Clone BO12506 Report

Search the DGRC for BO12506

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG42258-RD
Protein status:BO12506.pep: validated full length
Sequenced Size:541

Clone Sequence Records

BO12506.3prime Sequence

539 bp (538 high quality bases) assembled on 2006-05-08

> BO12506.3prime
ATGGTCTAGAAAGCTTGCTTGAAGGACACAGCAGCCCTTCTTCTTGTTCT
TCTTCTCGTCGATGACCACATGACTAGCGGACGTCGGTCCGGGAACCACC
TGTTTGGACACCTGTCCCAGCGAGGTGACCCCATTGTTTCCGGTTCCGCC
GCTCAGCTCGGTCGCCGTCGCTGCTTTTCCGGCGCCAGCGTCGGCAGTTG
CAGAGGCATGGGAATTTGTACCATTTTGTGCTGTTGCTAGATTCTGCGAG
AGATTTGATTTGATTACACTCTCGCCGATCGCCGTACCGCCGTTGCAATT
GTCGTCCGCATGCTGGGCGCTCCCGTTGCCAATTGTACGCTCCTCTGTGG
GTGTGATGGGCTTGCCACCTCTGATCATATTGACAATTTCATCAGCCTCT
CTGGACAGATCGCCGCCTGGTCGAAAGGGATTGTCCCAGCCGGAATCGGT
GCTTTGCTGTCGATCGTATGCCGCTCCCAGGCCAATCACCTGCTGCTGTT
GGATCCCCGCCGCCGTCGTGGCCATGTCGACTGATAACT

BO12506.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15926-PA 510 CG15926-RA 1..507 525..19 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42258-RF 2740 CG42258-RF 373..879 525..19 2535 100 Minus
CG42258-RD 1806 CG42258-RD 373..879 525..19 2535 100 Minus
CG42258-RC 3827 CG42258-RC 1460..1966 525..19 2535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12476337..12476570 252..19 1170 100 Minus
X 23542271 X 12476151..12476268 370..253 590 100 Minus
X 23542271 X 12475913..12475999 453..367 435 100 Minus
X 23542271 X 12475767..12475840 525..452 370 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:30:36 has no hits.

BO12506.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:39 Download gff for BO12506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15926-PA 1..510 15..525 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:05 Download gff for BO12506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15926-PA 1..510 15..525 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:26:45 Download gff for BO12506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 1460..1971 11..525 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:04 Download gff for BO12506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 1460..1971 11..525 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:04 Download gff for BO12506.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12475767..12475840 452..525 100 -> Minus
X 12475915..12475997 369..451 100 -> Minus
X 12476153..12476268 253..368 100 -> Minus
X 12476337..12476575 11..252 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:26:45 Download gff for BO12506.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12369800..12369873 452..525 100 -> Minus
arm_X 12369948..12370030 369..451 100 -> Minus
arm_X 12370186..12370301 253..368 100 -> Minus
arm_X 12370370..12370608 11..252 98   Minus

BO12506.5prime Sequence

539 bp (538 high quality bases) assembled on 2006-05-08

> BO12506.5prime
GAAGTTATCAGTCGACATGGCCACGACGGCGGCGGGGATCCAACAGCAGC
AGGTGATTGGCCTGGGAGCGGCATACGATCGACAGCAAAGCACCGATTCC
GGCTGGGACAATCCCTTTCGACCAGGCGGCGATCTGTCCAGAGAGGCTGA
TGAAATTGTCAATATGATCAGAGGTGGCAAGCCCATCACACCCACAGAGG
AGCGTACAATTGGCAACGGGAGCGCCCAGCATGCGGACGACAATTGCAAC
GGCGGTACGGCGATCGGCGAGAGTGTAATCAAATCAAATCTCTCGCAGAA
TCTAGCAACAGCACAAAATGGTACAAATTCCCATGCCTCTGCAACTGCCG
ACGCTGGCGCCGGAAAAGCAGCGACGGCGACCGAGCTGAGCGGCGGAACC
GGAAACAATGGGGTCACCTCGCTGGGACAGGTGTCCAAACAGGTGGTTCC
CGGACCGACGTCCGCTAGTCATGTGGTCATCGACGAGAAGAAGAACAAGA
AGAAGGGCTGCTGTGTCCTTCAAGCAAGCTTTCTAGACC

BO12506.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15926-PA 510 CG15926-RA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG42258-RF 2740 CG42258-RF 373..879 17..523 2535 100 Plus
CG42258-RD 1806 CG42258-RD 373..879 17..523 2535 100 Plus
CG42258-RC 3827 CG42258-RC 1460..1966 17..523 2535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12476337..12476570 290..523 1170 100 Plus
X 23542271 X 12476151..12476268 172..289 590 100 Plus
X 23542271 X 12475913..12475999 89..175 435 100 Plus
X 23542271 X 12475767..12475840 17..90 370 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:58:05 has no hits.

