Clone Sequence Records
BO12508.5prime Sequence
380 bp (379 high quality bases) assembled on 2006-05-08
> BO12508.5prime
GAAGTTATCAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGA
CGAACAAGGGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCG
ATTGCCTGCGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGG
CTTCCGTAAGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAG
CTATCGGCGTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTAC
CTGGCCAAAAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGA
CGATTTCCCGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTT
GGGTGCCAGTGCGCGCAAGCTTTCTAGACC
BO12508.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-PA | 351 | CG12400-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-RB | 762 | CG12400-RB | 163..512 | 15..364 | 1750 | 100 | Plus |
CG12400-RA | 458 | CG12400-RA | 36..385 | 15..364 | 1750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3145527..3145686 | 174..15 | 800 | 100 | Minus |
2L | 23513712 | 2L | 3145305..3145449 | 317..173 | 725 | 100 | Minus |
2L | 23513712 | 2L | 3145203..3145250 | 364..317 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:06:46 has no hits.
BO12508.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:44 Download gff for
BO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-PA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:12 Download gff for
BO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-PA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:13 Download gff for
BO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 33..389 | 12..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:57 Download gff for
BO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 33..389 | 12..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:57 Download gff for
BO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3145199..3145249 | 318..369 | 96 | <- | Minus |
2L | 3145305..3145448 | 174..317 | 100 | <- | Minus |
2L | 3145528..3145689 | 12..173 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:13 Download gff for
BO12508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3145199..3145249 | 318..369 | 96 | <- | Minus |
arm_2L | 3145305..3145448 | 174..317 | 100 | <- | Minus |
arm_2L | 3145528..3145689 | 12..173 | 99 | | Minus |
BO12508.3prime Sequence
380 bp (379 high quality bases) assembled on 2006-05-08
> BO12508.3prime
ATGGTCTAGAAAGCTTGCGCGCACTGGCACCCAACTCTCCAGCACTTGGC
CATAGGTCTTGCGTTCCTTCACCGGGAAATCGTCGGGATGCAGTTCGATG
TAGTGCCGGAGGACGGCGTCCCTTTTGGCCAGGTACTCGTTCCTCTTCTG
ATCGAAATAAGCTCCTGCGCCGACGCCGATAGCTCCGAAGGCGATGTGCT
TCTGGATGCCGGAAAACACGGGCTTACGGAAGCCCCAGTTGATGAAAATG
GCCGCGCCCACGCCGGCCACACCGCAGGCAATCGGATTCCATATCGGCGA
GAGGAAAGAAGGCTCGTGGGTGCCCTTGTTCGTCAAAAGTTCCAGCGGAT
CGTTCACGGCACTCATGTCGACTGATAACT
BO12508.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-PA | 351 | CG12400-RA | 1..348 | 366..19 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-RB | 762 | CG12400-RB | 163..512 | 368..19 | 1750 | 100 | Minus |
CG12400-RA | 458 | CG12400-RA | 36..385 | 368..19 | 1750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3145527..3145686 | 209..368 | 800 | 100 | Plus |
2L | 23513712 | 2L | 3145305..3145449 | 66..210 | 725 | 100 | Plus |
2L | 23513712 | 2L | 3145203..3145250 | 19..66 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:04:27 has no hits.
BO12508.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:43 Download gff for
BO12508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-PA | 1..351 | 15..366 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:11 Download gff for
BO12508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-PA | 1..351 | 15..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:46 Download gff for
BO12508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 33..389 | 14..371 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:16 Download gff for
BO12508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 33..389 | 14..371 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:16 Download gff for
BO12508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3145305..3145448 | 66..209 | 100 | <- | Plus |
2L | 3145528..3145689 | 210..371 | 99 | | Plus |
2L | 3145200..3145249 | 13..65 | 92 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:46 Download gff for
BO12508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3145200..3145249 | 13..65 | 92 | <- | Plus |
arm_2L | 3145305..3145448 | 66..209 | 100 | <- | Plus |
arm_2L | 3145528..3145689 | 210..371 | 99 | | Plus |
BO12508.complete Sequence
382 bp assembled on 2006-10-11
GenBank Submission: FJ632460
> BO12508.complete
GAAGTTATCAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGA
CGAACAAGGGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCG
ATTGCCTGCGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGG
CTTCCGTAAGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAG
CTATCGGCGTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTAC
CTGGCCAAAAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGA
CGATTTCCCGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTT
GGGTGCCAGTGCGCGCAAGCTTTCTAGACCAT
BO12508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-RB | 351 | CG12400-PB | 1..348 | 17..364 | 1740 | 100 | Plus |
CG12400-RA | 351 | CG12400-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-RB | 762 | CG12400-RB | 163..512 | 15..364 | 1750 | 100 | Plus |
CG12400-RA | 458 | CG12400-RA | 36..385 | 15..364 | 1750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3145527..3145686 | 174..15 | 800 | 100 | Minus |
2L | 23513712 | 2L | 3145305..3145449 | 317..173 | 725 | 100 | Minus |
2L | 23513712 | 2L | 3145203..3145250 | 364..317 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:02:49 has no hits.
BO12508.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:05 Download gff for
BO12508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:00 Download gff for
BO12508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 36..383 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:36 Download gff for
BO12508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 38..385 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:05 Download gff for
BO12508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 31..387 | 12..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:44 Download gff for
BO12508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 38..385 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:44 Download gff for
BO12508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3145201..3145249 | 318..366 | 95 | <- | Minus |
2L | 3145305..3145448 | 174..317 | 100 | <- | Minus |
2L | 3145528..3145684 | 17..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:36 Download gff for
BO12508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3145201..3145249 | 318..366 | 95 | <- | Minus |
arm_2L | 3145305..3145448 | 174..317 | 100 | <- | Minus |
arm_2L | 3145528..3145684 | 17..173 | 100 | | Minus |
BO12508.pep Sequence
Translation from 16 to 382
> BO12508.pep
MSAVNDPLELLTNKGTHEPSFLSPIWNPIACGVAGVGAAIFINWGFRKPV
FSGIQKHIAFGAIGVGAGAYFDQKRNEYLAKRDAVLRHYIELHPDDFPVK
ERKTYGQVLESWVPVRASFLDH
BO12508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-PB | 116 | CG12400-PB | 1..116 | 1..116 | 624 | 100 | Plus |
CG12400-PA | 116 | CG12400-PA | 1..116 | 1..116 | 624 | 100 | Plus |