Clone BO12508 Report

Search the DGRC for BO12508

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG12400-RA
Protein status:BO12508.pep: validated full length
Sequenced Size:382

Clone Sequence Records

BO12508.5prime Sequence

380 bp (379 high quality bases) assembled on 2006-05-08

> BO12508.5prime
GAAGTTATCAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGA
CGAACAAGGGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCG
ATTGCCTGCGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGG
CTTCCGTAAGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAG
CTATCGGCGTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTAC
CTGGCCAAAAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGA
CGATTTCCCGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTT
GGGTGCCAGTGCGCGCAAGCTTTCTAGACC

BO12508.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-PA 351 CG12400-RA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-RB 762 CG12400-RB 163..512 15..364 1750 100 Plus
CG12400-RA 458 CG12400-RA 36..385 15..364 1750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3145527..3145686 174..15 800 100 Minus
2L 23513712 2L 3145305..3145449 317..173 725 100 Minus
2L 23513712 2L 3145203..3145250 364..317 240 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:06:46 has no hits.

BO12508.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:44 Download gff for BO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-PA 1..351 17..368 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:12 Download gff for BO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-PA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:13 Download gff for BO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 33..389 12..369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:57 Download gff for BO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 33..389 12..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:57 Download gff for BO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3145199..3145249 318..369 96 <- Minus
2L 3145305..3145448 174..317 100 <- Minus
2L 3145528..3145689 12..173 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:13 Download gff for BO12508.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3145199..3145249 318..369 96 <- Minus
arm_2L 3145305..3145448 174..317 100 <- Minus
arm_2L 3145528..3145689 12..173 99   Minus

BO12508.3prime Sequence

380 bp (379 high quality bases) assembled on 2006-05-08

> BO12508.3prime
ATGGTCTAGAAAGCTTGCGCGCACTGGCACCCAACTCTCCAGCACTTGGC
CATAGGTCTTGCGTTCCTTCACCGGGAAATCGTCGGGATGCAGTTCGATG
TAGTGCCGGAGGACGGCGTCCCTTTTGGCCAGGTACTCGTTCCTCTTCTG
ATCGAAATAAGCTCCTGCGCCGACGCCGATAGCTCCGAAGGCGATGTGCT
TCTGGATGCCGGAAAACACGGGCTTACGGAAGCCCCAGTTGATGAAAATG
GCCGCGCCCACGCCGGCCACACCGCAGGCAATCGGATTCCATATCGGCGA
GAGGAAAGAAGGCTCGTGGGTGCCCTTGTTCGTCAAAAGTTCCAGCGGAT
CGTTCACGGCACTCATGTCGACTGATAACT

BO12508.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-PA 351 CG12400-RA 1..348 366..19 1740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-RB 762 CG12400-RB 163..512 368..19 1750 100 Minus
CG12400-RA 458 CG12400-RA 36..385 368..19 1750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3145527..3145686 209..368 800 100 Plus
2L 23513712 2L 3145305..3145449 66..210 725 100 Plus
2L 23513712 2L 3145203..3145250 19..66 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:04:27 has no hits.

BO12508.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:43 Download gff for BO12508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-PA 1..351 15..366 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:11 Download gff for BO12508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-PA 1..351 15..366 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:46 Download gff for BO12508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 33..389 14..371 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:16 Download gff for BO12508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 33..389 14..371 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:16 Download gff for BO12508.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3145305..3145448 66..209 100 <- Plus
2L 3145528..3145689 210..371 99   Plus
2L 3145200..3145249 13..65 92 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:46 Download gff for BO12508.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3145200..3145249 13..65 92 <- Plus
arm_2L 3145305..3145448 66..209 100 <- Plus
arm_2L 3145528..3145689 210..371 99   Plus

BO12508.complete Sequence

382 bp assembled on 2006-10-11

GenBank Submission: FJ632460

> BO12508.complete
GAAGTTATCAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGA
CGAACAAGGGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCG
ATTGCCTGCGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGG
CTTCCGTAAGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAG
CTATCGGCGTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTAC
CTGGCCAAAAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGA
CGATTTCCCGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTT
GGGTGCCAGTGCGCGCAAGCTTTCTAGACCAT

BO12508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-RB 351 CG12400-PB 1..348 17..364 1740 100 Plus
CG12400-RA 351 CG12400-PA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-RB 762 CG12400-RB 163..512 15..364 1750 100 Plus
CG12400-RA 458 CG12400-RA 36..385 15..364 1750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3145527..3145686 174..15 800 100 Minus
2L 23513712 2L 3145305..3145449 317..173 725 100 Minus
2L 23513712 2L 3145203..3145250 364..317 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:02:49 has no hits.

BO12508.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:05 Download gff for BO12508.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:00 Download gff for BO12508.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 36..383 17..366 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:36 Download gff for BO12508.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 38..385 17..366 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:05 Download gff for BO12508.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 31..387 12..369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:44 Download gff for BO12508.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 38..385 17..366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:44 Download gff for BO12508.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3145201..3145249 318..366 95 <- Minus
2L 3145305..3145448 174..317 100 <- Minus
2L 3145528..3145684 17..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:36 Download gff for BO12508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3145201..3145249 318..366 95 <- Minus
arm_2L 3145305..3145448 174..317 100 <- Minus
arm_2L 3145528..3145684 17..173 100   Minus

BO12508.pep Sequence

Translation from 16 to 382

> BO12508.pep
MSAVNDPLELLTNKGTHEPSFLSPIWNPIACGVAGVGAAIFINWGFRKPV
FSGIQKHIAFGAIGVGAGAYFDQKRNEYLAKRDAVLRHYIELHPDDFPVK
ERKTYGQVLESWVPVRASFLDH

BO12508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-PB 116 CG12400-PB 1..116 1..116 624 100 Plus
CG12400-PA 116 CG12400-PA 1..116 1..116 624 100 Plus