Clone BO12503 Report

Search the DGRC for BO12503

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG18173-RA
Protein status:BO12503.pep: validated full length
Sequenced Size:1546

Clone Sequence Records

BO12503.3prime Sequence

942 bp (796 high quality bases) assembled on 2006-05-08

> BO12503.3prime
ATGGTCTAGAAAGCTTGCGGCCAGTCGAATACCCCTCTTTAGCAATTCGT
GAACCAGCTTGGTGGCCAGAAACATGTAGACCAGCAGAATGATGACGGAC
TCGGAATGAGAGCGATCCTCTGGCCTGAGAAAGATGTTCACCATGCCGGT
CAGAATGTTGGCCACCAGGAAGAATGTCAATCCATTTTTGTTCAGAGCCT
GGCTAATCGTGAACGGAACAACGGATCCGCCCCTTTTCTTGACCACAGCC
TCCCCCGATAGAAGACCCTTCTCATGATCCTCCCACGGATTCGGATCCCA
CGGCATGACGCTGTTGATCGCAAAGTCTATGGCTCCGAAACTGGCACACA
AAGTGGTGCTCCCGATGGCCAGCATCCATATGACATAGCCCAGATTGCAG
GTCACCCGGGAGATACCAATTTCGTAGGCACTGATGACGAACGAGGTCCA
CAGGATAAGCACCAGATAGAACAGACGCCTCAGCTTCCTGACAAACTCGG
AGTAGGTGAGCAGACTTTTCGCCACCATCCAACGGTTGACGTAAATGGAC
AGCAGGAACAGTCCAACGAATCCTGGCAAGGAAACCAGACCTTCGCGATT
TGCATTAAGGAAACTCGAGCGCTCCACATCCTCGTTCATCACATAGTCGG
AGATGCCCAGGACACTCAGGCCAAACTGGTGGATCACCAACAAACCGAAT
CCCAATGGCAGCAAATGGAGATCCTTGCGGGCCAGAATGCTGACCAGAGA
GCCCAGGAACTTGGTGAAGCCCAGGGTAAAGAAGGCATTCAGATGCTGGC
CGTACTCATGGGCATCCTGCCCGTAACTCAAAGTCAAAATGACACCGTGC
GCGCCAGTCCCAGCAGGATGAGCGGCAGGGCAGAGTAGATCACACTCCGG
CGGAGATCTGACCAGTGACGCGTTCTCCGCGACACCATGGCC

BO12503.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-PA 1515 CG18173-RA 691..1512 840..19 4085 99.8 Minus
CG18173-PA 1515 CG18173-RA 588..690 942..840 515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-RB 2200 CG18173-RB 895..1819 942..19 4585 99.8 Minus
CG18173-RA 1916 CG18173-RA 611..1535 942..19 4585 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1736234..1736911 19..696 3390 100 Plus
3L 28110227 3L 1736963..1737212 694..942 1185 99.2 Plus
Blast to na_te.dros performed on 2015-02-08 13:02:29 has no hits.

BO12503.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:35 Download gff for BO12503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18173-PA 588..1515 16..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:00 Download gff for BO12503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18173-PA 588..1515 16..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:26 Download gff for BO12503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 611..1535 19..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:35 Download gff for BO12503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 611..1535 19..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:35 Download gff for BO12503.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1736234..1736910 19..695 100 <- Plus
3L 1736965..1737212 696..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:26 Download gff for BO12503.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1736965..1737212 696..942 99   Plus
arm_3L 1736234..1736910 19..695 100 <- Plus

