Clone Sequence Records
BO12507.3prime Sequence
864 bp (861 high quality bases) assembled on 2006-05-08
> BO12507.3prime
ATGGTCTAGAAAGCTTGCGGCCGTCTCGAGCCGCTTCTGCACATAGTTGC
GCTCCTTGAGCAGCTCATCCAACTGCTGCTCCTGGTAGTAGACCACGAAC
TGGGCCGCCGACACGTGCTCGAAAATGGAGCAGATACTCGGTTTGAGGTT
GTAGAAGAAGAGCAGTTGTCCTCGCTGATTGAAATCACTGATCAGCGAGT
CTATAACCGTGGCCGTTGTGAAGTCAGCCCCGTAGACATGCGACGCATCT
ATGACCACTGGGACATTTTGCCTAATGGACTGCTTGTTGACCAGATTCCT
CACATAATCCACAGACGGGAAGATCAGGCATCGATCTGGCGTGATCATTG
AGTACTCCACACCCGACTGTGTGGTCAGTAGCTCGGTGCTCAGCTTGGGA
CGCGCAGCATGGTAGAGGATAAAGATGACATTGAGTCCCACTCCAATGAG
GATGCCCCACTCCAGCGGCAAGACAAGGCAGGCCACAAAGGTTCCAACTC
CAGGCACCAGATCACTTTTCTTCGATCTCCACATGGGCTTGACCACCTTT
ACTTCAATCATGAAGACCACGGCGGATATAATGATGGCTGCCAGGGTAGG
GCGTGGAATGAAGTAGAAGTAGGGCGTGAGGAAGAGCAGGGCAATCATGA
CCAGGCCACCGGAGTAAATATTGCTCAGGGGAGTACGGACACCACTGGCA
TTATTGACTGCTCCACGACTAAGGGCTCCAGTGCCCGGAAAGGCTTGGAC
AAAAGAGTTGAAGATGTTGGCCGTTCCAATGGCAATCAATTCCTGCGAGG
CATCCACTGGCTTGCCATTGGCAAACGCTTTGCAGATGGCTATGTTTTCC
ATGAGCGAGATCAA
BO12507.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7005-PA | 1965 | Esp-RA | 1117..1962 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Esp-RB | 2732 | CG7005-RB | 1705..2550 | 864..19 | 4230 | 100 | Minus |
Esp-RA | 2371 | CG7005-RA | 1344..2189 | 864..19 | 4230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24849731..24850230 | 518..19 | 2500 | 100 | Minus |
3R | 32079331 | 3R | 24849365..24849668 | 822..519 | 1520 | 100 | Minus |
3R | 32079331 | 3R | 24849262..24849304 | 864..822 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:38:20 has no hits.
BO12507.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:41 Download gff for
BO12507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-PA | 1119..1965 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:08 Download gff for
BO12507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7005-PA | 1119..1965 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:47 Download gff for
BO12507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 1346..2198 | 8..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:43 Download gff for
BO12507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 1346..2198 | 8..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:43 Download gff for
BO12507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24849264..24849304 | 822..862 | 100 | -> | Minus |
3R | 24849366..24849668 | 519..821 | 100 | -> | Minus |
3R | 24849731..24850239 | 8..518 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:47 Download gff for
BO12507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20674986..20675026 | 822..862 | 100 | -> | Minus |
arm_3R | 20675088..20675390 | 519..821 | 100 | -> | Minus |
arm_3R | 20675453..20675961 | 8..518 | 99 | | Minus |
BO12507.5prime Sequence
