Clone Sequence Records
BO12485.5prime Sequence
870 bp (809 high quality bases) assembled on 2006-05-08
> BO12485.5prime
GAAGTTATCACCCTACATGACGAGATGCAGTCTTGTATTGGGTCTCCTGC
TGGCCCTGGGCAACCTGATTCACGCCAGTAATATCACTGATAAAGTTTTT
GCAGACATTAAAGAGGGCATTGTGGCAGCTTTCGGAGATTTCAATTCCGA
CGAACTCACGGATGTTTTTGTAATTCGCGATGGGATGAAGAGGTTGCAGA
TACTCTTCGGGCACTATACGGAGCCTCTGCTTAAACTGGGACCAGACTGC
CAGTACGGAGATAAGACCATTGTTAGTGTTATACCTGGAGATTTTGATGG
CGACGCCCTGATGGACGTGCTGGTAAACCTGAAGGGGAAGGACGAGGAGA
CCTACGAGGTGCACATCAACTGGGGCAATACCACCGAACTGAAGTGCTCC
AATAAGTCACTTTTTACCAGTAAAGGAGAGGTAATGGCCCTGGACTTTAA
CCGCGATATGATTATCGATTTATACGGACTTGATTCTGCGGAAAGGCGTA
CATTCTGGATATTCAACAGCAGTAGGCTTCCGCCGGAGGCTGTACACCAA
GCAGAACCCACGGAGTTCAAGGAAAACTTAAGCATCCCCAATGCAAATGC
CTATCTCGATCTGAACGGCGACTTCTTGGCCGATCTGTTCTTGCAGACGA
AGAGCTCCTACGAAATATGGCACGGCATCAACGAGCGAGACAAGCAGGAG
AATTTCAGCTACCAATATCAAATTAAGTTCCAGCCGATCGGAGGCAATGA
TTATTACATCGGTCANGCTGTGTTCATGGACTTCGAGCTAAAGGGCGTGC
AGAACATTGTGGTTCCGTTTTGCATCCTATCCAATTGCCGGAACTCCTCA
ATCATGGTGCATGATGGCAC
BO12485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7739-PA | 1791 | CG7739-RA | 1..854 | 17..870 | 4226 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7739-RA | 2281 | CG7739-RA | 131..984 | 17..870 | 4244 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15562023..15562684 | 870..209 | 3284 | 99.7 | Minus |
| 3L | 28110227 | 3L | 15562742..15562935 | 210..17 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:21:36 has no hits.
BO12485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:14 Download gff for
BO12485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:32 Download gff for
BO12485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:50 Download gff for
BO12485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 131..984 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:38 Download gff for
BO12485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 131..984 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:38 Download gff for
BO12485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15562023..15562683 | 210..870 | 99 | <- | Minus |
| 3L | 15562743..15562935 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:50 Download gff for
BO12485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15555123..15555783 | 210..870 | 99 | <- | Minus |
| arm_3L | 15555843..15556035 | 17..209 | 100 | | Minus |
BO12485.complete Sequence
1822 bp assembled on 2008-08-14
GenBank Submission: FJ632454
> BO12485.complete
GAAGTTATCAGTCGACATGACGAGATGCAGTCTTGTATTGGGTCTCCTGC
TGGCCCTGGGCAACCTGATTCACGCCAGTAATATCACTGATAAAGTTTTT
GCAGACATTAAAGAGGGCATTGTGGCAGCTTTCGGAGATTTCAATTCCGA
CGAACTCACGGATGTTTTTGTAATTCGCGATGGGATGAAGAGGTTGCAGA
TACTCTTCGGGCACTATACGGAGCCTCTGCTTAAACTGGGACCAGACTGC
CAGTACGGAGATAAGACCATTGTTAGTGTTATACCTGGAGATTTTGATGG
CGACGCCCTGATGGACGTGCTGGTAAACCTGAAGGGGAAGGACGAGGAGA
CCTACGAGGTGCACATCAACTGGGGCAATACCACCGAACTGAAGTGCTCC
AATAAGTCACTTTTTACCAGTAAAGGAGAGGTAATGGCCCTGGACTTTAA
CCGCGATATGATTATCGATTTATACGGACTTGATTCTGCGGAAAGGCGTA
CATTCTGGATATTCAACAGCAGTAGGCTTCCGCCGGAGGCTGTACACCAA
GCAGAACCCACGGAGTTCAAGGAAAACTTAAGCATCCCCAATGCAAATGC
CTATCTCGATCTGAACGGCGACTTCTTGGCCGATCTGTTCTTGCAGACGA
AGAGCTCCTACGAAATATGGCACGGCATCAACGAGCGAGACAAGCAGGAG
AATTTCAGCTACCAATATCAAATTAAGTTCCAGCCGATCGGAGGCAATGA
TTATTACATCGGTCAGGCTGTGTTCATGGACTTCGAGCTAAAGGGCGTGC
AGAACATTGTGGTTCCGTTTTGCATCCTATCCAATTGCCGGAACTCCTCA