BO12503.5prime Sequence

885 bp (842 high quality bases) assembled on 2006-05-08

> BO12503.5prime
GAAGTTATCAGTCGACATGGACAGTCGAGCGGCAGCAGAACCCATTCCCC
ATGTGAGCCCGAGTCCATTTCCGAATCCGAGTGCGGTCAACCAAACCCTC
GAGGAGCGCCTGGGATTGGATCTAGTACAAGTCTACGACTGGGACTGGTG
GGGAACCCTGGTCCAGAGCGGCGAATCCCTCCTGCTAATCCTGTCCACCT
TGTGGTGCATTTTGCTCGCTCGAGTGGTTTGCCAAAAGCTGAGGCTTCAT
GGCTCTGCCGACCTCTGCTATGCCACGGAGTTCCTCCTGGTCATCCTGCC
CTGCATTCTGCTCGTCTCCGTGGCCGTGGACTACAGTGGCTACATAGGAC
TGCTAATGCTCGTGGCCACCTTGTGGTTTCTGCGCACGAGCAGGGCTCTG
GAACGGGCTCGCACCCGCGTTCAGTTCGACTTGGGCGGCAATAGGCCCAT
GTGCTTGTCCATCCTCCGTGCGCTGACCCACTTGATCACCGCCGTCTGCA
TTCTGGCCATCGACTTTGGCAGTTTCTATAGGCCATACCGCAAGAGCAGG
CAGTTCGGAGCCAAGCTCATGGACACCGGCATCGGTCTGTTTGTTTTCAC
CATGGCCATGGTGTCGCGGAGAACGCGTCACTGGTCAGATCTCCGCCGGA
GTGTGATCTACTCTGCCCTGCCGCTCATCCTGCTGGGACTGGCGCGCACG
GTGTCAATTTTGACTCTGAGTTACGGGCAGGATGCCCATGAGTACGGCCA
GCATCTGAATGCCTTCTTTACCCTGGGCTTCACCAAGTTCCTGGGCTCTC
TGGTCAGCATTCTGGCCCCGCAGGATCTCCATTTGCTGCCATTGGGATTC
GGTTTGTTGGTGATCCACCCAGTTTGGCCTGAGTG

BO12503.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-PA 1515 CG18173-RA 1..802 17..818 4010 100 Plus
CG18173-PA 1515 CG18173-RA 806..853 822..869 240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-RB 2200 CG18173-RB 300..1175 9..885 4300 99.5 Plus
CG18173-RA 1916 CG18173-RA 16..891 9..885 4300 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1736963..1737807 853..9 4165 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 11:17:42 has no hits.

BO12503.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:36 Download gff for BO12503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18173-PA 1..868 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:01 Download gff for BO12503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18173-PA 1..868 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:36 Download gff for BO12503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 16..891 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:44 Download gff for BO12503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 16..891 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:44 Download gff for BO12503.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1736878..1736910 852..885 97 <- Minus
3L 1736965..1737807 9..851 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:36 Download gff for BO12503.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1736878..1736910 852..885 97 <- Minus
arm_3L 1736965..1737807 9..851 99   Minus

BO12503.complete Sequence

1546 bp assembled on 2006-10-11

GenBank Submission: FJ632457

> BO12503.complete
GAAGTTATCAGTCGACATGGACAGTCGAGCGGCAGCAGAACCCATTCCCC
ATGTGAGCCCGAGTCCATTTCCGAATCCGAGTGCGGTCAACCAAACCCTC
GAGGAGCGCCTGGGATTGGATCTAGTACAAGTCTACGACTGGGACTGGTG
GGGAACCCTGGTCCAGAGCGGCGAATCCCTCCTGCTAATCCTGTCCACCT
TGTGGTGCATTTTGCTCGCTCGAGTGGTTTGCCAAAAGCTGAGGCTTCAT
GGCTCTGCCGACCTCTGCTATGCCACGGAGTTCCTCCTGGTCATCCTGCC
CTGCATTCTGCTCGTCTCCGTGGCCGTGGACTACAGTGGCTACATAGGAC
TGCTAATGCTCGTGGCCACCTTGTGGTTTCTGCGCACGAGCAGGGCTCTG
GAACGGGCTCGCACCCGCGTTCAGTTCGACTTGGGCGGCAATAGGCCCAT
GTGCTTGTCCATCCTCCGTGCGCTGACCCACTTGATCACCGCCGTCTGCA
TTCTGGCCATCGACTTTGGCAGTTTCTATAGGCCATACCGCAAGAGCAGG
CAGTTCGGAGCCAAGCTCATGGACACCGGCATCGGTCTGTTTGTTTTCAC
CATGGCCATGGTGTCGCGGAGAACGCGTCACTGGTCAGATCTCCGCCGGA
GTGTGATCTACTCTGCCCTGCCGCTCATCCTGCTGGGACTGGCGCGCACG
GTGTCAATTTTGACTCTGAGTTACGGGCAGGATGCCCATGAGTACGGCCA
GCATCTGAATGCCTTCTTTACCCTGGGCTTCACCAAGTTCCTGGGCTCTC
TGGTCAGCATTCTGGCCCGCAAGGATCTCCATTTGCTGCCATTGGGATTC
GGTTTGTTGGTGATCCACCAGTTTGGCCTGAGTGTCCTGGGCATCTCCGA
CTATGTGATGAACGAGGATGTGGAGCGCTCGAGTTTCCTTAATGCAAATC
GCGAAGGTCTGGTTTCCTTGCCAGGATTCGTTGGACTGTTCCTGCTGTCC
ATTTACGTCAACCGTTGGATGGTGGCGAAAAGTCTGCTCACCTACTCCGA
GTTTGTCAGGAAGCTGAGGCGTCTGTTCTATCTGGTGCTTATCCTGTGGA
CCTCGTTCGTCATCAGTGCCTACGAAATTGGTATCTCCCGGGTGACCTGC
AATCTGGGCTATGTCATATGGATGCTGGCCATCGGGAGCACCACTTTGTG
TGCCAGTTTCGGAGCCATAGACTTTGCGATCAACAGCGTCATGCCGTGGG
ATCCGAATCCGTGGGAGGATCATGAGAAGGGTCTTCTATCGGGGGAGGCT
GTGGTCAAGAAAAGGGGCGGATCCGTTGTTCCGTTCACGATTAGCCAGGC
TCTGAACAAAAATGGATTGACATTCTTCCTGGTGGCCAACATTCTGACCG
GCATGGTGAACATCTTTCTCAGGCCAGAGGATCGCTCTCATTCCGAGTCC
GTCATCATTCTGCTGGTCTACATGTTTCTGGCCACCAAGCTGGTTCACGA
ATTGCTAAAGAGGGGTATTCGACTGGCCGCAAGCTTTCTAGACCAT

