Clone Sequence Records
BO12509.3prime Sequence
803 bp (802 high quality bases) assembled on 2006-05-08
> BO12509.3prime
ATGGTCTAGAAAGCTTGCCCACCGCTGCTCCACATGCGTGGTGTAGACAA
ATCCCCGGGACCTGGGAGCCTGGATCAGAGGCTGCGATCGCAGGGGAATA
GCCACCGGAATGGAGGAGGGAACTCTAGCCACCACTACAGCAGGTCCCAC
ATTTGCAGTAAAGACCACACTCTCCGAATCCGGCTCATCCTTGGATCCAG
GTTCCGGAGTGGGTTTCAGGGGGTCAGTGCTGACCCCGCAGACCGGGTGA
TCGGCATTGCTGTCGGTGGAGTTGCTGGAGGAGGTTTTCTGCTCCTCCTC
CCTGCTCTGCTCGGTGGGCAGGCGGAAGGCGCGACTTGGTCTGTAGCCGG
CTGGTGGATAAGGAGCTTTTACAAAAGCCCGACCCGTACGGGATTCCACA
GCGAGAGTAGCTGGGAGAGCTGTGGACGTGTCCACGGAGCCCCAGTTGGT
GGTCGTGCTCCAGTCGTCGGTTGGATCTGTAGTGCTGGTCGACAAATCCT
CCAGAGGCAGCTCGGTTGTGGTGGTCAGCTGATTCGTTCCCAAACCTGAG
CCTTCCTGAACCTCAGCTTCAACAGCACCAGGCCCTTCAATGACCTCTAC
TTCCACTTCGCTTGGCAGCCAGAAGGAGCGACCTTGTGGTCTATAGCCCG
CCGCCGGATAGGGAGCATCCTCGGCCGGCTGATCCTCCTGCACAGTGACC
GCATACCGGTTGATCCTGACCTGACGCGCTTCGATCTGGACGGGACTAAG
GGCCCAAAGGCAAAGGATAACGGGTAGAATGGACTGCATGTCGACTGATA
ACT
BO12509.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14572-PA | 774 | CG14572-RA | 1..771 | 789..19 | 3830 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14572-RA | 908 | CG14572-RA | 42..814 | 791..19 | 3850 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21741575..21742347 | 791..19 | 3850 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:27:11 has no hits.
BO12509.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:45 Download gff for
BO12509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-PA | 1..774 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:14 Download gff for
BO12509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-PA | 1..774 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:29:53 Download gff for
BO12509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 36..814 | 19..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:24 Download gff for
BO12509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 36..814 | 19..796 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:24 Download gff for
BO12509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21741569..21742352 | 14..796 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:29:53 Download gff for
BO12509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21734669..21735452 | 14..796 | 99 | -> | Minus |
BO12509.5prime Sequence
803 bp (802 high quality bases) assembled on 2006-05-08
> BO12509.5prime
GAAGTTATCAGTCGACATGCAGTCCATTCTACCCGTTATCCTTTGCCTTT
GGGCCCTTAGTCCCGTCCAGATCGAAGCGCGTCAGGTCAGGATCAACCGG
TATGCGGTCACTGTGCAGGAGGATCAGCCGGCCGAGGATGCTCCCTATCC
GGCGGCGGGCTATAGACCACAAGGTCGCTCCTTCTGGCTGCCAAGCGAAG
TGGAAGTAGAGGTCATTGAAGGGCCTGGTGCTGTTGAAGCTGAGGTTCAG
GAAGGCTCAGGTTTGGGAACGAATCAGCTGACCACCACAACCGAGCTGCC
TCTGGAGGATTTGTCGACCAGCACTACAGATCCAACCGACGACTGGAGCA
CGACCACCAACTGGGGCTCCGTGGACACGTCCACAGCTCTCCCAGCTACT
CTCGCTGTGGAATCCCGTACGGGTCGGGCTTTTGTAAAAGCTCCTTATCC
ACCAGCCGGCTACAGACCAAGTCGCGCCTTCCGCCTGCCCACCGAGCAGA
GCAGGGAGGAGGAGCAGAAAACCTCCTCCAGCAACTCCACCGACAGCAAT
GCCGATCACCCGGTCTGCGGGGTCAGCACTGACCCCCTGAAACCCACTCC
GGAACCTGGATCCAAGGATGAGCCGGATTCGGAGAGTGTGGTCTTTACTG
CAAATGTGGGACCTGCTGTAGTGGTGGCTAGAGTTCCCTCCTCCATTCCG
GTGGCTATTCCCCTGCGATCGCAGCCTCTGATCCAGGCTCCCAGGTCCCG
GGGATTTGTCTACACCACGCATGTGGAGCAGCGGTGGGCAAGCTTTCTAG
ACC
BO12509.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14572-PA | 774 | CG14572-RA | 1..771 | 17..787 | 3830 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14572-RA | 908 | CG14572-RA | 42..814 | 15..787 | 3850 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21741575..21742347 | 15..787 | 3850 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:38:16 has no hits.
