Clone BO12507 Report

Search the DGRC for BO12507

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptEsp-RA
Protein status:BO12507.pep:
Sequenced Size:1996

Clone Sequence Records

BO12507.3prime Sequence

864 bp (861 high quality bases) assembled on 2006-05-08

> BO12507.3prime
ATGGTCTAGAAAGCTTGCGGCCGTCTCGAGCCGCTTCTGCACATAGTTGC
GCTCCTTGAGCAGCTCATCCAACTGCTGCTCCTGGTAGTAGACCACGAAC
TGGGCCGCCGACACGTGCTCGAAAATGGAGCAGATACTCGGTTTGAGGTT
GTAGAAGAAGAGCAGTTGTCCTCGCTGATTGAAATCACTGATCAGCGAGT
CTATAACCGTGGCCGTTGTGAAGTCAGCCCCGTAGACATGCGACGCATCT
ATGACCACTGGGACATTTTGCCTAATGGACTGCTTGTTGACCAGATTCCT
CACATAATCCACAGACGGGAAGATCAGGCATCGATCTGGCGTGATCATTG
AGTACTCCACACCCGACTGTGTGGTCAGTAGCTCGGTGCTCAGCTTGGGA
CGCGCAGCATGGTAGAGGATAAAGATGACATTGAGTCCCACTCCAATGAG
GATGCCCCACTCCAGCGGCAAGACAAGGCAGGCCACAAAGGTTCCAACTC
CAGGCACCAGATCACTTTTCTTCGATCTCCACATGGGCTTGACCACCTTT
ACTTCAATCATGAAGACCACGGCGGATATAATGATGGCTGCCAGGGTAGG
GCGTGGAATGAAGTAGAAGTAGGGCGTGAGGAAGAGCAGGGCAATCATGA
CCAGGCCACCGGAGTAAATATTGCTCAGGGGAGTACGGACACCACTGGCA
TTATTGACTGCTCCACGACTAAGGGCTCCAGTGCCCGGAAAGGCTTGGAC
AAAAGAGTTGAAGATGTTGGCCGTTCCAATGGCAATCAATTCCTGCGAGG
CATCCACTGGCTTGCCATTGGCAAACGCTTTGCAGATGGCTATGTTTTCC
ATGAGCGAGATCAA

BO12507.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7005-PA 1965 Esp-RA 1117..1962 864..19 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Esp-RB 2732 CG7005-RB 1705..2550 864..19 4230 100 Minus
Esp-RA 2371 CG7005-RA 1344..2189 864..19 4230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24849731..24850230 518..19 2500 100 Minus
3R 32079331 3R 24849365..24849668 822..519 1520 100 Minus
3R 32079331 3R 24849262..24849304 864..822 215 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:38:20 has no hits.

BO12507.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:41 Download gff for BO12507.3prime
Subject Subject Range Query Range Percent Splice Strand
Esp-PA 1119..1965 15..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:08 Download gff for BO12507.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7005-PA 1119..1965 15..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:47 Download gff for BO12507.3prime
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 1346..2198 8..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:43 Download gff for BO12507.3prime
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 1346..2198 8..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:43 Download gff for BO12507.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24849264..24849304 822..862 100 -> Minus
3R 24849366..24849668 519..821 100 -> Minus
3R 24849731..24850239 8..518 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:47 Download gff for BO12507.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20674986..20675026 822..862 100 -> Minus
arm_3R 20675088..20675390 519..821 100 -> Minus
arm_3R 20675453..20675961 8..518 99   Minus

