Clone Sequence Records
BO12492.3prime Sequence
551 bp (550 high quality bases) assembled on 2006-05-08
> BO12492.3prime
ATGGTCTAGAAAGCTTGCGTACTGATACGTTCCAAACACTGTACAGACGC
AAAAGAGACTGGTGTTGCTGAAGACCTCGGAGACGGAAGTGTCGCAGTCG
CAATCCCAGCAGCAGCGCGAGTTGTAAGTGGCCCCCGCACCCAGCTCCTG
GCCTAGCATCACCTGGACCACGTGCTTGTACCGCTTCACCAGGGAGCTGC
TGGCTATCTGCTGGTTCACCTCGTCGGCGATCTCACTGGTCCACTTCTTG
GCGACGTCCTTGTCATAGGTTTTGTCTTTGAGTTTCTCGGCCATAACGTT
GTTCATTATGCTCTTGATGGTGGGCAGGGGAAACATCTCCCCAAAGGCCG
GTCGCATGCTATAGGCGGTGGGCTGGTCGCCGGGCTTTTCCGACTTTTCT
TGATTTTCCAAACCATCGGCTGAGCCGGAGTGCAGACTTCCTGACGCCGA
CTTTTCCGACTTCCTATCCGCTGGGTTGGGCACTGTTAAAGTCTGGACGG
ATTTGGTTGTTTCCTCAGTGGACTGTTTGTCAGCCATGTCGACTGATAAC
T
BO12492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-PA | 522 | CG5359-RA | 1..519 | 537..19 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-RC | 1241 | CG5359-RC | 76..594 | 537..19 | 2595 | 100 | Minus |
CG5359-RB | 713 | CG5359-RB | 76..594 | 537..19 | 2595 | 100 | Minus |
CG5359-RA | 1244 | CG5359-RA | 76..594 | 537..19 | 2595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10000940..10001201 | 276..537 | 1310 | 100 | Plus |
3R | 32079331 | 3R | 10000625..10000884 | 19..278 | 1300 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 12:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 111..178 | 477..542 | 110 | 64.7 | Plus |
BO12492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:21 Download gff for
BO12492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-PA | 1..522 | 15..537 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:40 Download gff for
BO12492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-PA | 1..522 | 15..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:38 Download gff for
BO12492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 76..597 | 15..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:40 Download gff for
BO12492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 76..597 | 15..537 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:40 Download gff for
BO12492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10000621..10000881 | 15..275 | 99 | <- | Plus |
3R | 10000940..10001201 | 276..537 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:38 Download gff for
BO12492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5826343..5826603 | 15..275 | 99 | <- | Plus |
arm_3R | 5826662..5826923 | 276..537 | 100 | | Plus |
BO12492.5prime Sequence
551 bp (550 high quality bases) assembled on 2006-05-08
> BO12492.5prime
GAAGTTATCACTCGACATGGCTGACAAACAGTCCACTGAGGAAACAACCA
AATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAA
AAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAA
TCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGC
GACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATG
AACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGT
CGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAG
CCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTA
GGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGA
TTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCT
TTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACGCAAGCTTTCTAGAC
C
BO12492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-PA | 522 | CG5359-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-RC | 1241 | CG5359-RC | 76..594 | 17..535 | 2595 | 100 | Plus |
CG5359-RB | 713 | CG5359-RB | 76..594 | 17..535 | 2595 | 100 | Plus |
CG5359-RA | 1244 | CG5359-RA | 76..594 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10000940..10001201 | 278..17 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 10000625..10000884 | 535..276 | 1300 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 111..178 | 77..12 | 110 | 64.7 | Minus |
BO12492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:22 Download gff for
BO12492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-PA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:42 Download gff for
BO12492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-PA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:06 Download gff for
BO12492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 69..597 | 10..539 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:20 Download gff for
BO12492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 69..597 | 10..539 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:20 Download gff for
BO12492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10000621..10000881 | 279..539 | 99 | <- | Minus |
3R | 10000940..10001208 | 10..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:06 Download gff for
BO12492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5826343..5826603 | 279..539 | 99 | <- | Minus |
arm_3R | 5826662..5826930 | 10..278 | 98 | | Minus |
BO12492.complete Sequence
553 bp assembled on 2007-10-17
GenBank Submission: FJ638700
> BO12492.complete
GAAGTTATCAGTCGACATGGCTGACAAACAGTCCACTGAGGAAACAACCA
AATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAA
AAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAA
TCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGC
GACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATG
AACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGT
CGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAG
CCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTA
GGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGA
TTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCT
TTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACGCAAGCTTTCTAGAC
CAT
BO12492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-RC | 522 | CG5359-PC | 1..519 | 17..535 | 2595 | 100 | Plus |
CG5359-RB | 522 | CG5359-PB | 1..519 | 17..535 | 2595 | 100 | Plus |
CG5359-RA | 522 | CG5359-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-RC | 1241 | CG5359-RC | 76..594 | 17..535 | 2595 | 100 | Plus |
CG5359-RB | 713 | CG5359-RB | 76..594 | 17..535 | 2595 | 100 | Plus |
CG5359-RA | 1244 | CG5359-RA | 76..594 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10000940..10001201 | 278..17 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 10000625..10000884 | 535..276 | 1300 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 111..178 | 77..12 | 110 | 64.7 | Minus |
BO12492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:36 Download gff for
BO12492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:15 Download gff for
BO12492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 75..596 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:36 Download gff for
BO12492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 76..594 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:10 Download gff for
BO12492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 75..593 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:52 Download gff for
BO12492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 76..594 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:52 Download gff for
BO12492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10000623..10000881 | 279..537 | 99 | <- | Minus |
3R | 10000940..10001201 | 17..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:36 Download gff for
BO12492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5826345..5826603 | 279..537 | 99 | <- | Minus |
arm_3R | 5826662..5826923 | 17..278 | 100 | | Minus |
BO12492.pep Sequence
Translation from 16 to 553
> BO12492.pep
MADKQSTEETTKSVQTLTVPNPADRKSEKSASGSLHSGSADGLENQEKSE
KPGDQPTAYSMRPAFGEMFPLPTIKSIMNNVMAEKLKDKTYDKDVAKKWT
SEIADEVNQQIASSSLVKRYKHVVQVMLGQELGAGATYNSRCCWDCDCDT
SVSEVFSNTSLFCVCTVFGTYQYASFLDH
BO12492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-PC | 173 | CG5359-PC | 1..173 | 1..173 | 907 | 100 | Plus |
CG5359-PB | 173 | CG5359-PB | 1..173 | 1..173 | 907 | 100 | Plus |
CG5359-PA | 173 | CG5359-PA | 1..173 | 1..173 | 907 | 100 | Plus |
CG7276-PB | 171 | CG7276-PB | 2..171 | 10..173 | 285 | 39.4 | Plus |