884 bp (847 high quality bases) assembled on 2006-05-08
> BO12507.5prime
GAAGTTATCAGTCGACATGAAATCCAATCCGGCCTCGGATCACGTCTACT
TCAACGACGGATTCAAGTGCTCCACGATCAGCATCAGCACCAATCTCACC
GAACCCAATGGGAGCAGCAACAGCGTGGGATCCCAGGGATCCAAGGAGTT
TATACTCACTGAAGACGGCAAGAAGGTGAAGCCAACAGTGAGCACACTGG
ACTGCACACGCAGTTGGCTGCAGGATTGCCAGCGGCGCACCTTCAATCGC
AAGACCCTGCACAAGAGACTCCCGATCCTCGGATGGCTCCCCAAGTACAA
CAGCCAGGATGCTGTGGGCGACCTGGTGGCGGGCATCACAGTTGGTCTCA
CCGTCATACCACAGGCACTGGCCTATGCGGGAATAGCAGGACTGCCCGTA
GCCTATGGCTTGTATGCCTCCTTTGTGGGCTGCTTTGTGTACATATTCCT
GGGCAGCTGCAAGGATGTACCCATGGGGCCATCTGCGATTGTGGCCCTGC
TTACTTATCAGGCTGCTCAAGGATCTTGGCAGAAATCGGTGTTGCTCTGC
CTGCTCAGTGGAATTGTGGAGCTGCTGATGGGCCTCTTCGGACTGGGCTT
CCTGATTGACTTCGTCTCCGGACCAGTTTCCTCGGGCTTCACCTCCGCCG
TCTCGCTGATCATCCTCACCTCGCAGATCCAAAGTGTGCTGGGCATCACG
GCCAAGGGCAACACCTTCGTGGAGATCTGGACGCAAGTCTTCCACAACAT
CGAGCACACAAGGGCAGGGGACACGGTACTAGGGCTAACCTGCATTGTCA
TCCTGCTGTTGATGCGCAGTCTGTCTTCCTGTCGAATTGGACCAGTCGAC
GAGAAGGAATGCTCATCCTTCCAGCGGGCTGTGA
BO12507.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7005-PA | 1965 | Esp-RA | 1..868 | 17..884 | 4315 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Esp-RB | 2732 | CG7005-RB | 589..1456 | 17..884 | 4325 | 99.9 | Plus |
Esp-RA | 2371 | CG7005-RA | 228..1095 | 17..884 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24848533..24849013 | 404..884 | 2390 | 99.8 | Plus |
3R | 32079331 | 3R | 24848215..24848462 | 156..403 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 24847238..24847376 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 00:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6824 | 52..124 | 113 | 61.6 | Plus |
BO12507.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:42 Download gff for
BO12507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:09 Download gff for
BO12507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7005-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:43 Download gff for
BO12507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 228..1094 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:01 Download gff for
BO12507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 228..1094 | 17..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:01 Download gff for
BO12507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24847238..24847376 | 17..155 | 100 | -> | Plus |
3R | 24848215..24848462 | 156..403 | 100 | -> | Plus |
3R | 24848533..24849012 | 404..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:43 Download gff for
BO12507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20672960..20673098 | 17..155 | 100 | -> | Plus |
arm_3R | 20673937..20674184 | 156..403 | 100 | -> | Plus |
arm_3R | 20674255..20674734 | 404..883 | 99 | | Plus |
BO12507.complete Sequence
1996 bp assembled on 2008-01-17
GenBank Submission: FJ632459
