Clone BO12489 Report

Search the DGRC for BO12489

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:89
Vector:pDNR-Dual
Associated Gene/Transcripttsl-RA
Protein status:BO12489.pep: Imported from assembly
Sequenced Size:1093

Clone Sequence Records

BO12489.3prime Sequence

888 bp (846 high quality bases) assembled on 2006-05-08

> BO12489.3prime
ATGGTCTAGAAAGCTTGCTCGGGTGGGATGACTCTGCGGCATGTTAAGCT
CCCAGAGCTTCACATTGTTGTCGAGAACCTCGTGGTACCAGCTCTCCTTT
TCCGGCTCCTCCCGGAAGATGGGCTTCAGCGACTTGAGGTCCAACTGCAG
TATGGCATCGTTGCCGAGCAGCGAGTCCAGGGATCGCAGTAGAGTACTAT
TACCGTGCAGTTTCAGCAGGGTCACATACTTGACCACATAGTACTCGTAC
TGCAGCTTCCTTCTCGCCCATCTTTCCACTGTAGCATTGGCACTAGCCGA
TCGAATCTGGCCCAGATGGGCGGCAAACCAGGGCGCAAAGTAGTTGTAAA
GATCCAACTTGGACAGTCCGTTCAGACCTTTACTCTTGATTCGCTCCTTG
ATCATGCTGTAGTTCTTCCTGCTGTACACAAACACCTGATACAGCGAATT
GCCGGTGGTGTATGAGTTTACGTAGTGGGTGCCCACATCTTCCATAAATC
GCACTGCGGAAGTTATATTTCCGATTTGCAGTTGATCCATTCTCGATCGC
ACATCCGGCTCCAAGGGTTGGTGCACCGGAATCTCAGCGTTAAGACGCCC
CGTTTCCCTGAAGCGCACCACCCTCACCAAAACATACGAGTAATCGCCTT
GGATGAAAGATGTATTGATGCCCAGCTTCTTGGCCGCATTATCCGGAAAC
CATCCGCCAGTAAATGCCTCCCACGGTTTGTCCATTCGCTCAATGGANAA
GTCACGGAAGTAGGCCTGGAACAGTTGCCTCCGATTCTCGCAGAACTCCA
TGTGAAAGTCTCCATGAAAGATTCCGGGCGTGGTGTCTTCATGACTCTCC
CGCAGGCCACTCAGATTCCTATAGATGTTTTTGGTGGG

BO12489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6705-PB 1062 tsl-RB 190..1059 888..19 4281 99.6 Minus
CG6705-PA 1062 tsl-RA 190..1059 888..19 4281 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
tsl-RC 2059 CG6705-RC 949..1818 888..19 4309 99.7 Minus
tsl-RA 1871 CG6705-RA 761..1630 888..19 4309 99.7 Minus
tsl-RB 1375 CG6705-RB 265..1134 888..19 4309 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21778355..21779204 19..868 4209 99.6 Plus
Blast to na_te.dros performed 2015-02-10 17:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 7136..7233 142..48 112 62.6 Minus

BO12489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:17 Download gff for BO12489.3prime
Subject Subject Range Query Range Percent Splice Strand
tsl-PB 190..1062 18..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:35 Download gff for BO12489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6705-PA 190..1062 18..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 22:00:39 Download gff for BO12489.3prime
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 265..1139 12..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:02 Download gff for BO12489.3prime
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 265..1139 12..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:02 Download gff for BO12489.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21778350..21779203 12..867 99 <- Plus
3R 21779552..21779572 868..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 22:00:39 Download gff for BO12489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17604072..17604925 12..867 99 <- Plus
arm_3R 17605274..17605294 868..888 100   Plus

