Clone BO12495 Report

Search the DGRC for BO12495

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptalphaTry-RA
Protein status:BO12495.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO12495.3prime Sequence

800 bp (799 high quality bases) assembled on 2006-05-08

> BO12495.3prime
ATGGTCTAGAAAGCTTGCGATGCTGTTAGCAGTGCTCACCACCCAAGAGC
GGAGGACAGCAACATCGGCATAGACACCGGGGTAGTTGGAGTAAGCGCAT
CCGTATCCCCAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTGG
GCCACCGGAGTCACCCTGGCAGGCATCCTTGCCGCTGGCAGCAGCGCAGA
TCATGGTGTTGCGGATCTGGCTACCGTATCCGTAGGTGGAGGAAGCACAC
TGGCTCTGGCTAACGATGTTCACGTTCACGTACTGCAGCTGGGAGGGGAT
GGAGCTGGATCCGGACGACTGGGTACCCCAACCGGAAACGGCGGCAGAGG
CTCCGTTAGCTGGGTTGTAAGTGGCCAGGCTAATAGCCTTGATGCTTGAG
CTGAAGCTCAGGGAAGAGCTCAGACGGATGACAGCGATGTCGTTGACCAT
GGTGTTAGCGTTGTATCCCTCGTGGTTCTTGAAAGAGGAAACCTTGGCGA
CGACGCCACCAGAGCTCCAGTAGGTGGATCCAGCACGGACCTGCAGGACT
GAAGCGGACACGGACTGCAGACAGTGAGCGGCGGTCACAATGATGTTGGC
AGAGTAGATGGATCCACCGCAGGAGTGGCTGCCACTGCGCTGCAGGGAGA
TCTGCCAGGGGAAGCTGCTGATGGTGGTAGCAGAGCCGCCGACAATGCGG
CCATCCAACTGAGGCAGGAGTCCCTCAGGGACGGTGCCTCCCAGGGCGCA
GACCACGGCGGACAAGAGGATCACGATCTTCAACATGTCGACTGATAACT

BO12495.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG18444-PA 771 alphaTry-RA 1..768 786..19 3840 100 Minus
CG30025-PA 762 CG30025-RA 474..747 313..40 1295 98.9 Minus
CG12351-PA 762 deltaTry-RA 474..746 313..41 1290 98.9 Minus
CG30031-PA 762 CG30031-RA 474..746 313..41 1290 98.9 Minus
CG30028-PA 762 gammaTry-RA 474..746 313..41 1290 98.9 Minus
CG30025-PA 762 CG30025-RA 36..185 751..602 725 99.3 Minus
CG12351-PA 762 deltaTry-RA 36..185 751..602 725 99.3 Minus
CG30031-PA 762 CG30031-RA 36..185 751..602 725 99.3 Minus
CG30028-PA 762 gammaTry-RA 36..185 751..602 725 99.3 Minus
CG18211-PA 762 betaTry-RA 36..185 751..602 600 96 Minus
CG18211-PA 762 betaTry-RA 240..401 547..386 485 91.9 Minus
CG18211-PA 762 betaTry-RA 616..689 171..98 370 100 Minus
CG30025-PA 762 CG30025-RA 199..275 588..512 310 96.1 Minus
CG12351-PA 762 deltaTry-RA 199..275 588..512 310 96.1 Minus
CG30031-PA 762 CG30031-RA 199..275 588..512 310 96.1 Minus
CG30028-PA 762 gammaTry-RA 199..275 588..512 310 96.1 Minus
CG18681-PA 771 epsilonTry-RA 606..650 181..137 200 97.7 Minus
CG30025-PA 762 CG30025-RA 298..350 489..437 190 94.3 Minus
CG12351-PA 762 deltaTry-RA 298..350 489..437 190 94.3 Minus
CG30031-PA 762 CG30031-RA 298..350 489..437 190 94.3 Minus
CG30028-PA 762 gammaTry-RA 298..350 489..437 190 94.3 Minus
CG18211-PA 762 betaTry-RA 700..747 87..40 190 95.8 Minus
CG18211-PA 762 betaTry-RA 199..233 588..554 150 97.1 Minus
CG7754-PA 759 iotaTry-RA 687..713 88..62 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-RA 860 CG18444-RA 27..795 787..19 3845 100 Minus
CG30025-RA 810 CG30025-RA 14..761 787..40 2645 90.2 Minus
gammaTry-RA 810 CG30028-RA 15..761 787..41 2640 90.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11344325..11345093 19..787 3845 100 Plus
2R 25286936 2R 11353613..11354360 40..787 2645 90.2 Plus
2R 25286936 2R 11349110..11349856 41..787 2640 90.2 Plus
2R 25286936 2R 11350826..11351572 787..41 2640 90.2 Minus
2R 25286936 2R 11355332..11356078 787..41 2640 90.2 Minus
2R 25286936 2R 11346341..11347088 787..40 2390 88 Minus
2R 25286936 2R 11345320..11345442 59..181 300 82.9 Plus
2R 25286936 2R 11345694..11346016 433..755 250 71.8 Plus
Blast to na_te.dros performed on 2015-02-08 13:09:44 has no hits.