BO12509.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:46 Download gff for
BO12509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:16 Download gff for
BO12509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:46 Download gff for
BO12509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 36..814 | 10..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:54 Download gff for
BO12509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 36..814 | 10..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:54 Download gff for
BO12509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21741569..21742352 | 10..792 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:46 Download gff for
BO12509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21734669..21735452 | 10..792 | 99 | -> | Plus |
BO12509.complete Sequence
805 bp assembled on 2006-10-11
GenBank Submission: FJ632461
> BO12509.complete
GAAGTTATCAGTCGACATGCAGTCCATTCTACCCGTTATCCTTTGCCTTT
GGGCCCTTAGTCCCGTCCAGATCGAAGCGCGTCAGGTCAGGATCAACCGG
TATGCGGTCACTGTGCAGGAGGATCAGCCGGCCGAGGATGCTCCCTATCC
GGCGGCGGGCTATAGACCACAAGGTCGCTCCTTCTGGCTGCCAAGCGAAG
TGGAAGTAGAGGTCATTGAAGGGCCTGGTGCTGTTGAAGCTGAGGTTCAG
GAAGGCTCAGGTTTGGGAACGAATCAGCTGACCACCACAACCGAGCTGCC
TCTGGAGGATTTGTCGACCAGCACTACAGATCCAACCGACGACTGGAGCA
CGACCACCAACTGGGGCTCCGTGGACACGTCCACAGCTCTCCCAGCTACT
CTCGCTGTGGAATCCCGTACGGGTCGGGCTTTTGTAAAAGCTCCTTATCC
ACCAGCCGGCTACAGACCAAGTCGCGCCTTCCGCCTGCCCACCGAGCAGA
GCAGGGAGGAGGAGCAGAAAACCTCCTCCAGCAACTCCACCGACAGCAAT
GCCGATCACCCGGTCTGCGGGGTCAGCACTGACCCCCTGAAACCCACTCC
GGAACCTGGATCCAAGGATGAGCCGGATTCGGAGAGTGTGGTCTTTACTG
CAAATGTGGGACCTGCTGTAGTGGTGGCTAGAGTTCCCTCCTCCATTCCG
GTGGCTATTCCCCTGCGATCGCAGCCTCTGATCCAGGCTCCCAGGTCCCG
GGGATTTGTCTACACCACGCATGTGGAGCAGCGGTGGGCAAGCTTTCTAG
ACCAT
BO12509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14572-RA | 774 | CG14572-PA | 1..771 | 17..787 | 3840 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14572-RA | 908 | CG14572-RA | 42..814 | 15..787 | 3850 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21741575..21742347 | 15..787 | 3850 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:06:37 has no hits.
BO12509.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:45 Download gff for
BO12509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:50 Download gff for
BO12509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 31..809 | 10..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:28 Download gff for
BO12509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 44..814 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:45 Download gff for
BO12509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 31..809 | 10..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:09 Download gff for
BO12509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14572-RA | 44..814 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:09 Download gff for
BO12509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21741577..21742347 | 17..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:28 Download gff for
BO12509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21734677..21735447 | 17..789 | 99 | | Plus |
BO12509.pep Sequence
Translation from 16 to 805
> BO12509.pep
MQSILPVILCLWALSPVQIEARQVRINRYAVTVQEDQPAEDAPYPAAGYR
PQGRSFWLPSEVEVEVIEGPGAVEAEVQEGSGLGTNQLTTTTELPLEDLS
TSTTDPTDDWSTTTNWGSVDTSTALPATLAVESRTGRAFVKAPYPPAGYR
PSRAFRLPTEQSREEEQKTSSSNSTDSNADHPVCGVSTDPLKPTPEPGSK
DEPDSESVVFTANVGPAVVVARVPSSIPVAIPLRSQPLIQAPRSRGFVYT
THVEQRWASFLDH
BO12509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14572-PA | 257 | CG14572-PA | 1..257 | 1..257 | 1337 | 100 | Plus |