BO12506.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:40 Download gff for BO12506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15926-PA 1..510 17..527 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:06 Download gff for BO12506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15926-PA 1..510 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:59 Download gff for BO12506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 1460..1971 17..531 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:17 Download gff for BO12506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 1460..1971 17..531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:17 Download gff for BO12506.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12475767..12475840 17..90 100 -> Plus
X 12475915..12475997 91..173 100 -> Plus
X 12476153..12476268 174..289 100 -> Plus
X 12476337..12476575 290..531 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:59 Download gff for BO12506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12369800..12369873 17..90 100 -> Plus
arm_X 12369948..12370030 91..173 100 -> Plus
arm_X 12370186..12370301 174..289 100 -> Plus
arm_X 12370370..12370608 290..531 98   Plus

BO12506.complete Sequence

541 bp assembled on 2006-10-11

GenBank Submission: FJ632458

> BO12506.complete
GAAGTTATCAGTCGACATGGCCACGACGGCGGCGGGGATCCAACAGCAGC
AGGTGATTGGCCTGGGAGCGGCATACGATCGACAGCAAAGCACCGATTCC
GGCTGGGACAATCCCTTTCGACCAGGCGGCGATCTGTCCAGAGAGGCTGA
TGAAATTGTCAATATGATCAGAGGTGGCAAGCCCATCACACCCACAGAGG
AGCGTACAATTGGCAACGGGAGCGCCCAGCATGCGGACGACAATTGCAAC
GGCGGTACGGCGATCGGCGAGAGTGTAATCAAATCAAATCTCTCGCAGAA
TCTAGCAACAGCACAAAATGGTACAAATTCCCATGCCTCTGCAACTGCCG
ACGCTGGCGCCGGAAAAGCAGCGACGGCGACCGAGCTGAGCGGCGGAACC
GGAAACAATGGGGTCACCTCGCTGGGACAGGTGTCCAAACAGGTGGTTCC
CGGACCGACGTCCGCTAGTCATGTGGTCATCGACGAGAAGAAGAACAAGA
AGAAGGGCTGCTGTGTCCTTCAAGCAAGCTTTCTAGACCAT

BO12506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42258-RF 510 CG42258-PF 1..507 17..523 2535 100 Plus
CG42258-RD 510 CG42258-PD 1..507 17..523 2535 100 Plus
CG42258-RC 1398 CG42258-PC 889..1395 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG42258-RF 2740 CG42258-RF 373..879 17..523 2535 100 Plus
CG42258-RD 1806 CG42258-RD 373..879 17..523 2535 100 Plus
CG42258-RC 3827 CG42258-RC 1460..1966 17..523 2535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12476337..12476570 290..523 1170 100 Plus
X 23542271 X 12476151..12476268 172..289 590 100 Plus
X 23542271 X 12475913..12475999 89..175 435 100 Plus
X 23542271 X 12475767..12475840 17..90 370 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:38 has no hits.

BO12506.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:03 Download gff for BO12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 889..1398 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:19 Download gff for BO12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 889..1400 17..531 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:52 Download gff for BO12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 1460..1966 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:04 Download gff for BO12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 889..1400 17..531 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:34 Download gff for BO12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG42258-RC 1460..1966 17..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:34 Download gff for BO12506.complete
Subject Subject Range Query Range Percent Splice Strand
X 12475767..12475840 17..90 100 -> Plus
X 12475915..12475997 91..173 100 -> Plus
X 12476153..12476268 174..289 100 -> Plus
X 12476337..12476570 290..525 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:52 Download gff for BO12506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12369800..12369873 17..90 100 -> Plus
arm_X 12369948..12370030 91..173 100 -> Plus
arm_X 12370186..12370301 174..289 100 -> Plus
arm_X 12370370..12370603 290..525 99   Plus

BO12506.pep Sequence

Translation from 16 to 541

> BO12506.pep
MATTAAGIQQQQVIGLGAAYDRQQSTDSGWDNPFRPGGDLSREADEIVNM
IRGGKPITPTEERTIGNGSAQHADDNCNGGTAIGESVIKSNLSQNLATAQ
NGTNSHASATADAGAGKAATATELSGGTGNNGVTSLGQVSKQVVPGPTSA
SHVVIDEKKNKKKGCCVLQASFLDH

BO12506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42258-PF 169 CG42258-PF 1..169 1..169 871 100 Plus
CG42258-PD 169 CG15926-PA 1..169 1..169 871 100 Plus
CG42258-PC 465 CG42258-PC 297..465 1..169 871 100 Plus
CG42258-PE 175 CG42258-PE 1..175 1..169 854 96.6 Plus