BO12507.5prime Sequence

884 bp (847 high quality bases) assembled on 2006-05-08

> BO12507.5prime
GAAGTTATCAGTCGACATGAAATCCAATCCGGCCTCGGATCACGTCTACT
TCAACGACGGATTCAAGTGCTCCACGATCAGCATCAGCACCAATCTCACC
GAACCCAATGGGAGCAGCAACAGCGTGGGATCCCAGGGATCCAAGGAGTT
TATACTCACTGAAGACGGCAAGAAGGTGAAGCCAACAGTGAGCACACTGG
ACTGCACACGCAGTTGGCTGCAGGATTGCCAGCGGCGCACCTTCAATCGC
AAGACCCTGCACAAGAGACTCCCGATCCTCGGATGGCTCCCCAAGTACAA
CAGCCAGGATGCTGTGGGCGACCTGGTGGCGGGCATCACAGTTGGTCTCA
CCGTCATACCACAGGCACTGGCCTATGCGGGAATAGCAGGACTGCCCGTA
GCCTATGGCTTGTATGCCTCCTTTGTGGGCTGCTTTGTGTACATATTCCT
GGGCAGCTGCAAGGATGTACCCATGGGGCCATCTGCGATTGTGGCCCTGC
TTACTTATCAGGCTGCTCAAGGATCTTGGCAGAAATCGGTGTTGCTCTGC
CTGCTCAGTGGAATTGTGGAGCTGCTGATGGGCCTCTTCGGACTGGGCTT
CCTGATTGACTTCGTCTCCGGACCAGTTTCCTCGGGCTTCACCTCCGCCG
TCTCGCTGATCATCCTCACCTCGCAGATCCAAAGTGTGCTGGGCATCACG
GCCAAGGGCAACACCTTCGTGGAGATCTGGACGCAAGTCTTCCACAACAT
CGAGCACACAAGGGCAGGGGACACGGTACTAGGGCTAACCTGCATTGTCA
TCCTGCTGTTGATGCGCAGTCTGTCTTCCTGTCGAATTGGACCAGTCGAC
GAGAAGGAATGCTCATCCTTCCAGCGGGCTGTGA

BO12507.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7005-PA 1965 Esp-RA 1..868 17..884 4315 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Esp-RB 2732 CG7005-RB 589..1456 17..884 4325 99.9 Plus
Esp-RA 2371 CG7005-RA 228..1095 17..884 4325 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24848533..24849013 404..884 2390 99.8 Plus
3R 32079331 3R 24848215..24848462 156..403 1240 100 Plus
3R 32079331 3R 24847238..24847376 17..155 695 100 Plus
Blast to na_te.dros performed 2015-02-10 00:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6824 52..124 113 61.6 Plus

BO12507.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:42 Download gff for BO12507.5prime
Subject Subject Range Query Range Percent Splice Strand
Esp-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:09 Download gff for BO12507.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7005-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:43 Download gff for BO12507.5prime
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 228..1094 17..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:01 Download gff for BO12507.5prime
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 228..1094 17..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:01 Download gff for BO12507.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24847238..24847376 17..155 100 -> Plus
3R 24848215..24848462 156..403 100 -> Plus
3R 24848533..24849012 404..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:43 Download gff for BO12507.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20672960..20673098 17..155 100 -> Plus
arm_3R 20673937..20674184 156..403 100 -> Plus
arm_3R 20674255..20674734 404..883 99   Plus

