469 17..1435 7080 99.9 Plus
CG3734-RA 1619 CG3734-RA 134..1552 17..1435 7080 99.9 Plus
CG18493-RA 1566 CG18493-RA 1078..1150 1058..1130 185 83.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19389343..19389633 1041..1331 1455 100 Plus
3R 32079331 3R 19388515..19388750 400..635 1180 100 Plus
3R 32079331 3R 19388811..19389043 635..867 1165 100 Plus
3R 32079331 3R 19387994..19388194 17..217 990 99.5 Plus
3R 32079331 3R 19388272..19388454 217..399 915 100 Plus
3R 32079331 3R 19389104..19389276 868..1040 865 100 Plus
3R 32079331 3R 19389694..19389799 1330..1435 530 100 Plus
3R 32079331 3R 19391644..19391716 1058..1130 185 83.6 Plus
Blast to na_te.dros performed on 2014-11-27 13:39:44 has no hits.

BO12484.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:18 Download gff for BO12484.complete
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 123..1557 5..1439 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:36 Download gff for BO12484.complete
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 134..1552 17..1437 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:02 Download gff for BO12484.complete
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 136..1554 17..1437 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:39 Download gff for BO12484.complete
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 134..1552 17..1437 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:39 Download gff for BO12484.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19389343..19389633 1041..1331 100 -> Plus
3R 19389696..19389799 1332..1437 98   Plus
3R 19387994..19388194 17..217 99 -> Plus
3R 19388273..19388454 218..399 100 -> Plus
3R 19388515..19388750 400..635 100 -> Plus
3R 19388812..19389043 636..867 100 -> Plus
3R 19389104..19389276 868..1040 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:36 Download gff for BO12484.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15213716..15213916 17..217 99 -> Plus
arm_3R 15213995..15214176 218..399 100 -> Plus
arm_3R 15214237..15214472 400..635 100 -> Plus
arm_3R 15214534..15214765 636..867 100 -> Plus
arm_3R 15214826..15214998 868..1040 100 -> Plus
arm_3R 15215065..15215355 1041..1331 100 -> Plus
arm_3R 15215418..15215521 1332..1437 98   Plus

BO12484.pep Sequence

Translation from 16 to 1453

> BO12484.pep
MKLWLGISLALLALGQTHGSIFERTFKRIHEEPPLPTTQNRADVVQTLWI
EQKLDHFDPEETRTWQMRYMLNDALYQSGAPLFIYLGGEWEISSGRITGG
HLYDMAKEHNALLAYTEHRYYGQSKPLPDLSNENIKYLNVNQSLADLAYF
INTIKQNHEGLSDSKVIIVGGSYSATMVTWFKKLYPDLVAGGWASSAPLL
AKVNFVEYKEITGQSIEQMGGSACYKRIENGIAEMETMIATKRGAEVKAL
LKLCEPFDVYSDLDVWTLFSEISDIFAGVVQTHNAGQIEGVCEKIMAGSN
DLIGVAGYLLDVFEESGGKCYDLSYDAITALLLDTNYNGNIMRQWIFQTC
NEYGWYQTSGSSAQPFGTKFPVTYYTTMCADLYGSEYSNEFISNQVSITN
QFFGGLFPNVENVYLTHGQLDPWRAMGIQDETQATIIPEHAHCKDFNSIS
SSDTAEMRASKERIAELVREWVKASFLDH

BO12484.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-PB 473 CG3734-PB 1..473 1..473 2508 100 Plus
CG3734-PA 473 CG3734-PA 1..473 1..473 2508 100 Plus
CG18493-PA 480 CG18493-PA 34..479 24..472 1337 54.1 Plus
CG3739-PB 485 CG3739-PB 18..484 10..473 948 41.1 Plus
CG9953-PA 508 CG9953-PA 11..496 5..468 669 33.4 Plus