Clone BO12492 Report

Search the DGRC for BO12492

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG5359-RA
Protein status:BO12492.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO12492.3prime Sequence

551 bp (550 high quality bases) assembled on 2006-05-08

> BO12492.3prime
ATGGTCTAGAAAGCTTGCGTACTGATACGTTCCAAACACTGTACAGACGC
AAAAGAGACTGGTGTTGCTGAAGACCTCGGAGACGGAAGTGTCGCAGTCG
CAATCCCAGCAGCAGCGCGAGTTGTAAGTGGCCCCCGCACCCAGCTCCTG
GCCTAGCATCACCTGGACCACGTGCTTGTACCGCTTCACCAGGGAGCTGC
TGGCTATCTGCTGGTTCACCTCGTCGGCGATCTCACTGGTCCACTTCTTG
GCGACGTCCTTGTCATAGGTTTTGTCTTTGAGTTTCTCGGCCATAACGTT
GTTCATTATGCTCTTGATGGTGGGCAGGGGAAACATCTCCCCAAAGGCCG
GTCGCATGCTATAGGCGGTGGGCTGGTCGCCGGGCTTTTCCGACTTTTCT
TGATTTTCCAAACCATCGGCTGAGCCGGAGTGCAGACTTCCTGACGCCGA
CTTTTCCGACTTCCTATCCGCTGGGTTGGGCACTGTTAAAGTCTGGACGG
ATTTGGTTGTTTCCTCAGTGGACTGTTTGTCAGCCATGTCGACTGATAAC
T

BO12492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-PA 522 CG5359-RA 1..519 537..19 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 1241 CG5359-RC 76..594 537..19 2595 100 Minus
CG5359-RB 713 CG5359-RB 76..594 537..19 2595 100 Minus
CG5359-RA 1244 CG5359-RA 76..594 537..19 2595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10000940..10001201 276..537 1310 100 Plus
3R 32079331 3R 10000625..10000884 19..278 1300 100 Plus
Blast to na_te.dros performed 2015-02-06 12:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT1 769 Dbuz\BuT1 BUT1 769bp 111..178 477..542 110 64.7 Plus

BO12492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:21 Download gff for BO12492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-PA 1..522 15..537 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:40 Download gff for BO12492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-PA 1..522 15..537 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:38 Download gff for BO12492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 76..597 15..537 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:40 Download gff for BO12492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 76..597 15..537 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:40 Download gff for BO12492.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10000621..10000881 15..275 99 <- Plus
3R 10000940..10001201 276..537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:38 Download gff for BO12492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5826343..5826603 15..275 99 <- Plus
arm_3R 5826662..5826923 276..537 100   Plus

BO12492.5prime Sequence

551 bp (550 high quality bases) assembled on 2006-05-08

> BO12492.5prime
GAAGTTATCACTCGACATGGCTGACAAACAGTCCACTGAGGAAACAACCA
AATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAA
AAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAA
TCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGC
GACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATG
AACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGT
CGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAG
CCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTA
GGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGA
TTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCT
TTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACGCAAGCTTTCTAGAC
C

BO12492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-PA 522 CG5359-RA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 1241 CG5359-RC 76..594 17..535 2595 100 Plus
CG5359-RB 713 CG5359-RB 76..594 17..535 2595 100 Plus
CG5359-RA 1244 CG5359-RA 76..594 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10000940..10001201 278..17 1310 100 Minus
3R 32079331 3R 10000625..10000884 535..276 1300 100 Minus
Blast to na_te.dros performed 2015-02-11 17:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT1 769 Dbuz\BuT1 BUT1 769bp 111..178 77..12 110 64.7 Minus

BO12492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:22 Download gff for BO12492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-PA 1..522 17..539 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:42 Download gff for BO12492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-PA 1..522 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:06 Download gff for BO12492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 69..597 10..539 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:20 Download gff for BO12492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 69..597 10..539 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:20 Download gff for BO12492.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10000621..10000881 279..539 99 <- Minus
3R 10000940..10001208 10..278 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:06 Download gff for BO12492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5826343..5826603 279..539 99 <- Minus
arm_3R 5826662..5826930 10..278 98   Minus

BO12492.complete Sequence

553 bp assembled on 2007-10-17

GenBank Submission: FJ638700

> BO12492.complete
GAAGTTATCAGTCGACATGGCTGACAAACAGTCCACTGAGGAAACAACCA
AATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAA
AAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAA
TCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGC
GACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATG
AACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGT
CGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAG
CCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTA
GGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGA
TTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCT
TTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACGCAAGCTTTCTAGAC
CAT

BO12492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 522 CG5359-PC 1..519 17..535 2595 100 Plus
CG5359-RB 522 CG5359-PB 1..519 17..535 2595 100 Plus
CG5359-RA 522 CG5359-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 1241 CG5359-RC 76..594 17..535 2595 100 Plus
CG5359-RB 713 CG5359-RB 76..594 17..535 2595 100 Plus
CG5359-RA 1244 CG5359-RA 76..594 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10000940..10001201 278..17 1310 100 Minus
3R 32079331 3R 10000625..10000884 535..276 1300 100 Minus
Blast to na_te.dros performed 2014-11-27 13:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT1 769 Dbuz\BuT1 BUT1 769bp 111..178 77..12 110 64.7 Minus

BO12492.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:36 Download gff for BO12492.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 1..522 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:15 Download gff for BO12492.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 75..596 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:36 Download gff for BO12492.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 76..594 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:10 Download gff for BO12492.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 75..593 17..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:52 Download gff for BO12492.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 76..594 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:52 Download gff for BO12492.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10000623..10000881 279..537 99 <- Minus
3R 10000940..10001201 17..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:36 Download gff for BO12492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5826345..5826603 279..537 99 <- Minus
arm_3R 5826662..5826923 17..278 100   Minus

BO12492.pep Sequence

Translation from 16 to 553

> BO12492.pep
MADKQSTEETTKSVQTLTVPNPADRKSEKSASGSLHSGSADGLENQEKSE
KPGDQPTAYSMRPAFGEMFPLPTIKSIMNNVMAEKLKDKTYDKDVAKKWT
SEIADEVNQQIASSSLVKRYKHVVQVMLGQELGAGATYNSRCCWDCDCDT
SVSEVFSNTSLFCVCTVFGTYQYASFLDH

BO12492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-PC 173 CG5359-PC 1..173 1..173 907 100 Plus
CG5359-PB 173 CG5359-PB 1..173 1..173 907 100 Plus
CG5359-PA 173 CG5359-PA 1..173 1..173 907 100 Plus
CG7276-PB 171 CG7276-PB 2..171 10..173 285 39.4 Plus