Clone BO12509 Report

Search the DGRC for BO12509

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG14572-RA
Protein status:BO12509.pep: validated full length
Sequenced Size:805

Clone Sequence Records

BO12509.3prime Sequence

803 bp (802 high quality bases) assembled on 2006-05-08

> BO12509.3prime
ATGGTCTAGAAAGCTTGCCCACCGCTGCTCCACATGCGTGGTGTAGACAA
ATCCCCGGGACCTGGGAGCCTGGATCAGAGGCTGCGATCGCAGGGGAATA
GCCACCGGAATGGAGGAGGGAACTCTAGCCACCACTACAGCAGGTCCCAC
ATTTGCAGTAAAGACCACACTCTCCGAATCCGGCTCATCCTTGGATCCAG
GTTCCGGAGTGGGTTTCAGGGGGTCAGTGCTGACCCCGCAGACCGGGTGA
TCGGCATTGCTGTCGGTGGAGTTGCTGGAGGAGGTTTTCTGCTCCTCCTC
CCTGCTCTGCTCGGTGGGCAGGCGGAAGGCGCGACTTGGTCTGTAGCCGG
CTGGTGGATAAGGAGCTTTTACAAAAGCCCGACCCGTACGGGATTCCACA
GCGAGAGTAGCTGGGAGAGCTGTGGACGTGTCCACGGAGCCCCAGTTGGT
GGTCGTGCTCCAGTCGTCGGTTGGATCTGTAGTGCTGGTCGACAAATCCT
CCAGAGGCAGCTCGGTTGTGGTGGTCAGCTGATTCGTTCCCAAACCTGAG
CCTTCCTGAACCTCAGCTTCAACAGCACCAGGCCCTTCAATGACCTCTAC
TTCCACTTCGCTTGGCAGCCAGAAGGAGCGACCTTGTGGTCTATAGCCCG
CCGCCGGATAGGGAGCATCCTCGGCCGGCTGATCCTCCTGCACAGTGACC
GCATACCGGTTGATCCTGACCTGACGCGCTTCGATCTGGACGGGACTAAG
GGCCCAAAGGCAAAGGATAACGGGTAGAATGGACTGCATGTCGACTGATA
ACT

BO12509.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14572-PA 774 CG14572-RA 1..771 789..19 3830 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14572-RA 908 CG14572-RA 42..814 791..19 3850 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21741575..21742347 791..19 3850 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 15:27:11 has no hits.

BO12509.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:45 Download gff for BO12509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14572-PA 1..774 16..789 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:14 Download gff for BO12509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14572-PA 1..774 16..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:29:53 Download gff for BO12509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 36..814 19..796 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:24 Download gff for BO12509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 36..814 19..796 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:24 Download gff for BO12509.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21741569..21742352 14..796 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:29:53 Download gff for BO12509.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21734669..21735452 14..796 99 -> Minus

BO12509.5prime Sequence

803 bp (802 high quality bases) assembled on 2006-05-08

> BO12509.5prime
GAAGTTATCAGTCGACATGCAGTCCATTCTACCCGTTATCCTTTGCCTTT
GGGCCCTTAGTCCCGTCCAGATCGAAGCGCGTCAGGTCAGGATCAACCGG
TATGCGGTCACTGTGCAGGAGGATCAGCCGGCCGAGGATGCTCCCTATCC
GGCGGCGGGCTATAGACCACAAGGTCGCTCCTTCTGGCTGCCAAGCGAAG
TGGAAGTAGAGGTCATTGAAGGGCCTGGTGCTGTTGAAGCTGAGGTTCAG
GAAGGCTCAGGTTTGGGAACGAATCAGCTGACCACCACAACCGAGCTGCC
TCTGGAGGATTTGTCGACCAGCACTACAGATCCAACCGACGACTGGAGCA
CGACCACCAACTGGGGCTCCGTGGACACGTCCACAGCTCTCCCAGCTACT
CTCGCTGTGGAATCCCGTACGGGTCGGGCTTTTGTAAAAGCTCCTTATCC
ACCAGCCGGCTACAGACCAAGTCGCGCCTTCCGCCTGCCCACCGAGCAGA
GCAGGGAGGAGGAGCAGAAAACCTCCTCCAGCAACTCCACCGACAGCAAT
GCCGATCACCCGGTCTGCGGGGTCAGCACTGACCCCCTGAAACCCACTCC
GGAACCTGGATCCAAGGATGAGCCGGATTCGGAGAGTGTGGTCTTTACTG
CAAATGTGGGACCTGCTGTAGTGGTGGCTAGAGTTCCCTCCTCCATTCCG
GTGGCTATTCCCCTGCGATCGCAGCCTCTGATCCAGGCTCCCAGGTCCCG
GGGATTTGTCTACACCACGCATGTGGAGCAGCGGTGGGCAAGCTTTCTAG
ACC

BO12509.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14572-PA 774 CG14572-RA 1..771 17..787 3830 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14572-RA 908 CG14572-RA 42..814 15..787 3850 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21741575..21742347 15..787 3850 99.9 Plus
Blast to na_te.dros performed on 2015-02-13 08:38:16 has no hits.