> BO12507.complete
GAAGTTATCAGTCGACATGAAATCCAATCCGGCCTCGGATCACGTCTACT
TCAACGACGGATTCAAGTGCTCCACGATCAGCATCAGCACCAATCTCACC
GAACCCAATGGGAGCAGCAACAGCGTGGGATCCCAGGGATCCAAGGAGTT
TATACTCACTGAAGACGGCAAGAAGGTGAAGCCAACAGTGAGCACACTGG
ACTGCACACGCAGTTGGCTGCAGGATTGCCAGCGGCGCACCTTCAATCGC
AAGACCCTGCACAAGAGACTCCCGATCCTCGGATGGCTCCCCAAGTACAA
CAGCCAGGATGCTGTGGGCGACCTGGTGGCGGGCATCACAGTTGGTCTCA
CCGTCATACCACAGGCACTGGCCTATGCGGGAATAGCAGGACTGCCCGTA
GCCTATGGCTTGTATGCCTCCTTTGTGGGCTGCTTTGTGTACATATTCCT
GGGCAGCTGCAAGGATGTACCCATGGGGCCATCTGCGATTGTGGCCCTGC
TTACTTATCAGGCTGCTCAAGGATCTTGGCAGAAATCGGTGTTGCTCTGC
CTGCTCAGTGGAATTGTGGAGCTGCTGATGGGCCTCTTCGGACTGGGCTT
CCTGATTGACTTCGTCTCCGGACCAGTTTCCTCGGGCTTCACCTCCGCCG
TCTCGCTGATCATCCTCACCTCGCAGATCCAAAGTGTGCTGGGCATCACG
GCCAAGGGCAACACCTTCGTGGAGATCTGGACGCAAGTCTTCCACAACAT
CGAGCACACAAGGGCAGGGGACACGGTACTAGGGCTAACCTGCATTGTCA
TCCTGCTGTTGATGCGCAGTCTGTCTTCCTGTCGAATTGGACCAGTCGAC
GAGAAGGAATGCTCATCCTTCCAGCGGGCTGTGAACAAGATCCTTTGGAT
CGTGGGTACTGCTCGAAATGCCATTCTGGTGGTCGTTTGCTGCATCATGG
GCTATATGCTCCACACCGAGGAGCACGGAGCTCCGTTTCGAGTGGTGGGA
GAGATACCACCCGGGCTCCCCAGCATCCAGTTGCCACCCACATCGTTGAC
TGCCAATGAAACCAGCAATGGAGTGGCCGAGGGATTCGTGGAAATGGTTC
ACAGCATGGGTTCCGGCTTGGTGGTGATTCCCTTGATCTCGCTCATGGAA
AACATAGCCATCTGCAAAGCGTTTGCCAATGGCAAGCCAGTGGATGCCTC
GCAGGAATTGATTGCCATTGGAACGGCCAACATCTTCAACTCTTTTGTCC
AAGCCTTTCCGGGCACTGGAGCCCTTAGTCGTGGAGCAGTCAATAATGCC
AGTGGTGTCCGTACTCCCCTGAGCAATATTTACTCCGGTGGCCTGGTCAT
GATTGCCCTGCTCTTCCTCACGCCCTACTTCTACTTCATTCCACGCCCTA
CCCTGGCAGCCATCATTATATCCGCCGTGGTCTTCATGATTGAAGTAAAG
GTGGTCAAGCCCATGTGGAGATCGAAGAAAAGTGATCTGGTGCCTGGAGT
TGGAACCTTTGTGGCCTGCCTTGTCTTGCCGCTGGAGTGGGGCATCCTCA
TTGGAGTGGGACTCAATGTCATCTTTATCCTCTACCATGCTGCGCGTCCC
AAGCTGAGCACCGAGCTACTGACCACACAGTCGGGTGTGGAGTACTCAAT
GATCACGCCAGATCGATGCCTGATCTTCCCGTCTGTGGATTATGTGAGGA
ATCTGGTCAACAAGCAGTCCATTAGGCAAAATGTCCCAGTGGTCATAGAT
GCGTCGCATGTCTACGGGGCTGACTTCACAACGGCCACGGTTATAGACTC
GCTGATCAGTGATTTCAATCAGCGAGGACAACTGCTCTTCTTCTACAACC
TCAAACCGAGTATCTGCTCCATTTTCGAGCACGTGTCGGCGGCCCAGTTC
GTGGTCTACTACCAGGAGCAGCAGTTGGATGAGCTGCTCAAGGAGCGCAA
CTATGTGCAGAAGCGGCTCGAGACGGCCGCAAGCTTTCTAGACCAT
BO12507.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Esp-RB | 1965 | CG7005-PB | 1..1962 | 17..1978 | 9795 | 99.9 | Plus |
Esp-RA | 1965 | CG7005-PA | 1..1962 | 17..1978 | 9795 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Esp-RB | 2732 | CG7005-RB | 589..2550 | 17..1978 | 9795 | 99.9 | Plus |
Esp-RA | 2371 | CG7005-RA | 228..2189 | 17..1978 | 9795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24848533..24849304 | 404..1175 | 3845 | 99.9 | Plus |
3R | 32079331 | 3R | 24849731..24850230 | 1479..1978 | 2500 | 100 | Plus |
3R | 32079331 | 3R | 24849365..24849668 | 1175..1478 | 1520 | 100 | Plus |
3R | 32079331 | 3R | 24848215..24848462 | 156..403 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 24847238..24847376 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6824 | 52..124 | 113 | 61.6 | Plus |
