Clone Sequence Records
BO12506.3prime Sequence
539 bp (538 high quality bases) assembled on 2006-05-08
> BO12506.3prime
ATGGTCTAGAAAGCTTGCTTGAAGGACACAGCAGCCCTTCTTCTTGTTCT
TCTTCTCGTCGATGACCACATGACTAGCGGACGTCGGTCCGGGAACCACC
TGTTTGGACACCTGTCCCAGCGAGGTGACCCCATTGTTTCCGGTTCCGCC
GCTCAGCTCGGTCGCCGTCGCTGCTTTTCCGGCGCCAGCGTCGGCAGTTG
CAGAGGCATGGGAATTTGTACCATTTTGTGCTGTTGCTAGATTCTGCGAG
AGATTTGATTTGATTACACTCTCGCCGATCGCCGTACCGCCGTTGCAATT
GTCGTCCGCATGCTGGGCGCTCCCGTTGCCAATTGTACGCTCCTCTGTGG
GTGTGATGGGCTTGCCACCTCTGATCATATTGACAATTTCATCAGCCTCT
CTGGACAGATCGCCGCCTGGTCGAAAGGGATTGTCCCAGCCGGAATCGGT
GCTTTGCTGTCGATCGTATGCCGCTCCCAGGCCAATCACCTGCTGCTGTT
GGATCCCCGCCGCCGTCGTGGCCATGTCGACTGATAACT
BO12506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15926-PA | 510 | CG15926-RA | 1..507 | 525..19 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42258-RF | 2740 | CG42258-RF | 373..879 | 525..19 | 2535 | 100 | Minus |
CG42258-RD | 1806 | CG42258-RD | 373..879 | 525..19 | 2535 | 100 | Minus |
CG42258-RC | 3827 | CG42258-RC | 1460..1966 | 525..19 | 2535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12476337..12476570 | 252..19 | 1170 | 100 | Minus |
X | 23542271 | X | 12476151..12476268 | 370..253 | 590 | 100 | Minus |
X | 23542271 | X | 12475913..12475999 | 453..367 | 435 | 100 | Minus |
X | 23542271 | X | 12475767..12475840 | 525..452 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:30:36 has no hits.
BO12506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:39 Download gff for
BO12506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15926-PA | 1..510 | 15..525 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:05 Download gff for
BO12506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15926-PA | 1..510 | 15..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:26:45 Download gff for
BO12506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 1460..1971 | 11..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:04 Download gff for
BO12506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 1460..1971 | 11..525 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:04 Download gff for
BO12506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12475767..12475840 | 452..525 | 100 | -> | Minus |
X | 12475915..12475997 | 369..451 | 100 | -> | Minus |
X | 12476153..12476268 | 253..368 | 100 | -> | Minus |
X | 12476337..12476575 | 11..252 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:26:45 Download gff for
BO12506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12369800..12369873 | 452..525 | 100 | -> | Minus |
arm_X | 12369948..12370030 | 369..451 | 100 | -> | Minus |
arm_X | 12370186..12370301 | 253..368 | 100 | -> | Minus |
arm_X | 12370370..12370608 | 11..252 | 98 | | Minus |
BO12506.5prime Sequence
539 bp (538 high quality bases) assembled on 2006-05-08
> BO12506.5prime
GAAGTTATCAGTCGACATGGCCACGACGGCGGCGGGGATCCAACAGCAGC
AGGTGATTGGCCTGGGAGCGGCATACGATCGACAGCAAAGCACCGATTCC
GGCTGGGACAATCCCTTTCGACCAGGCGGCGATCTGTCCAGAGAGGCTGA
TGAAATTGTCAATATGATCAGAGGTGGCAAGCCCATCACACCCACAGAGG
AGCGTACAATTGGCAACGGGAGCGCCCAGCATGCGGACGACAATTGCAAC
GGCGGTACGGCGATCGGCGAGAGTGTAATCAAATCAAATCTCTCGCAGAA
TCTAGCAACAGCACAAAATGGTACAAATTCCCATGCCTCTGCAACTGCCG
ACGCTGGCGCCGGAAAAGCAGCGACGGCGACCGAGCTGAGCGGCGGAACC
GGAAACAATGGGGTCACCTCGCTGGGACAGGTGTCCAAACAGGTGGTTCC
CGGACCGACGTCCGCTAGTCATGTGGTCATCGACGAGAAGAAGAACAAGA
AGAAGGGCTGCTGTGTCCTTCAAGCAAGCTTTCTAGACC
BO12506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15926-PA | 510 | CG15926-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42258-RF | 2740 | CG42258-RF | 373..879 | 17..523 | 2535 | 100 | Plus |
CG42258-RD | 1806 | CG42258-RD | 373..879 | 17..523 | 2535 | 100 | Plus |
CG42258-RC | 3827 | CG42258-RC | 1460..1966 | 17..523 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12476337..12476570 | 290..523 | 1170 | 100 | Plus |
X | 23542271 | X | 12476151..12476268 | 172..289 | 590 | 100 | Plus |
X | 23542271 | X | 12475913..12475999 | 89..175 | 435 | 100 | Plus |
X | 23542271 | X | 12475767..12475840 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:58:05 has no hits.
