Clone Sequence Records
BO12489.3prime Sequence
888 bp (846 high quality bases) assembled on 2006-05-08
> BO12489.3prime
ATGGTCTAGAAAGCTTGCTCGGGTGGGATGACTCTGCGGCATGTTAAGCT
CCCAGAGCTTCACATTGTTGTCGAGAACCTCGTGGTACCAGCTCTCCTTT
TCCGGCTCCTCCCGGAAGATGGGCTTCAGCGACTTGAGGTCCAACTGCAG
TATGGCATCGTTGCCGAGCAGCGAGTCCAGGGATCGCAGTAGAGTACTAT
TACCGTGCAGTTTCAGCAGGGTCACATACTTGACCACATAGTACTCGTAC
TGCAGCTTCCTTCTCGCCCATCTTTCCACTGTAGCATTGGCACTAGCCGA
TCGAATCTGGCCCAGATGGGCGGCAAACCAGGGCGCAAAGTAGTTGTAAA
GATCCAACTTGGACAGTCCGTTCAGACCTTTACTCTTGATTCGCTCCTTG
ATCATGCTGTAGTTCTTCCTGCTGTACACAAACACCTGATACAGCGAATT
GCCGGTGGTGTATGAGTTTACGTAGTGGGTGCCCACATCTTCCATAAATC
GCACTGCGGAAGTTATATTTCCGATTTGCAGTTGATCCATTCTCGATCGC
ACATCCGGCTCCAAGGGTTGGTGCACCGGAATCTCAGCGTTAAGACGCCC
CGTTTCCCTGAAGCGCACCACCCTCACCAAAACATACGAGTAATCGCCTT
GGATGAAAGATGTATTGATGCCCAGCTTCTTGGCCGCATTATCCGGAAAC
CATCCGCCAGTAAATGCCTCCCACGGTTTGTCCATTCGCTCAATGGANAA
GTCACGGAAGTAGGCCTGGAACAGTTGCCTCCGATTCTCGCAGAACTCCA
TGTGAAAGTCTCCATGAAAGATTCCGGGCGTGGTGTCTTCATGACTCTCC
CGCAGGCCACTCAGATTCCTATAGATGTTTTTGGTGGG
BO12489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6705-PB | 1062 | tsl-RB | 190..1059 | 888..19 | 4281 | 99.6 | Minus |
CG6705-PA | 1062 | tsl-RA | 190..1059 | 888..19 | 4281 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tsl-RC | 2059 | CG6705-RC | 949..1818 | 888..19 | 4309 | 99.7 | Minus |
tsl-RA | 1871 | CG6705-RA | 761..1630 | 888..19 | 4309 | 99.7 | Minus |
tsl-RB | 1375 | CG6705-RB | 265..1134 | 888..19 | 4309 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21778355..21779204 | 19..868 | 4209 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-10 17:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 7136..7233 | 142..48 | 112 | 62.6 | Minus |
BO12489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:17 Download gff for
BO12489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-PB | 190..1062 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:35 Download gff for
BO12489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6705-PA | 190..1062 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 22:00:39 Download gff for
BO12489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-RB | 265..1139 | 12..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:02 Download gff for
BO12489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-RB | 265..1139 | 12..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:02 Download gff for
BO12489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21778350..21779203 | 12..867 | 99 | <- | Plus |
3R | 21779552..21779572 | 868..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 22:00:39 Download gff for
BO12489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17604072..17604925 | 12..867 | 99 | <- | Plus |
arm_3R | 17605274..17605294 | 868..888 | 100 | | Plus |
BO12489.5prime Sequence
885 bp (815 high quality bases) assembled on 2006-05-08
> BO12489.5prime
GAAGTTATCACCCTACATGCGGTCGTGGCCTGGCCTTTTCTGGCTGCTGA
CCCTGGCGCTCCTGGCGGATGGAGGTCGTCGCGAGTCCCAGCTCCGGATC
GGCAAGGCCATCAATATATTCCTGCGCTATGGCTACCTGGGAATCTCCAT
