Clone Sequence Records
BO12495.3prime Sequence
800 bp (799 high quality bases) assembled on 2006-05-08
> BO12495.3prime
ATGGTCTAGAAAGCTTGCGATGCTGTTAGCAGTGCTCACCACCCAAGAGC
GGAGGACAGCAACATCGGCATAGACACCGGGGTAGTTGGAGTAAGCGCAT
CCGTATCCCCAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTGG
GCCACCGGAGTCACCCTGGCAGGCATCCTTGCCGCTGGCAGCAGCGCAGA
TCATGGTGTTGCGGATCTGGCTACCGTATCCGTAGGTGGAGGAAGCACAC
TGGCTCTGGCTAACGATGTTCACGTTCACGTACTGCAGCTGGGAGGGGAT
GGAGCTGGATCCGGACGACTGGGTACCCCAACCGGAAACGGCGGCAGAGG
CTCCGTTAGCTGGGTTGTAAGTGGCCAGGCTAATAGCCTTGATGCTTGAG
CTGAAGCTCAGGGAAGAGCTCAGACGGATGACAGCGATGTCGTTGACCAT
GGTGTTAGCGTTGTATCCCTCGTGGTTCTTGAAAGAGGAAACCTTGGCGA
CGACGCCACCAGAGCTCCAGTAGGTGGATCCAGCACGGACCTGCAGGACT
GAAGCGGACACGGACTGCAGACAGTGAGCGGCGGTCACAATGATGTTGGC
AGAGTAGATGGATCCACCGCAGGAGTGGCTGCCACTGCGCTGCAGGGAGA
TCTGCCAGGGGAAGCTGCTGATGGTGGTAGCAGAGCCGCCGACAATGCGG
CCATCCAACTGAGGCAGGAGTCCCTCAGGGACGGTGCCTCCCAGGGCGCA
GACCACGGCGGACAAGAGGATCACGATCTTCAACATGTCGACTGATAACT
BO12495.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18444-PA | 771 | alphaTry-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 474..747 | 313..40 | 1295 | 98.9 | Minus |
CG12351-PA | 762 | deltaTry-RA | 474..746 | 313..41 | 1290 | 98.9 | Minus |
CG30031-PA | 762 | CG30031-RA | 474..746 | 313..41 | 1290 | 98.9 | Minus |
CG30028-PA | 762 | gammaTry-RA | 474..746 | 313..41 | 1290 | 98.9 | Minus |
CG30025-PA | 762 | CG30025-RA | 36..185 | 751..602 | 725 | 99.3 | Minus |
CG12351-PA | 762 | deltaTry-RA | 36..185 | 751..602 | 725 | 99.3 | Minus |
CG30031-PA | 762 | CG30031-RA | 36..185 | 751..602 | 725 | 99.3 | Minus |
CG30028-PA | 762 | gammaTry-RA | 36..185 | 751..602 | 725 | 99.3 | Minus |
CG18211-PA | 762 | betaTry-RA | 36..185 | 751..602 | 600 | 96 | Minus |
CG18211-PA | 762 | betaTry-RA | 240..401 | 547..386 | 485 | 91.9 | Minus |
CG18211-PA | 762 | betaTry-RA | 616..689 | 171..98 | 370 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 199..275 | 588..512 | 310 | 96.1 | Minus |
CG12351-PA | 762 | deltaTry-RA | 199..275 | 588..512 | 310 | 96.1 | Minus |
CG30031-PA | 762 | CG30031-RA | 199..275 | 588..512 | 310 | 96.1 | Minus |
CG30028-PA | 762 | gammaTry-RA | 199..275 | 588..512 | 310 | 96.1 | Minus |
CG18681-PA | 771 | epsilonTry-RA | 606..650 | 181..137 | 200 | 97.7 | Minus |
CG30025-PA | 762 | CG30025-RA | 298..350 | 489..437 | 190 | 94.3 | Minus |
CG12351-PA | 762 | deltaTry-RA | 298..350 | 489..437 | 190 | 94.3 | Minus |
CG30031-PA | 762 | CG30031-RA | 298..350 | 489..437 | 190 | 94.3 | Minus |
CG30028-PA | 762 | gammaTry-RA | 298..350 | 489..437 | 190 | 94.3 | Minus |
CG18211-PA | 762 | betaTry-RA | 700..747 | 87..40 | 190 | 95.8 | Minus |
CG18211-PA | 762 | betaTry-RA | 199..233 | 588..554 | 150 | 97.1 | Minus |
CG7754-PA | 759 | iotaTry-RA | 687..713 | 88..62 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-RA | 860 | CG18444-RA | 27..795 | 787..19 | 3845 | 100 | Minus |
CG30025-RA | 810 | CG30025-RA | 14..761 | 787..40 | 2645 | 90.2 | Minus |
gammaTry-RA | 810 | CG30028-RA | 15..761 | 787..41 | 2640 | 90.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11344325..11345093 | 19..787 | 3845 | 100 | Plus |
2R | 25286936 | 2R | 11353613..11354360 | 40..787 | 2645 | 90.2 | Plus |
2R | 25286936 | 2R | 11349110..11349856 | 41..787 | 2640 | 90.2 | Plus |
2R | 25286936 | 2R | 11350826..11351572 | 787..41 | 2640 | 90.2 | Minus |
2R | 25286936 | 2R | 11355332..11356078 | 787..41 | 2640 | 90.2 | Minus |
2R | 25286936 | 2R | 11346341..11347088 | 787..40 | 2390 | 88 | Minus |
2R | 25286936 | 2R | 11345320..11345442 | 59..181 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11345694..11346016 | 433..755 | 250 | 71.8 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:09:44 has no hits.
BO12495.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:27 Download gff for
BO12495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18444-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:48 Download gff for