BO12489.5prime Sequence

885 bp (815 high quality bases) assembled on 2006-05-08

> BO12489.5prime
GAAGTTATCACCCTACATGCGGTCGTGGCCTGGCCTTTTCTGGCTGCTGA
CCCTGGCGCTCCTGGCGGATGGAGGTCGTCGCGAGTCCCAGCTCCGGATC
GGCAAGGCCATCAATATATTCCTGCGCTATGGCTACCTGGGAATCTCCAT
GCGTGTGATACCGCTCAATGACAACTCGGAGCCGGATCGCTGGGTGTTTA
AGGAGCCCACCAAAAACATCTATAGGAATCTGAGTGGCCTGGCGGAGAGT
CATGAAGACACCACGCCCGGAATCTTTCATGGAGACTTTCACATGGAGTT
CTGCGAGAATCGGAGGCAACTGTTCCAGGCCTACTTCCGTGACTTTTCCA
TTGAGCGAATGGACAAACCGTGGGAGGCATTTACTGGCGGATGGTTTCCG
GATAATGCGGCCAAGAAGCTGGGCATCAATACATCTTTCATCCAAGGCGA
TTACTCGTATGTTTTGGTGAGGGTGGTGCGCTTCAGGGAAACGGGGCGTC
TTAACGCTGAGATTCCGGTGCACCAACCCTTGGAGCCGGATGTGCGATCG
AGAATGGATCAACTGCAAATCGGAAATATAACTTCCGCAGTGCGATTTAT
GGAAGATGTGGGCACCCACTACGTAAACTCATACACCACCGGCAATTCGC
TGTATCAGGTGTTTGTGTACAGCAGGAAGAACTACAGCATGATCAAGGAG
CGAATCAAGAGTAAAGGTCTGAACGGACTGTCCAAGTTGGATCTTTACAA
CTACTTTGCGCCCTGGTTTGCCGCCCATCTGGGCCAGATTCGATCGGCTA
GTGCCAATGCTACAGTGGAAAGATGGGCGAGAAGGAAGCTGCAGTACGAG
TACTATGTGGTCAAGTATGTGACCCTGCTGAAACT

BO12489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6705-PB 1062 tsl-RB 1..869 17..885 4345 100 Plus
CG6705-PA 1062 tsl-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
tsl-RC 2059 CG6705-RC 760..1628 17..885 4345 100 Plus
tsl-RA 1871 CG6705-RA 572..1440 17..885 4345 100 Plus
tsl-RB 1375 CG6705-RB 76..944 17..885 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21778545..21779204 885..226 3300 100 Minus
3R 32079331 3R 21779552..21779761 226..17 1050 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:24:32 has no hits.

BO12489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:18 Download gff for BO12489.5prime
Subject Subject Range Query Range Percent Splice Strand
tsl-PB 1..869 17..885 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:37 Download gff for BO12489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6705-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:47 Download gff for BO12489.5prime
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 76..944 17..885 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:02 Download gff for BO12489.5prime
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 76..944 17..885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:02 Download gff for BO12489.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21778545..21779203 227..885 100 <- Minus
3R 21779552..21779761 17..226 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:47 Download gff for BO12489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17604267..17604925 227..885 100 <- Minus
arm_3R 17605274..17605483 17..226 100   Minus