GCGTGTGATACCGCTCAATGACAACTCGGAGCCGGATCGCTGGGTGTTTA
AGGAGCCCACCAAAAACATCTATAGGAATCTGAGTGGCCTGGCGGAGAGT
CATGAAGACACCACGCCCGGAATCTTTCATGGAGACTTTCACATGGAGTT
CTGCGAGAATCGGAGGCAACTGTTCCAGGCCTACTTCCGTGACTTTTCCA
TTGAGCGAATGGACAAACCGTGGGAGGCATTTACTGGCGGATGGTTTCCG
GATAATGCGGCCAAGAAGCTGGGCATCAATACATCTTTCATCCAAGGCGA
TTACTCGTATGTTTTGGTGAGGGTGGTGCGCTTCAGGGAAACGGGGCGTC
TTAACGCTGAGATTCCGGTGCACCAACCCTTGGAGCCGGATGTGCGATCG
AGAATGGATCAACTGCAAATCGGAAATATAACTTCCGCAGTGCGATTTAT
GGAAGATGTGGGCACCCACTACGTAAACTCATACACCACCGGCAATTCGC
TGTATCAGGTGTTTGTGTACAGCAGGAAGAACTACAGCATGATCAAGGAG
CGAATCAAGAGTAAAGGTCTGAACGGACTGTCCAAGTTGGATCTTTACAA
CTACTTTGCGCCCTGGTTTGCCGCCCATCTGGGCCAGATTCGATCGGCTA
GTGCCAATGCTACAGTGGAAAGATGGGCGAGAAGGAAGCTGCAGTACGAG
TACTATGTGGTCAAGTATGTGACCCTGCTGAAACT
BO12489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6705-PB | 1062 | tsl-RB | 1..869 | 17..885 | 4345 | 100 | Plus |
CG6705-PA | 1062 | tsl-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tsl-RC | 2059 | CG6705-RC | 760..1628 | 17..885 | 4345 | 100 | Plus |
tsl-RA | 1871 | CG6705-RA | 572..1440 | 17..885 | 4345 | 100 | Plus |
tsl-RB | 1375 | CG6705-RB | 76..944 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21778545..21779204 | 885..226 | 3300 | 100 | Minus |
3R | 32079331 | 3R | 21779552..21779761 | 226..17 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:24:32 has no hits.
BO12489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:18 Download gff for
BO12489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-PB | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:37 Download gff for
BO12489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6705-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:47 Download gff for
BO12489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-RB | 76..944 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:02 Download gff for
BO12489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-RB | 76..944 | 17..885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:02 Download gff for
BO12489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21778545..21779203 | 227..885 | 100 | <- | Minus |
3R | 21779552..21779761 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:47 Download gff for
BO12489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17604267..17604925 | 227..885 | 100 | <- | Minus |
arm_3R | 17605274..17605483 | 17..226 | 100 | | Minus |
BO12489.complete Sequence
1093 bp assembled on 2008-08-14
GenBank Submission: FJ632455
> BO12489.complete
GAAGTTATCAGTCGACATGCGGTCGTGGCCTGGCCTTTTCTGGCTGCTGA
CCCTGGCGCTCCTGGCGGATGGAGGTCGTCGCGAGTCCCAGCTCCGGATC
GGCAAGGCCATCAATATATTCCTGCGCTATGGCTACCTGGGAATCTCCAT
GCGTGTGATACCGCTCAATGACAACTCGGAGCCGGATCGCTGGGTGTTTA
AGGAGCCCACCAAAAACATCTATAGGAATCTGAGTGGCCTGGCGGAGAGT
CATGAAGACACCACGCCCGGAATCTTTCATGGAGACTTTCACATGGAGTT
CTGCGAGAATCGGAGGCAACTGTTCCAGGCCTACTTCCGTGACTTTTCCA
TTGAGCGAATGGACAAACCGTGGGAGGCATTTACTGGCGGATGGTTTCCG
GATAATGCGGCCAAGAAGCTGGGCATCAATACATCTTTCATCCAAGGCGA
TTACTCGTATGTTTTGGTGAGGGTGGTGCGCTTCAGGGAAACGGGGCGTC
TTAACGCTGAGATTCCGGTGCACCAACCCTTGGAGCCGGATGTGCGATCG
AGAATGGATCAACTGCAAATCGGAAATATAACTTCCGCAGTGCGATTTAT