BO12503.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-RB 1515 CG18173-PB 1..1512 17..1528 7560 100 Plus
CG18173-RA 1515 CG18173-PA 1..1512 17..1528 7560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-RB 2200 CG18173-RB 300..1819 9..1528 7585 99.9 Plus
CG18173-RA 1916 CG18173-RA 16..1535 9..1528 7585 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1736963..1737807 853..9 4210 99.9 Minus
3L 28110227 3L 1736234..1736911 1528..851 3390 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:04:26 has no hits.

BO12503.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:02 Download gff for BO12503.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1515 17..1531 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:18 Download gff for BO12503.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1519 10..1528 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:01 Download gff for BO12503.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 24..1535 17..1530 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:03 Download gff for BO12503.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 1..1519 10..1528 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:01 Download gff for BO12503.complete
Subject Subject Range Query Range Percent Splice Strand
CG18173-RA 24..1535 17..1530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:01 Download gff for BO12503.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1736231..1736910 852..1530 99 <- Minus
3L 1736965..1737799 17..851 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:01 Download gff for BO12503.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1736231..1736910 852..1530 99 <- Minus
arm_3L 1736965..1737799 17..851 100   Minus

BO12503.pep Sequence

Translation from 16 to 1546

> BO12503.pep
MDSRAAAEPIPHVSPSPFPNPSAVNQTLEERLGLDLVQVYDWDWWGTLVQ
SGESLLLILSTLWCILLARVVCQKLRLHGSADLCYATEFLLVILPCILLV
SVAVDYSGYIGLLMLVATLWFLRTSRALERARTRVQFDLGGNRPMCLSIL
RALTHLITAVCILAIDFGSFYRPYRKSRQFGAKLMDTGIGLFVFTMAMVS
RRTRHWSDLRRSVIYSALPLILLGLARTVSILTLSYGQDAHEYGQHLNAF
FTLGFTKFLGSLVSILARKDLHLLPLGFGLLVIHQFGLSVLGISDYVMNE
DVERSSFLNANREGLVSLPGFVGLFLLSIYVNRWMVAKSLLTYSEFVRKL
RRLFYLVLILWTSFVISAYEIGISRVTCNLGYVIWMLAIGSTTLCASFGA
IDFAINSVMPWDPNPWEDHEKGLLSGEAVVKKRGGSVVPFTISQALNKNG
LTFFLVANILTGMVNIFLRPEDRSHSESVIILLVYMFLATKLVHELLKRG
IRLAASFLDH

BO12503.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18173-PB 504 CG18173-PB 1..504 1..504 2579 100 Plus
CG18173-PA 504 CG18173-PA 1..504 1..504 2579 100 Plus
CG9870-PA 459 CG9870-PA 21..459 45..504 785 40.2 Plus