Clone Sequence Records
BO12503.3prime Sequence
942 bp (796 high quality bases) assembled on 2006-05-08
> BO12503.3prime
ATGGTCTAGAAAGCTTGCGGCCAGTCGAATACCCCTCTTTAGCAATTCGT
GAACCAGCTTGGTGGCCAGAAACATGTAGACCAGCAGAATGATGACGGAC
TCGGAATGAGAGCGATCCTCTGGCCTGAGAAAGATGTTCACCATGCCGGT
CAGAATGTTGGCCACCAGGAAGAATGTCAATCCATTTTTGTTCAGAGCCT
GGCTAATCGTGAACGGAACAACGGATCCGCCCCTTTTCTTGACCACAGCC
TCCCCCGATAGAAGACCCTTCTCATGATCCTCCCACGGATTCGGATCCCA
CGGCATGACGCTGTTGATCGCAAAGTCTATGGCTCCGAAACTGGCACACA
AAGTGGTGCTCCCGATGGCCAGCATCCATATGACATAGCCCAGATTGCAG
GTCACCCGGGAGATACCAATTTCGTAGGCACTGATGACGAACGAGGTCCA
CAGGATAAGCACCAGATAGAACAGACGCCTCAGCTTCCTGACAAACTCGG
AGTAGGTGAGCAGACTTTTCGCCACCATCCAACGGTTGACGTAAATGGAC
AGCAGGAACAGTCCAACGAATCCTGGCAAGGAAACCAGACCTTCGCGATT
TGCATTAAGGAAACTCGAGCGCTCCACATCCTCGTTCATCACATAGTCGG
AGATGCCCAGGACACTCAGGCCAAACTGGTGGATCACCAACAAACCGAAT
CCCAATGGCAGCAAATGGAGATCCTTGCGGGCCAGAATGCTGACCAGAGA
GCCCAGGAACTTGGTGAAGCCCAGGGTAAAGAAGGCATTCAGATGCTGGC
CGTACTCATGGGCATCCTGCCCGTAACTCAAAGTCAAAATGACACCGTGC
GCGCCAGTCCCAGCAGGATGAGCGGCAGGGCAGAGTAGATCACACTCCGG
CGGAGATCTGACCAGTGACGCGTTCTCCGCGACACCATGGCC
BO12503.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18173-PA | 1515 | CG18173-RA | 691..1512 | 840..19 | 4085 | 99.8 | Minus |
CG18173-PA | 1515 | CG18173-RA | 588..690 | 942..840 | 515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18173-RB | 2200 | CG18173-RB | 895..1819 | 942..19 | 4585 | 99.8 | Minus |
CG18173-RA | 1916 | CG18173-RA | 611..1535 | 942..19 | 4585 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1736234..1736911 | 19..696 | 3390 | 100 | Plus |
3L | 28110227 | 3L | 1736963..1737212 | 694..942 | 1185 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:02:29 has no hits.
BO12503.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:35 Download gff for
BO12503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-PA | 588..1515 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:00 Download gff for
BO12503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-PA | 588..1515 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:26 Download gff for
BO12503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 611..1535 | 19..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:35 Download gff for
BO12503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 611..1535 | 19..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:35 Download gff for
BO12503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1736234..1736910 | 19..695 | 100 | <- | Plus |
3L | 1736965..1737212 | 696..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:26 Download gff for
BO12503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1736965..1737212 | 696..942 | 99 | | Plus |
arm_3L | 1736234..1736910 | 19..695 | 100 | <- | Plus |
BO12503.5prime Sequence
885 bp (842 high quality bases) assembled on 2006-05-08
> BO12503.5prime
GAAGTTATCAGTCGACATGGACAGTCGAGCGGCAGCAGAACCCATTCCCC
ATGTGAGCCCGAGTCCATTTCCGAATCCGAGTGCGGTCAACCAAACCCTC
GAGGAGCGCCTGGGATTGGATCTAGTACAAGTCTACGACTGGGACTGGTG
GGGAACCCTGGTCCAGAGCGGCGAATCCCTCCTGCTAATCCTGTCCACCT
TGTGGTGCATTTTGCTCGCTCGAGTGGTTTGCCAAAAGCTGAGGCTTCAT
GGCTCTGCCGACCTCTGCTATGCCACGGAGTTCCTCCTGGTCATCCTGCC
CTGCATTCTGCTCGTCTCCGTGGCCGTGGACTACAGTGGCTACATAGGAC
TGCTAATGCTCGTGGCCACCTTGTGGTTTCTGCGCACGAGCAGGGCTCTG