BO12509.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:46 Download gff for BO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14572-PA 1..774 17..790 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:16 Download gff for BO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14572-PA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:46 Download gff for BO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 36..814 10..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:54 Download gff for BO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 36..814 10..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:54 Download gff for BO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21741569..21742352 10..792 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:46 Download gff for BO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21734669..21735452 10..792 99 -> Plus

BO12509.complete Sequence

805 bp assembled on 2006-10-11

GenBank Submission: FJ632461

> BO12509.complete
GAAGTTATCAGTCGACATGCAGTCCATTCTACCCGTTATCCTTTGCCTTT
GGGCCCTTAGTCCCGTCCAGATCGAAGCGCGTCAGGTCAGGATCAACCGG
TATGCGGTCACTGTGCAGGAGGATCAGCCGGCCGAGGATGCTCCCTATCC
GGCGGCGGGCTATAGACCACAAGGTCGCTCCTTCTGGCTGCCAAGCGAAG
TGGAAGTAGAGGTCATTGAAGGGCCTGGTGCTGTTGAAGCTGAGGTTCAG
GAAGGCTCAGGTTTGGGAACGAATCAGCTGACCACCACAACCGAGCTGCC
TCTGGAGGATTTGTCGACCAGCACTACAGATCCAACCGACGACTGGAGCA
CGACCACCAACTGGGGCTCCGTGGACACGTCCACAGCTCTCCCAGCTACT
CTCGCTGTGGAATCCCGTACGGGTCGGGCTTTTGTAAAAGCTCCTTATCC
ACCAGCCGGCTACAGACCAAGTCGCGCCTTCCGCCTGCCCACCGAGCAGA
GCAGGGAGGAGGAGCAGAAAACCTCCTCCAGCAACTCCACCGACAGCAAT
GCCGATCACCCGGTCTGCGGGGTCAGCACTGACCCCCTGAAACCCACTCC
GGAACCTGGATCCAAGGATGAGCCGGATTCGGAGAGTGTGGTCTTTACTG
CAAATGTGGGACCTGCTGTAGTGGTGGCTAGAGTTCCCTCCTCCATTCCG
GTGGCTATTCCCCTGCGATCGCAGCCTCTGATCCAGGCTCCCAGGTCCCG
GGGATTTGTCTACACCACGCATGTGGAGCAGCGGTGGGCAAGCTTTCTAG
ACCAT

BO12509.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14572-RA 774 CG14572-PA 1..771 17..787 3840 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14572-RA 908 CG14572-RA 42..814 15..787 3850 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21741575..21742347 15..787 3850 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 07:06:37 has no hits.

BO12509.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:45 Download gff for BO12509.complete
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:50 Download gff for BO12509.complete
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 31..809 10..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:28 Download gff for BO12509.complete
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 44..814 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:45 Download gff for BO12509.complete
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 31..809 10..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:09 Download gff for BO12509.complete
Subject Subject Range Query Range Percent Splice Strand
CG14572-RA 44..814 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:09 Download gff for BO12509.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21741577..21742347 17..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:28 Download gff for BO12509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21734677..21735447 17..789 99   Plus

BO12509.pep Sequence

Translation from 16 to 805

> BO12509.pep
MQSILPVILCLWALSPVQIEARQVRINRYAVTVQEDQPAEDAPYPAAGYR
PQGRSFWLPSEVEVEVIEGPGAVEAEVQEGSGLGTNQLTTTTELPLEDLS
TSTTDPTDDWSTTTNWGSVDTSTALPATLAVESRTGRAFVKAPYPPAGYR
PSRAFRLPTEQSREEEQKTSSSNSTDSNADHPVCGVSTDPLKPTPEPGSK
DEPDSESVVFTANVGPAVVVARVPSSIPVAIPLRSQPLIQAPRSRGFVYT
THVEQRWASFLDH

BO12509.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14572-PA 257 CG14572-PA 1..257 1..257 1337 100 Plus