BO12507.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:38 Download gff for
BO12507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 1..1965 | 17..1982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:09 Download gff for
BO12507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 225..2186 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:01 Download gff for
BO12507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 228..2189 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:38 Download gff for
BO12507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 225..2195 | 17..1989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:28 Download gff for
BO12507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Esp-RA | 228..2189 | 17..1980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:28 Download gff for
BO12507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24849731..24850230 | 1479..1980 | 99 | | Plus |
3R | 24847238..24847376 | 17..155 | 100 | -> | Plus |
3R | 24848215..24848462 | 156..403 | 100 | -> | Plus |
3R | 24848533..24849304 | 404..1175 | 99 | -> | Plus |
3R | 24849366..24849668 | 1176..1478 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:01 Download gff for
BO12507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20672960..20673098 | 17..155 | 100 | -> | Plus |
arm_3R | 20673937..20674184 | 156..403 | 100 | -> | Plus |
arm_3R | 20674255..20675026 | 404..1175 | 99 | -> | Plus |
arm_3R | 20675088..20675390 | 1176..1478 | 100 | -> | Plus |
arm_3R | 20675453..20675952 | 1479..1980 | 99 | | Plus |
BO12507.pep Sequence
Translation from 16 to 1996
> BO12507.pep
MKSNPASDHVYFNDGFKCSTISISTNLTEPNGSSNSVGSQGSKEFILTED
GKKVKPTVSTLDCTRSWLQDCQRRTFNRKTLHKRLPILGWLPKYNSQDAV
GDLVAGITVGLTVIPQALAYAGIAGLPVAYGLYASFVGCFVYIFLGSCKD
VPMGPSAIVALLTYQAAQGSWQKSVLLCLLSGIVELLMGLFGLGFLIDFV
SGPVSSGFTSAVSLIILTSQIQSVLGITAKGNTFVEIWTQVFHNIEHTRA
GDTVLGLTCIVILLLMRSLSSCRIGPVDEKECSSFQRAVNKILWIVGTAR
NAILVVVCCIMGYMLHTEEHGAPFRVVGEIPPGLPSIQLPPTSLTANETS
NGVAEGFVEMVHSMGSGLVVIPLISLMENIAICKAFANGKPVDASQELIA
IGTANIFNSFVQAFPGTGALSRGAVNNASGVRTPLSNIYSGGLVMIALLF
LTPYFYFIPRPTLAAIIISAVVFMIEVKVVKPMWRSKKSDLVPGVGTFVA
CLVLPLEWGILIGVGLNVIFILYHAARPKLSTELLTTQSGVEYSMITPDR
CLIFPSVDYVRNLVNKQSIRQNVPVVIDASHVYGADFTTATVIDSLISDF
NQRGQLLFFYNLKPSICSIFEHVSAAQFVVYYQEQQLDELLKERNYVQKR
LETAASFLDH
BO12507.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Esp-PB | 654 | CG7005-PB | 1..654 | 1..654 | 3346 | 100 | Plus |
Esp-PA | 654 | CG7005-PA | 1..654 | 1..654 | 3346 | 100 | Plus |
CG9717-PA | 638 | CG9717-PA | 44..622 | 56..631 | 1665 | 54.6 | Plus |
CG9702-PB | 676 | CG9702-PB | 15..654 | 29..660 | 1598 | 49.2 | Plus |
CG9702-PA | 676 | CG9702-PA | 15..654 | 29..660 | 1598 | 49.2 | Plus |