BO12506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:40 Download gff for
BO12506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15926-PA | 1..510 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:06 Download gff for
BO12506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15926-PA | 1..510 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:59 Download gff for
BO12506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 1460..1971 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:17 Download gff for
BO12506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 1460..1971 | 17..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:17 Download gff for
BO12506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12475767..12475840 | 17..90 | 100 | -> | Plus |
X | 12475915..12475997 | 91..173 | 100 | -> | Plus |
X | 12476153..12476268 | 174..289 | 100 | -> | Plus |
X | 12476337..12476575 | 290..531 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:59 Download gff for
BO12506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12369800..12369873 | 17..90 | 100 | -> | Plus |
arm_X | 12369948..12370030 | 91..173 | 100 | -> | Plus |
arm_X | 12370186..12370301 | 174..289 | 100 | -> | Plus |
arm_X | 12370370..12370608 | 290..531 | 98 | | Plus |
BO12506.complete Sequence
541 bp assembled on 2006-10-11
GenBank Submission: FJ632458
> BO12506.complete
GAAGTTATCAGTCGACATGGCCACGACGGCGGCGGGGATCCAACAGCAGC
AGGTGATTGGCCTGGGAGCGGCATACGATCGACAGCAAAGCACCGATTCC
GGCTGGGACAATCCCTTTCGACCAGGCGGCGATCTGTCCAGAGAGGCTGA
TGAAATTGTCAATATGATCAGAGGTGGCAAGCCCATCACACCCACAGAGG
AGCGTACAATTGGCAACGGGAGCGCCCAGCATGCGGACGACAATTGCAAC
GGCGGTACGGCGATCGGCGAGAGTGTAATCAAATCAAATCTCTCGCAGAA
TCTAGCAACAGCACAAAATGGTACAAATTCCCATGCCTCTGCAACTGCCG
ACGCTGGCGCCGGAAAAGCAGCGACGGCGACCGAGCTGAGCGGCGGAACC
GGAAACAATGGGGTCACCTCGCTGGGACAGGTGTCCAAACAGGTGGTTCC
CGGACCGACGTCCGCTAGTCATGTGGTCATCGACGAGAAGAAGAACAAGA
AGAAGGGCTGCTGTGTCCTTCAAGCAAGCTTTCTAGACCAT
BO12506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42258-RF | 510 | CG42258-PF | 1..507 | 17..523 | 2535 | 100 | Plus |
CG42258-RD | 510 | CG42258-PD | 1..507 | 17..523 | 2535 | 100 | Plus |
CG42258-RC | 1398 | CG42258-PC | 889..1395 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42258-RF | 2740 | CG42258-RF | 373..879 | 17..523 | 2535 | 100 | Plus |
CG42258-RD | 1806 | CG42258-RD | 373..879 | 17..523 | 2535 | 100 | Plus |
CG42258-RC | 3827 | CG42258-RC | 1460..1966 | 17..523 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12476337..12476570 | 290..523 | 1170 | 100 | Plus |
X | 23542271 | X | 12476151..12476268 | 172..289 | 590 | 100 | Plus |
X | 23542271 | X | 12475913..12475999 | 89..175 | 435 | 100 | Plus |
X | 23542271 | X | 12475767..12475840 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:38 has no hits.
BO12506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:03 Download gff for
BO12506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 889..1398 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:19 Download gff for
BO12506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 889..1400 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:52 Download gff for
BO12506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 1460..1966 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:04 Download gff for
BO12506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 889..1400 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:34 Download gff for
BO12506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42258-RC | 1460..1966 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:34 Download gff for
BO12506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12475767..12475840 | 17..90 | 100 | -> | Plus |
X | 12475915..12475997 | 91..173 | 100 | -> | Plus |
X | 12476153..12476268 | 174..289 | 100 | -> | Plus |
X | 12476337..12476570 | 290..525 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:52 Download gff for
BO12506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12369800..12369873 | 17..90 | 100 | -> | Plus |
arm_X | 12369948..12370030 | 91..173 | 100 | -> | Plus |
arm_X | 12370186..12370301 | 174..289 | 100 | -> | Plus |
arm_X | 12370370..12370603 | 290..525 | 99 | | Plus |
BO12506.pep Sequence
Translation from 16 to 541
> BO12506.pep
MATTAAGIQQQQVIGLGAAYDRQQSTDSGWDNPFRPGGDLSREADEIVNM
IRGGKPITPTEERTIGNGSAQHADDNCNGGTAIGESVIKSNLSQNLATAQ
NGTNSHASATADAGAGKAATATELSGGTGNNGVTSLGQVSKQVVPGPTSA
SHVVIDEKKNKKKGCCVLQASFLDH
BO12506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42258-PF | 169 | CG42258-PF | 1..169 | 1..169 | 871 | 100 | Plus |
CG42258-PD | 169 | CG15926-PA | 1..169 | 1..169 | 871 | 100 | Plus |
CG42258-PC | 465 | CG42258-PC | 297..465 | 1..169 | 871 | 100 | Plus |
CG42258-PE | 175 | CG42258-PE | 1..175 | 1..169 | 854 | 96.6 | Plus |