GAACGGGCTCGCACCCGCGTTCAGTTCGACTTGGGCGGCAATAGGCCCAT
GTGCTTGTCCATCCTCCGTGCGCTGACCCACTTGATCACCGCCGTCTGCA
TTCTGGCCATCGACTTTGGCAGTTTCTATAGGCCATACCGCAAGAGCAGG
CAGTTCGGAGCCAAGCTCATGGACACCGGCATCGGTCTGTTTGTTTTCAC
CATGGCCATGGTGTCGCGGAGAACGCGTCACTGGTCAGATCTCCGCCGGA
GTGTGATCTACTCTGCCCTGCCGCTCATCCTGCTGGGACTGGCGCGCACG
GTGTCAATTTTGACTCTGAGTTACGGGCAGGATGCCCATGAGTACGGCCA
GCATCTGAATGCCTTCTTTACCCTGGGCTTCACCAAGTTCCTGGGCTCTC
TGGTCAGCATTCTGGCCCCGCAGGATCTCCATTTGCTGCCATTGGGATTC
GGTTTGTTGGTGATCCACCCAGTTTGGCCTGAGTG
BO12503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18173-PA | 1515 | CG18173-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
CG18173-PA | 1515 | CG18173-RA | 806..853 | 822..869 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18173-RB | 2200 | CG18173-RB | 300..1175 | 9..885 | 4300 | 99.5 | Plus |
CG18173-RA | 1916 | CG18173-RA | 16..891 | 9..885 | 4300 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1736963..1737807 | 853..9 | 4165 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:17:42 has no hits.
BO12503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:36 Download gff for
BO12503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-PA | 1..868 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:01 Download gff for
BO12503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-PA | 1..868 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:36 Download gff for
BO12503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 16..891 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:44 Download gff for
BO12503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 16..891 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:44 Download gff for
BO12503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1736878..1736910 | 852..885 | 97 | <- | Minus |
3L | 1736965..1737807 | 9..851 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:36 Download gff for
BO12503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1736878..1736910 | 852..885 | 97 | <- | Minus |
arm_3L | 1736965..1737807 | 9..851 | 99 | | Minus |
BO12503.complete Sequence
1546 bp assembled on 2006-10-11
GenBank Submission: FJ632457
> BO12503.complete
GAAGTTATCAGTCGACATGGACAGTCGAGCGGCAGCAGAACCCATTCCCC
ATGTGAGCCCGAGTCCATTTCCGAATCCGAGTGCGGTCAACCAAACCCTC
GAGGAGCGCCTGGGATTGGATCTAGTACAAGTCTACGACTGGGACTGGTG
GGGAACCCTGGTCCAGAGCGGCGAATCCCTCCTGCTAATCCTGTCCACCT
TGTGGTGCATTTTGCTCGCTCGAGTGGTTTGCCAAAAGCTGAGGCTTCAT
GGCTCTGCCGACCTCTGCTATGCCACGGAGTTCCTCCTGGTCATCCTGCC
CTGCATTCTGCTCGTCTCCGTGGCCGTGGACTACAGTGGCTACATAGGAC
TGCTAATGCTCGTGGCCACCTTGTGGTTTCTGCGCACGAGCAGGGCTCTG
GAACGGGCTCGCACCCGCGTTCAGTTCGACTTGGGCGGCAATAGGCCCAT
GTGCTTGTCCATCCTCCGTGCGCTGACCCACTTGATCACCGCCGTCTGCA
TTCTGGCCATCGACTTTGGCAGTTTCTATAGGCCATACCGCAAGAGCAGG
CAGTTCGGAGCCAAGCTCATGGACACCGGCATCGGTCTGTTTGTTTTCAC
CATGGCCATGGTGTCGCGGAGAACGCGTCACTGGTCAGATCTCCGCCGGA
GTGTGATCTACTCTGCCCTGCCGCTCATCCTGCTGGGACTGGCGCGCACG
GTGTCAATTTTGACTCTGAGTTACGGGCAGGATGCCCATGAGTACGGCCA
GCATCTGAATGCCTTCTTTACCCTGGGCTTCACCAAGTTCCTGGGCTCTC
TGGTCAGCATTCTGGCCCGCAAGGATCTCCATTTGCTGCCATTGGGATTC
GGTTTGTTGGTGATCCACCAGTTTGGCCTGAGTGTCCTGGGCATCTCCGA
CTATGTGATGAACGAGGATGTGGAGCGCTCGAGTTTCCTTAATGCAAATC
GCGAAGGTCTGGTTTCCTTGCCAGGATTCGTTGGACTGTTCCTGCTGTCC