GGAAGATGTGGGCACCCACTACGTAAACTCATACACCACCGGCAATTCGC
TGTATCAGGTGTTTGTGTACAGCAGGAAGAACTACAGCATGATCAAGGAG
CGAATCAAGAGTAAAGGTCTGAACGGACTGTCCAAGTTGGATCTTTACAA
CTACTTTGCGCCCTGGTTTGCCGCCCATCTGGGCCAGATTCGATCGGCTA
GTGCCAATGCTACAGTGGAAAGATGGGCGAGAAGGAAGCTGCAGTACGAG
TACTATGTGGTCAAGTATGTGACCCTGCTGAAACTGCACGGTAATAGTAC
TCTACTGCGATCCCTGGACTCGCTGCTCGGCAACGATGCCATACTGCAGT
TGGACCTCAAGTCGCTGAAGCCCATCTTCCGGGAGGAGCCGGAAAAGGAG
AGCTGGTACCACGAGGTTCTCGACAACAATGTGAAGCTCTGGGAGCTTAA
CATGCCGCAGAGTCATCCCACCCGAGCAAGCTTTCTAGACCAT
BO12489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tsl-RC | 1062 | CG6705-PC | 1..1059 | 17..1075 | 5295 | 100 | Plus |
tsl-RA | 1062 | CG6705-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
tsl-RB | 1062 | CG6705-PB | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tsl-RC | 2059 | CG6705-RC | 760..1818 | 17..1075 | 5295 | 100 | Plus |
tsl-RA | 1871 | CG6705-RA | 572..1630 | 17..1075 | 5295 | 100 | Plus |
tsl-RB | 1375 | CG6705-RB | 76..1134 | 17..1075 | 5295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21778355..21779204 | 1075..226 | 4250 | 100 | Minus |
3R | 32079331 | 3R | 21779552..21779761 | 226..17 | 1050 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 12:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 7136..7233 | 952..1046 | 112 | 62.6 | Plus |
BO12489.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:14 Download gff for
BO12489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-RA | 566..1633 | 10..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:06 Download gff for
BO12489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-RB | 76..1134 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:33 Download gff for
BO12489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-RA | 570..1628 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:53 Download gff for
BO12489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tsl-RB | 76..1134 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:53 Download gff for
BO12489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21778351..21779203 | 227..1077 | 99 | <- | Minus |
3R | 21779552..21779761 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:06 Download gff for
BO12489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17604073..17604925 | 227..1077 | 99 | <- | Minus |
arm_3R | 17605274..17605483 | 17..226 | 100 | | Minus |
BO12489.pep Sequence
Translation from 16 to 1093
> BO12489.pep
MRSWPGLFWLLTLALLADGGRRESQLRIGKAINIFLRYGYLGISMRVIPL
NDNSEPDRWVFKEPTKNIYRNLSGLAESHEDTTPGIFHGDFHMEFCENRR
QLFQAYFRDFSIERMDKPWEAFTGGWFPDNAAKKLGINTSFIQGDYSYVL
VRVVRFRETGRLNAEIPVHQPLEPDVRSRMDQLQIGNITSAVRFMEDVGT
HYVNSYTTGNSLYQVFVYSRKNYSMIKERIKSKGLNGLSKLDLYNYFAPW
FAAHLGQIRSASANATVERWARRKLQYEYYVVKYVTLLKLHGNSTLLRSL
DSLLGNDAILQLDLKSLKPIFREEPEKESWYHEVLDNNVKLWELNMPQSH
PTRASFLDH
BO12489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tsl-PC | 353 | CG6705-PC | 1..353 | 1..353 | 1874 | 100 | Plus |
tsl-PA | 353 | CG6705-PA | 1..353 | 1..353 | 1874 | 100 | Plus |
tsl-PB | 353 | CG6705-PB | 1..353 | 1..353 | 1874 | 100 | Plus |