BO12495.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:27 Download gff for BO12495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18444-PA 1..771 15..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:48 Download gff for BO12495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18444-PA 1..771 15..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:43:25 Download gff for BO12495.3prime
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 27..805 7..787 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:26:19 Download gff for BO12495.3prime
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 27..805 7..787 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:26:19 Download gff for BO12495.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11344315..11345093 7..787 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:43:25 Download gff for BO12495.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7231820..7232598 7..787 99   Plus

BO12495.5prime Sequence

772 bp (771 high quality bases) assembled on 2006-05-08

> BO12495.5prime
GAAGTTATCAGCCTACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGG
TCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CTGCCAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCAGTCCTGCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACA
CCATGGTCAACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTC
AGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGG
AGCCTCTGCCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCT
CCGCTCTTGGGTGGTGAGCACT

BO12495.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18444-PA 771 alphaTry-RA 1..756 17..772 3780 100 Plus
CG30025-PA 762 CG30025-RA 474..747 490..763 1295 98.9 Plus
CG12351-PA 762 deltaTry-RA 474..746 490..762 1290 98.9 Plus
CG30031-PA 762 CG30031-RA 474..746 490..762 1290 98.9 Plus
CG30028-PA 762 gammaTry-RA 474..746 490..762 1290 98.9 Plus
CG30025-PA 762 CG30025-RA 36..185 52..201 725 99.3 Plus
CG12351-PA 762 deltaTry-RA 36..185 52..201 725 99.3 Plus
CG30031-PA 762 CG30031-RA 36..185 52..201 725 99.3 Plus
CG30028-PA 762 gammaTry-RA 36..185 52..201 725 99.3 Plus
CG18211-PA 762 betaTry-RA 36..185 52..201 600 96 Plus
CG18211-PA 762 betaTry-RA 240..401 256..417 485 91.9 Plus
CG18211-PA 762 betaTry-RA 616..689 632..705 370 100 Plus
CG30025-PA 762 CG30025-RA 199..275 215..291 310 96.1 Plus
CG12351-PA 762 deltaTry-RA 199..275 215..291 310 96.1 Plus
CG30031-PA 762 CG30031-RA 199..275 215..291 310 96.1 Plus
CG30028-PA 762 gammaTry-RA 199..275 215..291 310 96.1 Plus
CG18681-PA 771 epsilonTry-RA 606..650 622..666 200 97.7 Plus
CG30025-PA 762 CG30025-RA 298..350 314..366 190 94.3 Plus
CG12351-PA 762 deltaTry-RA 298..350 314..366 190 94.3 Plus
CG30031-PA 762 CG30031-RA 298..350 314..366 190 94.3 Plus
CG30028-PA 762 gammaTry-RA 298..350 314..366 190 94.3 Plus
CG18211-PA 762 betaTry-RA 700..747 716..763 190 95.8 Plus
CG18211-PA 762 betaTry-RA 199..233 215..249 150 97.1 Plus
CG7754-PA 759 iotaTry-RA 687..713 715..741 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-RA 860 CG18444-RA 27..783 16..772 3785 100 Plus
CG30025-RA 810 CG30025-RA 14..761 16..763 2645 90.2 Plus
gammaTry-RA 810 CG30028-RA 15..761 16..762 2640 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11344337..11345093 772..16 3785 100 Minus
2R 25286936 2R 11353613..11354360 763..16 2645 90.2 Minus
2R 25286936 2R 11349110..11349856 762..16 2640 90.2 Minus
2R 25286936 2R 11350826..11351572 16..762 2640 90.2 Plus
2R 25286936 2R 11355332..11356078 16..762 2640 90.2 Plus
2R 25286936 2R 11346341..11347088 16..763 2390 88 Plus
2R 25286936 2R 11345320..11345442 744..622 300 82.9 Minus
2R 25286936 2R 11345694..11346016 370..48 250 71.8 Minus
Blast to na_te.dros performed on 2015-02-02 10:49:21 has no hits.