ATTTACGTCAACCGTTGGATGGTGGCGAAAAGTCTGCTCACCTACTCCGA
GTTTGTCAGGAAGCTGAGGCGTCTGTTCTATCTGGTGCTTATCCTGTGGA
CCTCGTTCGTCATCAGTGCCTACGAAATTGGTATCTCCCGGGTGACCTGC
AATCTGGGCTATGTCATATGGATGCTGGCCATCGGGAGCACCACTTTGTG
TGCCAGTTTCGGAGCCATAGACTTTGCGATCAACAGCGTCATGCCGTGGG
ATCCGAATCCGTGGGAGGATCATGAGAAGGGTCTTCTATCGGGGGAGGCT
GTGGTCAAGAAAAGGGGCGGATCCGTTGTTCCGTTCACGATTAGCCAGGC
TCTGAACAAAAATGGATTGACATTCTTCCTGGTGGCCAACATTCTGACCG
GCATGGTGAACATCTTTCTCAGGCCAGAGGATCGCTCTCATTCCGAGTCC
GTCATCATTCTGCTGGTCTACATGTTTCTGGCCACCAAGCTGGTTCACGA
ATTGCTAAAGAGGGGTATTCGACTGGCCGCAAGCTTTCTAGACCAT
BO12503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18173-RB | 1515 | CG18173-PB | 1..1512 | 17..1528 | 7560 | 100 | Plus |
CG18173-RA | 1515 | CG18173-PA | 1..1512 | 17..1528 | 7560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18173-RB | 2200 | CG18173-RB | 300..1819 | 9..1528 | 7585 | 99.9 | Plus |
CG18173-RA | 1916 | CG18173-RA | 16..1535 | 9..1528 | 7585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1736963..1737807 | 853..9 | 4210 | 99.9 | Minus |
3L | 28110227 | 3L | 1736234..1736911 | 1528..851 | 3390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:04:26 has no hits.
BO12503.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:02 Download gff for
BO12503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 1..1515 | 17..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:18 Download gff for
BO12503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 1..1519 | 10..1528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:01 Download gff for
BO12503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 24..1535 | 17..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:03 Download gff for
BO12503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 1..1519 | 10..1528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:01 Download gff for
BO12503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18173-RA | 24..1535 | 17..1530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:01 Download gff for
BO12503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1736231..1736910 | 852..1530 | 99 | <- | Minus |
3L | 1736965..1737799 | 17..851 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:01 Download gff for
BO12503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1736231..1736910 | 852..1530 | 99 | <- | Minus |
arm_3L | 1736965..1737799 | 17..851 | 100 | | Minus |
BO12503.pep Sequence
Translation from 16 to 1546
> BO12503.pep
MDSRAAAEPIPHVSPSPFPNPSAVNQTLEERLGLDLVQVYDWDWWGTLVQ
SGESLLLILSTLWCILLARVVCQKLRLHGSADLCYATEFLLVILPCILLV
SVAVDYSGYIGLLMLVATLWFLRTSRALERARTRVQFDLGGNRPMCLSIL
RALTHLITAVCILAIDFGSFYRPYRKSRQFGAKLMDTGIGLFVFTMAMVS
RRTRHWSDLRRSVIYSALPLILLGLARTVSILTLSYGQDAHEYGQHLNAF
FTLGFTKFLGSLVSILARKDLHLLPLGFGLLVIHQFGLSVLGISDYVMNE
DVERSSFLNANREGLVSLPGFVGLFLLSIYVNRWMVAKSLLTYSEFVRKL
RRLFYLVLILWTSFVISAYEIGISRVTCNLGYVIWMLAIGSTTLCASFGA
IDFAINSVMPWDPNPWEDHEKGLLSGEAVVKKRGGSVVPFTISQALNKNG
LTFFLVANILTGMVNIFLRPEDRSHSESVIILLVYMFLATKLVHELLKRG
IRLAASFLDH
BO12503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18173-PB | 504 | CG18173-PB | 1..504 | 1..504 | 2579 | 100 | Plus |
CG18173-PA | 504 | CG18173-PA | 1..504 | 1..504 | 2579 | 100 | Plus |
CG9870-PA | 459 | CG9870-PA | 21..459 | 45..504 | 785 | 40.2 | Plus |