BO12507.complete Sequence

1996 bp assembled on 2008-01-17

GenBank Submission: FJ632459

> BO12507.complete
GAAGTTATCAGTCGACATGAAATCCAATCCGGCCTCGGATCACGTCTACT
TCAACGACGGATTCAAGTGCTCCACGATCAGCATCAGCACCAATCTCACC
GAACCCAATGGGAGCAGCAACAGCGTGGGATCCCAGGGATCCAAGGAGTT
TATACTCACTGAAGACGGCAAGAAGGTGAAGCCAACAGTGAGCACACTGG
ACTGCACACGCAGTTGGCTGCAGGATTGCCAGCGGCGCACCTTCAATCGC
AAGACCCTGCACAAGAGACTCCCGATCCTCGGATGGCTCCCCAAGTACAA
CAGCCAGGATGCTGTGGGCGACCTGGTGGCGGGCATCACAGTTGGTCTCA
CCGTCATACCACAGGCACTGGCCTATGCGGGAATAGCAGGACTGCCCGTA
GCCTATGGCTTGTATGCCTCCTTTGTGGGCTGCTTTGTGTACATATTCCT
GGGCAGCTGCAAGGATGTACCCATGGGGCCATCTGCGATTGTGGCCCTGC
TTACTTATCAGGCTGCTCAAGGATCTTGGCAGAAATCGGTGTTGCTCTGC
CTGCTCAGTGGAATTGTGGAGCTGCTGATGGGCCTCTTCGGACTGGGCTT
CCTGATTGACTTCGTCTCCGGACCAGTTTCCTCGGGCTTCACCTCCGCCG
TCTCGCTGATCATCCTCACCTCGCAGATCCAAAGTGTGCTGGGCATCACG
GCCAAGGGCAACACCTTCGTGGAGATCTGGACGCAAGTCTTCCACAACAT
CGAGCACACAAGGGCAGGGGACACGGTACTAGGGCTAACCTGCATTGTCA
TCCTGCTGTTGATGCGCAGTCTGTCTTCCTGTCGAATTGGACCAGTCGAC
GAGAAGGAATGCTCATCCTTCCAGCGGGCTGTGAACAAGATCCTTTGGAT
CGTGGGTACTGCTCGAAATGCCATTCTGGTGGTCGTTTGCTGCATCATGG
GCTATATGCTCCACACCGAGGAGCACGGAGCTCCGTTTCGAGTGGTGGGA
GAGATACCACCCGGGCTCCCCAGCATCCAGTTGCCACCCACATCGTTGAC
TGCCAATGAAACCAGCAATGGAGTGGCCGAGGGATTCGTGGAAATGGTTC
ACAGCATGGGTTCCGGCTTGGTGGTGATTCCCTTGATCTCGCTCATGGAA
AACATAGCCATCTGCAAAGCGTTTGCCAATGGCAAGCCAGTGGATGCCTC
GCAGGAATTGATTGCCATTGGAACGGCCAACATCTTCAACTCTTTTGTCC
AAGCCTTTCCGGGCACTGGAGCCCTTAGTCGTGGAGCAGTCAATAATGCC
AGTGGTGTCCGTACTCCCCTGAGCAATATTTACTCCGGTGGCCTGGTCAT
GATTGCCCTGCTCTTCCTCACGCCCTACTTCTACTTCATTCCACGCCCTA
CCCTGGCAGCCATCATTATATCCGCCGTGGTCTTCATGATTGAAGTAAAG
GTGGTCAAGCCCATGTGGAGATCGAAGAAAAGTGATCTGGTGCCTGGAGT
TGGAACCTTTGTGGCCTGCCTTGTCTTGCCGCTGGAGTGGGGCATCCTCA
TTGGAGTGGGACTCAATGTCATCTTTATCCTCTACCATGCTGCGCGTCCC
AAGCTGAGCACCGAGCTACTGACCACACAGTCGGGTGTGGAGTACTCAAT
GATCACGCCAGATCGATGCCTGATCTTCCCGTCTGTGGATTATGTGAGGA
ATCTGGTCAACAAGCAGTCCATTAGGCAAAATGTCCCAGTGGTCATAGAT
GCGTCGCATGTCTACGGGGCTGACTTCACAACGGCCACGGTTATAGACTC
GCTGATCAGTGATTTCAATCAGCGAGGACAACTGCTCTTCTTCTACAACC
TCAAACCGAGTATCTGCTCCATTTTCGAGCACGTGTCGGCGGCCCAGTTC
GTGGTCTACTACCAGGAGCAGCAGTTGGATGAGCTGCTCAAGGAGCGCAA
CTATGTGCAGAAGCGGCTCGAGACGGCCGCAAGCTTTCTAGACCAT