BO12495.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:28 Download gff for BO12495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18444-PA 1..756 17..772 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:50 Download gff for BO12495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18444-PA 1..756 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:38 Download gff for BO12495.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 12..783 4..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:26:05 Download gff for BO12495.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 12..783 4..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:26:05 Download gff for BO12495.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11344337..11345108 4..772 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:38 Download gff for BO12495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7231842..7232613 4..772 99   Minus

BO12495.complete Sequence

802 bp assembled on 2006-10-11

GenBank Submission: FJ632456

> BO12495.complete
GAAGTTATCAGTCGACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGG
TCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CTGCCAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCAGTCCTGCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACA
CCATGGTCAACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTC
AGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGG
AGCCTCTGCCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCT
CCGCTCTTGGGTGGTGAGCACTGCTAACAGCATCGCAAGCTTTCTAGACC
AT

BO12495.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-RA 771 CG18444-PA 1..768 17..784 3840 100 Plus
CG30025-RA 762 CG30025-PA 1..747 17..763 2640 90.2 Plus
gammaTry-RA 762 CG30028-PA 1..746 17..762 2635 90.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-RA 860 CG18444-RA 27..795 16..784 3845 100 Plus
CG30025-RA 810 CG30025-RA 14..761 16..763 2645 90.2 Plus
gammaTry-RA 810 CG30028-RA 15..761 16..762 2640 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11344325..11345093 784..16 3845 100 Minus
2R 25286936 2R 11353613..11354360 763..16 2645 90.2 Minus
2R 25286936 2R 11349110..11349856 762..16 2640 90.2 Minus
2R 25286936 2R 11350826..11351572 16..762 2640 90.2 Plus
2R 25286936 2R 11355332..11356078 16..762 2640 90.2 Plus
2R 25286936 2R 11346341..11347088 16..763 2390 88 Plus
2R 25286936 2R 11345320..11345442 744..622 300 82.9 Minus
2R 25286936 2R 11345694..11346016 370..48 250 71.8 Minus
Blast to na_te.dros performed on 2014-11-28 00:15:18 has no hits.

BO12495.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:01 Download gff for BO12495.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:16 Download gff for BO12495.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 23..801 16..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:54 Download gff for BO12495.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 33..795 22..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:02 Download gff for BO12495.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 23..801 16..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:40 Download gff for BO12495.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 33..795 22..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:40 Download gff for BO12495.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11344323..11345087 22..786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:54 Download gff for BO12495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7231828..7232592 22..786 99   Minus

BO12495.pep Sequence

Translation from 16 to 802

> BO12495.pep
MLKIVILLSAVVCALGGTVPEGLLPQLDGRIVGGSATTISSFPWQISLQR
SGSHSCGGSIYSANIIVTAAHCLQSVSASVLQVRAGSTYWSSGGVVAKVS
SFKNHEGYNANTMVNDIAVIRLSSSLSFSSSIKAISLATYNPANGASAAV
SGWGTQSSGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRNTMICAAA
SGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAVLRSWVV
STANSIASFLDH

BO12495.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-PA 256 CG18444-PA 1..256 1..256 1297 100 Plus
gammaTry-PA 253 CG30028-PA 1..253 1..253 1178 88.9 Plus
deltaTry-PA 253 CG12351-PA 1..253 1..253 1178 88.9 Plus
CG30031-PA 253 CG30031-PA 1..253 1..253 1178 88.9 Plus
CG30025-PA 253 CG30025-PA 1..253 1..253 1175 88.5 Plus