BO12495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18444-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:43:25 Download gff for
BO12495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 27..805 | 7..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:26:19 Download gff for
BO12495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 27..805 | 7..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:26:19 Download gff for
BO12495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11344315..11345093 | 7..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:43:25 Download gff for
BO12495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7231820..7232598 | 7..787 | 99 | | Plus |
BO12495.5prime Sequence
772 bp (771 high quality bases) assembled on 2006-05-08
> BO12495.5prime
GAAGTTATCAGCCTACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGG
TCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CTGCCAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCAGTCCTGCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACA
CCATGGTCAACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTC
AGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGG
AGCCTCTGCCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCT
CCGCTCTTGGGTGGTGAGCACT
BO12495.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18444-PA | 771 | alphaTry-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 474..747 | 490..763 | 1295 | 98.9 | Plus |
CG12351-PA | 762 | deltaTry-RA | 474..746 | 490..762 | 1290 | 98.9 | Plus |
CG30031-PA | 762 | CG30031-RA | 474..746 | 490..762 | 1290 | 98.9 | Plus |
CG30028-PA | 762 | gammaTry-RA | 474..746 | 490..762 | 1290 | 98.9 | Plus |
CG30025-PA | 762 | CG30025-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG12351-PA | 762 | deltaTry-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG30031-PA | 762 | CG30031-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG30028-PA | 762 | gammaTry-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG18211-PA | 762 | betaTry-RA | 36..185 | 52..201 | 600 | 96 | Plus |
CG18211-PA | 762 | betaTry-RA | 240..401 | 256..417 | 485 | 91.9 | Plus |
CG18211-PA | 762 | betaTry-RA | 616..689 | 632..705 | 370 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG12351-PA | 762 | deltaTry-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG30031-PA | 762 | CG30031-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG30028-PA | 762 | gammaTry-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG18681-PA | 771 | epsilonTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG30025-PA | 762 | CG30025-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG12351-PA | 762 | deltaTry-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG30031-PA | 762 | CG30031-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG30028-PA | 762 | gammaTry-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG18211-PA | 762 | betaTry-RA | 700..747 | 716..763 | 190 | 95.8 | Plus |
CG18211-PA | 762 | betaTry-RA | 199..233 | 215..249 | 150 | 97.1 | Plus |
CG7754-PA | 759 | iotaTry-RA | 687..713 | 715..741 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-RA | 860 | CG18444-RA | 27..783 | 16..772 | 3785 | 100 | Plus |
CG30025-RA | 810 | CG30025-RA | 14..761 | 16..763 | 2645 | 90.2 | Plus |
gammaTry-RA | 810 | CG30028-RA | 15..761 | 16..762 | 2640 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11344337..11345093 | 772..16 | 3785 | 100 | Minus |
2R | 25286936 | 2R | 11353613..11354360 | 763..16 | 2645 | 90.2 | Minus |
2R | 25286936 | 2R | 11349110..11349856 | 762..16 | 2640 | 90.2 | Minus |
2R | 25286936 | 2R | 11350826..11351572 | 16..762 | 2640 | 90.2 | Plus |
2R | 25286936 | 2R | 11355332..11356078 | 16..762 | 2640 | 90.2 | Plus |
2R | 25286936 | 2R | 11346341..11347088 | 16..763 | 2390 | 88 | Plus |
2R | 25286936 | 2R | 11345320..11345442 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11345694..11346016 | 370..48 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:49:21 has no hits.