BO12507.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Esp-RB 1965 CG7005-PB 1..1962 17..1978 9795 99.9 Plus
Esp-RA 1965 CG7005-PA 1..1962 17..1978 9795 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Esp-RB 2732 CG7005-RB 589..2550 17..1978 9795 99.9 Plus
Esp-RA 2371 CG7005-RA 228..2189 17..1978 9795 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24848533..24849304 404..1175 3845 99.9 Plus
3R 32079331 3R 24849731..24850230 1479..1978 2500 100 Plus
3R 32079331 3R 24849365..24849668 1175..1478 1520 100 Plus
3R 32079331 3R 24848215..24848462 156..403 1240 100 Plus
3R 32079331 3R 24847238..24847376 17..155 695 100 Plus
Blast to na_te.dros performed 2014-11-27 16:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6824 52..124 113 61.6 Plus

BO12507.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:38 Download gff for BO12507.complete
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 1..1965 17..1982 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:09 Download gff for BO12507.complete
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 225..2186 17..1980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:01 Download gff for BO12507.complete
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 228..2189 17..1980 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:38 Download gff for BO12507.complete
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 225..2195 17..1989 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:28 Download gff for BO12507.complete
Subject Subject Range Query Range Percent Splice Strand
Esp-RA 228..2189 17..1980 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:28 Download gff for BO12507.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24849731..24850230 1479..1980 99   Plus
3R 24847238..24847376 17..155 100 -> Plus
3R 24848215..24848462 156..403 100 -> Plus
3R 24848533..24849304 404..1175 99 -> Plus
3R 24849366..24849668 1176..1478 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:01 Download gff for BO12507.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20672960..20673098 17..155 100 -> Plus
arm_3R 20673937..20674184 156..403 100 -> Plus
arm_3R 20674255..20675026 404..1175 99 -> Plus
arm_3R 20675088..20675390 1176..1478 100 -> Plus
arm_3R 20675453..20675952 1479..1980 99   Plus

BO12507.pep Sequence

Translation from 16 to 1996

> BO12507.pep
MKSNPASDHVYFNDGFKCSTISISTNLTEPNGSSNSVGSQGSKEFILTED
GKKVKPTVSTLDCTRSWLQDCQRRTFNRKTLHKRLPILGWLPKYNSQDAV
GDLVAGITVGLTVIPQALAYAGIAGLPVAYGLYASFVGCFVYIFLGSCKD
VPMGPSAIVALLTYQAAQGSWQKSVLLCLLSGIVELLMGLFGLGFLIDFV
SGPVSSGFTSAVSLIILTSQIQSVLGITAKGNTFVEIWTQVFHNIEHTRA
GDTVLGLTCIVILLLMRSLSSCRIGPVDEKECSSFQRAVNKILWIVGTAR
NAILVVVCCIMGYMLHTEEHGAPFRVVGEIPPGLPSIQLPPTSLTANETS
NGVAEGFVEMVHSMGSGLVVIPLISLMENIAICKAFANGKPVDASQELIA
IGTANIFNSFVQAFPGTGALSRGAVNNASGVRTPLSNIYSGGLVMIALLF
LTPYFYFIPRPTLAAIIISAVVFMIEVKVVKPMWRSKKSDLVPGVGTFVA
CLVLPLEWGILIGVGLNVIFILYHAARPKLSTELLTTQSGVEYSMITPDR
CLIFPSVDYVRNLVNKQSIRQNVPVVIDASHVYGADFTTATVIDSLISDF
NQRGQLLFFYNLKPSICSIFEHVSAAQFVVYYQEQQLDELLKERNYVQKR
LETAASFLDH

BO12507.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Esp-PB 654 CG7005-PB 1..654 1..654 3346 100 Plus
Esp-PA 654 CG7005-PA 1..654 1..654 3346 100 Plus
CG9717-PA 638 CG9717-PA 44..622 56..631 1665 54.6 Plus
CG9702-PB 676 CG9702-PB 15..654 29..660 1598 49.2 Plus
CG9702-PA 676 CG9702-PA 15..654 29..660 1598 49.2 Plus