BO12489.complete Sequence

1093 bp assembled on 2008-08-14

GenBank Submission: FJ632455

> BO12489.complete
GAAGTTATCAGTCGACATGCGGTCGTGGCCTGGCCTTTTCTGGCTGCTGA
CCCTGGCGCTCCTGGCGGATGGAGGTCGTCGCGAGTCCCAGCTCCGGATC
GGCAAGGCCATCAATATATTCCTGCGCTATGGCTACCTGGGAATCTCCAT
GCGTGTGATACCGCTCAATGACAACTCGGAGCCGGATCGCTGGGTGTTTA
AGGAGCCCACCAAAAACATCTATAGGAATCTGAGTGGCCTGGCGGAGAGT
CATGAAGACACCACGCCCGGAATCTTTCATGGAGACTTTCACATGGAGTT
CTGCGAGAATCGGAGGCAACTGTTCCAGGCCTACTTCCGTGACTTTTCCA
TTGAGCGAATGGACAAACCGTGGGAGGCATTTACTGGCGGATGGTTTCCG
GATAATGCGGCCAAGAAGCTGGGCATCAATACATCTTTCATCCAAGGCGA
TTACTCGTATGTTTTGGTGAGGGTGGTGCGCTTCAGGGAAACGGGGCGTC
TTAACGCTGAGATTCCGGTGCACCAACCCTTGGAGCCGGATGTGCGATCG
AGAATGGATCAACTGCAAATCGGAAATATAACTTCCGCAGTGCGATTTAT
GGAAGATGTGGGCACCCACTACGTAAACTCATACACCACCGGCAATTCGC
TGTATCAGGTGTTTGTGTACAGCAGGAAGAACTACAGCATGATCAAGGAG
CGAATCAAGAGTAAAGGTCTGAACGGACTGTCCAAGTTGGATCTTTACAA
CTACTTTGCGCCCTGGTTTGCCGCCCATCTGGGCCAGATTCGATCGGCTA
GTGCCAATGCTACAGTGGAAAGATGGGCGAGAAGGAAGCTGCAGTACGAG
TACTATGTGGTCAAGTATGTGACCCTGCTGAAACTGCACGGTAATAGTAC
TCTACTGCGATCCCTGGACTCGCTGCTCGGCAACGATGCCATACTGCAGT
TGGACCTCAAGTCGCTGAAGCCCATCTTCCGGGAGGAGCCGGAAAAGGAG
AGCTGGTACCACGAGGTTCTCGACAACAATGTGAAGCTCTGGGAGCTTAA
CATGCCGCAGAGTCATCCCACCCGAGCAAGCTTTCTAGACCAT

BO12489.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
tsl-RC 1062 CG6705-PC 1..1059 17..1075 5295 100 Plus
tsl-RA 1062 CG6705-PA 1..1059 17..1075 5295 100 Plus
tsl-RB 1062 CG6705-PB 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
tsl-RC 2059 CG6705-RC 760..1818 17..1075 5295 100 Plus
tsl-RA 1871 CG6705-RA 572..1630 17..1075 5295 100 Plus
tsl-RB 1375 CG6705-RB 76..1134 17..1075 5295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21778355..21779204 1075..226 4250 100 Minus
3R 32079331 3R 21779552..21779761 226..17 1050 100 Minus
Blast to na_te.dros performed 2014-11-27 12:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 7136..7233 952..1046 112 62.6 Plus

BO12489.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:14 Download gff for BO12489.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RA 566..1633 10..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:06 Download gff for BO12489.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 76..1134 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:33 Download gff for BO12489.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RA 570..1628 17..1077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:53 Download gff for BO12489.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 76..1134 17..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:53 Download gff for BO12489.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21778351..21779203 227..1077 99 <- Minus
3R 21779552..21779761 17..226 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:06 Download gff for BO12489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17604073..17604925 227..1077 99 <- Minus
arm_3R 17605274..17605483 17..226 100   Minus

BO12489.pep Sequence

Translation from 16 to 1093

> BO12489.pep
MRSWPGLFWLLTLALLADGGRRESQLRIGKAINIFLRYGYLGISMRVIPL
NDNSEPDRWVFKEPTKNIYRNLSGLAESHEDTTPGIFHGDFHMEFCENRR
QLFQAYFRDFSIERMDKPWEAFTGGWFPDNAAKKLGINTSFIQGDYSYVL
VRVVRFRETGRLNAEIPVHQPLEPDVRSRMDQLQIGNITSAVRFMEDVGT
HYVNSYTTGNSLYQVFVYSRKNYSMIKERIKSKGLNGLSKLDLYNYFAPW
FAAHLGQIRSASANATVERWARRKLQYEYYVVKYVTLLKLHGNSTLLRSL
DSLLGNDAILQLDLKSLKPIFREEPEKESWYHEVLDNNVKLWELNMPQSH
PTRASFLDH

BO12489.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
tsl-PC 353 CG6705-PC 1..353 1..353 1874 100 Plus
tsl-PA 353 CG6705-PA 1..353 1..353 1874 100 Plus
tsl-PB 353 CG6705-PB 1..353 1..353 1874 100 Plus