BO12495.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:28 Download gff for
BO12495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18444-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:50 Download gff for
BO12495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18444-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:38 Download gff for
BO12495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 12..783 | 4..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:26:05 Download gff for
BO12495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 12..783 | 4..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:26:05 Download gff for
BO12495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11344337..11345108 | 4..772 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:38 Download gff for
BO12495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7231842..7232613 | 4..772 | 99 | | Minus |
BO12495.complete Sequence
802 bp assembled on 2006-10-11
GenBank Submission: FJ632456
> BO12495.complete
GAAGTTATCAGTCGACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGG
TCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CTGCCAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCAGTCCTGCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACA
CCATGGTCAACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTC
AGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGG
AGCCTCTGCCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCT
CCGCTCTTGGGTGGTGAGCACTGCTAACAGCATCGCAAGCTTTCTAGACC
AT
BO12495.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-RA | 771 | CG18444-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG30025-RA | 762 | CG30025-PA | 1..747 | 17..763 | 2640 | 90.2 | Plus |
gammaTry-RA | 762 | CG30028-PA | 1..746 | 17..762 | 2635 | 90.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-RA | 860 | CG18444-RA | 27..795 | 16..784 | 3845 | 100 | Plus |
CG30025-RA | 810 | CG30025-RA | 14..761 | 16..763 | 2645 | 90.2 | Plus |
gammaTry-RA | 810 | CG30028-RA | 15..761 | 16..762 | 2640 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11344325..11345093 | 784..16 | 3845 | 100 | Minus |
2R | 25286936 | 2R | 11353613..11354360 | 763..16 | 2645 | 90.2 | Minus |
2R | 25286936 | 2R | 11349110..11349856 | 762..16 | 2640 | 90.2 | Minus |
2R | 25286936 | 2R | 11350826..11351572 | 16..762 | 2640 | 90.2 | Plus |
2R | 25286936 | 2R | 11355332..11356078 | 16..762 | 2640 | 90.2 | Plus |
2R | 25286936 | 2R | 11346341..11347088 | 16..763 | 2390 | 88 | Plus |
2R | 25286936 | 2R | 11345320..11345442 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11345694..11346016 | 370..48 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:15:18 has no hits.
BO12495.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:01 Download gff for
BO12495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:16 Download gff for
BO12495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 23..801 | 16..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:54 Download gff for
BO12495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 33..795 | 22..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:02 Download gff for
BO12495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 23..801 | 16..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:40 Download gff for
BO12495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 33..795 | 22..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:40 Download gff for
BO12495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11344323..11345087 | 22..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:54 Download gff for
BO12495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7231828..7232592 | 22..786 | 99 | | Minus |
BO12495.pep Sequence
Translation from 16 to 802
> BO12495.pep
MLKIVILLSAVVCALGGTVPEGLLPQLDGRIVGGSATTISSFPWQISLQR
SGSHSCGGSIYSANIIVTAAHCLQSVSASVLQVRAGSTYWSSGGVVAKVS
SFKNHEGYNANTMVNDIAVIRLSSSLSFSSSIKAISLATYNPANGASAAV
SGWGTQSSGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRNTMICAAA
SGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAVLRSWVV
STANSIASFLDH
BO12495.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-PA | 256 | CG18444-PA | 1..256 | 1..256 | 1297 | 100 | Plus |
gammaTry-PA | 253 | CG30028-PA | 1..253 | 1..253 | 1178 | 88.9 | Plus |
deltaTry-PA | 253 | CG12351-PA | 1..253 | 1..253 | 1178 | 88.9 | Plus |
CG30031-PA | 253 | CG30031-PA | 1..253 | 1..253 | 1178 | 88.9 | Plus |
CG30025-PA | 253 | CG30025-PA | 1..253 | 1..253 | 1175 | 88.5 | Plus |