ATCATGGTGCATGATGGCACAGATTTTCGTAATCTCCATGTAAACTTCCG
CGATCCACAGGGCGTCACTTGGGCCTTTGTGCCGCCCGTGTCAGATGATG
TTTACTTGCGAACCATTACGGCAAGGAGTGGGGACTTCAACCTGGATGGG
TATCCTGATCTCCTGGTTACTTTGCAGCCACTAAATGTGGATAAGCCAGT
GATGCAGACGTTCCTGCTAGAGAATGTTCCTTGCACAACGTGTAACAAGC
CGCTAAAGCGCACTTTCGAGGTACGCTGGAACGCCCTTTCGCCAATGGGC
AACAACACGGTGGCAGGTGCATTCTACGACTTCTACCAAGACGGTGTGCT
CGATGTGATTCTTATTCGAAAAGATGGAAAGGGCAAATACCAGCCACTCG
CTTTCCGGAACACGCTTGACTATGACGCGAACTTTGTGAAGGTGATTGTG
CTAACTGGCTTGGATAACAAGCAGAACCCGGAGAGACGCACTCCTTTGGG
TAGGAAAAAGCGAACCTATGGCACTAACTTGCCAGGACCACGGATCACCT
ACAGTACCACTACTCAGGATGGTGATCAGCAGTGCGGCAGTAGCGTTCAA
CTACCGCAGGCCTCGTATTTTGCTCTGCAACTACCGTATACGTGCTTTGG
CTTGGGCCGAACGCCAAATTTCGTGGATCAATTGACTGTAGGACTGGGCA
GCAAGTTGCGCAACTGGACGCAACTTATACCGAACTCTCAGATAATTGTG
GTTCCAAAACCCCTAAACGAACCGTCGCACTGGAAGGCTCAGCTTTTTGT
CACGCCTAGCAAACTGATTCTGATGAGCGTCGTGGCGCTGGGTGGCACCT
GCCTGGTTATCGTCTTTATCATCCTTGTGCTATATATCAAGGAAAAGCGC
GAGGATAAACAGGAACGCTTGCAGGAGTCTCACAGATTCCATTTCGATGC
AATGGCAAGCTTTCTAGACCAT
BO12485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7739-RA | 1791 | CG7739-PA | 1..1788 | 17..1804 | 8925 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7739-RA | 2281 | CG7739-RA | 131..1918 | 17..1804 | 8925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15561089..15562684 | 1804..209 | 7965 | 99.9 | Minus |
| 3L | 28110227 | 3L | 15562742..15562935 | 210..17 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:59:02 has no hits.
BO12485.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:18 Download gff for
BO12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 127..1920 | 14..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:46 Download gff for
BO12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 131..1918 | 17..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:03 Download gff for
BO12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 129..1916 | 17..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:39 Download gff for
BO12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 131..1918 | 17..1806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:39 Download gff for
BO12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15561087..15562683 | 210..1806 | 99 | <- | Minus |
| 3L | 15562743..15562935 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:46 Download gff for
BO12485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15554187..15555783 | 210..1806 | 99 | <- | Minus |
| arm_3L | 15555843..15556035 | 17..209 | 100 | | Minus |
BO12485.pep Sequence
Translation from 16 to 1822
> BO12485.pep
MTRCSLVLGLLLALGNLIHASNITDKVFADIKEGIVAAFGDFNSDELTDV
FVIRDGMKRLQILFGHYTEPLLKLGPDCQYGDKTIVSVIPGDFDGDALMD
VLVNLKGKDEETYEVHINWGNTTELKCSNKSLFTSKGEVMALDFNRDMII
DLYGLDSAERRTFWIFNSSRLPPEAVHQAEPTEFKENLSIPNANAYLDLN
GDFLADLFLQTKSSYEIWHGINERDKQENFSYQYQIKFQPIGGNDYYIGQ
AVFMDFELKGVQNIVVPFCILSNCRNSSIMVHDGTDFRNLHVNFRDPQGV
TWAFVPPVSDDVYLRTITARSGDFNLDGYPDLLVTLQPLNVDKPVMQTFL
LENVPCTTCNKPLKRTFEVRWNALSPMGNNTVAGAFYDFYQDGVLDVILI
RKDGKGKYQPLAFRNTLDYDANFVKVIVLTGLDNKQNPERRTPLGRKKRT
YGTNLPGPRITYSTTTQDGDQQCGSSVQLPQASYFALQLPYTCFGLGRTP
NFVDQLTVGLGSKLRNWTQLIPNSQIIVVPKPLNEPSHWKAQLFVTPSKL
ILMSVVALGGTCLVIVFIILVLYIKEKREDKQERLQESHRFHFDAMASFL
DH
BO12485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7739-PA | 596 | CG7739-PA | 1..596 | 1..596 | 3153 | 100 | Plus |
