Clone BO12510 Report

Search the DGRC for BO12510

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptswi2-RA
Protein status:BO12510.pep: validated full length
Sequenced Size:1531

Clone Sequence Records

BO12510.3prime Sequence

873 bp (838 high quality bases) assembled on 2006-05-08

> BO12510.3prime
ATGGTCTAGAAAGCTTGCGGGCATTTTCATCACAATCCAAGGAACTCGAC
CGTAATACTTGTAGTAGTAGTAATCGTAGGCAAGCTTGCCCAGGATAAGA
AATATGAGGCTGGCCAGCACCCCGTTTAGCCAATCGATGGGATGGATCTG
AGTGCCGCCCTCCACGCTTAAATTGCACATCTCCTGGCGACTGAGGGTCA
GCACCTTGGCCAGCAGCTGGTCGTCATCCAGGCGGTAGGTGCAGCTCACA
TTCCAGGCATCACGCACGATGTCCTTGTACTTCGTCAACAGCTCACGCAT
TCTGCTGCCAAACTTGCAGGTGCAGTGCCAGGGATTTCGACTTAGCAATA
GCAGATTGGCATTCTCGTTGTCATCCAGAGCGTTGTCCAGGGCGTAGACA
TGAAGCTTGCGCAGATTGTTGCCACGCAGATTGAGCAAGCGGAAGTTCTG
CAGCCAGTAAGTGTCCTCCAAGTTGTCCACATTGGATATCTGATTGTTCT
CCAGCTGCATATCCACAACGTGGCGGTAGTGGGGATTGTCCCGCAGCGGA
TTTATGTCACTGATCATATTATCGTTTATAACTAAAGTGGTGGTGTTGTC
CGGCAAAAAGTCAGGCAAGCGATGGAACTGCAAATGGGAACAGTTGACCG
TATAGAGCGGTATGTGAGTCTTGGGTAAGATGTGATGCATTAGGCAAGTG
CAGTTCCTTAGATCCTCATGCGATTGGCATTGTCTCTTCAGCTCCAGTTT
GTAGTGCATGACCATGAGCATCTGGCGTTCCTTATACTTTCGATCTGTGC
ATATTAGTTCGTCGCGATCCACCACCAGGCGTCCCTTTTCCGGCTGCAGC
AGCAACCACTTGAAGTTGCGCGT

BO12510.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14485-PA 1500 swi2-RA 643..1497 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
swi2-RA 2582 CG14485-RA 912..1766 873..19 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17691091..17691637 19..565 2735 100 Plus
2R 25286936 2R 17691704..17691884 565..745 905 100 Plus
2R 25286936 2R 17691942..17692071 744..873 650 100 Plus
Blast to na_te.dros performed on 2015-02-02 20:45:21 has no hits.

BO12510.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:47 Download gff for BO12510.3prime
Subject Subject Range Query Range Percent Splice Strand
swi2-PA 643..1500 18..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:17 Download gff for BO12510.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14485-PA 643..1500 18..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:26:19 Download gff for BO12510.3prime
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 912..1766 19..873 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:18:05 Download gff for BO12510.3prime
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 912..1766 19..873 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:18:05 Download gff for BO12510.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17691091..17691636 19..564 100 <- Plus
2R 17691704..17691883 565..744 100 <- Plus
2R 17691943..17692071 745..873 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:26:19 Download gff for BO12510.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13578596..13579141 19..564 100 <- Plus
arm_2R 13579209..13579388 565..744 100 <- Plus
arm_2R 13579448..13579576 745..873 100   Plus

BO12510.5prime Sequence

879 bp (816 high quality bases) assembled on 2006-05-08

> BO12510.5prime
GAAGTTATCAGTCGACATGCCTAGCGGTGTTTTTCAAAAACGGCCAAAAG
CAGCCGAAACTATTTCGCTGTTCTGCATGATCTTAATAAGGCTGAGCCGT
GCCGCGGATGACAGCCATGAGACGAGCACTTTGTTAGCCACCATCACTAC
CATAACCACCGAGATCATTCCGATGCCCGATTCTGGGCGCAGCTGCTTCG
GTTGGTCCTCCGCGCCGGAGGCAGCGGGCGGCAACTGCTCCAGATCGAAC
CGGAATGGAACACTTAAGTGCTATGGCGGAATGAATAACCTGGCTGCGCT
GAACCAATCTGGAAAGTTGAGTAGAGTCCAGCCCGCACTGGAAATGCTTC
TGTGCGGCTGGCCAAAGGATGGTCTAAATCATTTCAGGGATCTTCAGAAA
TTGCCTCGCCTTCGATCACTGACCATCGAGTACAGTGGCTTCACCGAATT
CAAATTCGACTTTCCCGAAATGTTGGAGCTACATACTATCAACATTTCGT
GGACGAATCTCTCGTACATCTCATCGCGAACCTTCAAACGTGTGCATCCG
CTCAAGGTCTTAGATCTGCGATGGAACCAGCTCATTCAACTGGATGGACC
ACTGTTGCTGCCCCGCAATTTCGAGCAACTCTATCTGGCGGGCAATCCGT
GGAACTGTACGCGCAACTTCAAGTGGTTGCTGCTGCAGCCGGAAAAGGGA
CGCCTGGTGGTGGATCGCGACGAACTAATATGCACAGATCGAAAGTATAA
GGAACGCCAGATGCTCATGGTCATGCACTACAAACTGGAGCTGAAGAGAC
AATGCCAATCGCATGAGGATCTAAGGAACTGCACTTGCCTAATGCATCAC
ATCTTACCCAAGACTCACATACCGCTCTA

BO12510.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14485-PA 1500 swi2-RA 1..863 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
swi2-RA 2582 CG14485-RA 270..1132 17..879 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17691942..17692426 788..304 2425 100 Minus
2R 25286936 2R 17692579..17692793 303..89 1075 100 Minus
2R 25286936 2R 17691792..17691884 879..787 465 100 Minus
2R 25286936 2R 17695010..17695084 91..17 375 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:16:22 has no hits.

BO12510.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:48 Download gff for BO12510.5prime
Subject Subject Range Query Range Percent Splice Strand
swi2-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:19 Download gff for BO12510.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14485-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:01 Download gff for BO12510.5prime
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 270..1131 17..878 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:00 Download gff for BO12510.5prime
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 270..1131 17..878 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:00 Download gff for BO12510.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17691793..17691883 788..878 100 <- Minus
2R 17691943..17692426 304..787 100 <- Minus
2R 17692579..17692791 91..303 100 <- Minus
2R 17695011..17695084 17..90 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:01 Download gff for BO12510.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13579298..13579388 788..878 100 <- Minus
arm_2R 13579448..13579931 304..787 100 <- Minus
arm_2R 13580084..13580296 91..303 100 <- Minus
arm_2R 13582516..13582589 17..90 100   Minus

BO12510.complete Sequence

1531 bp assembled on 2006-10-11

GenBank Submission: FJ632462

> BO12510.complete
GAAGTTATCAGTCGACATGCCTAGCGGTGTTTTTCAAAAACGGCCAAAAG
CAGCCGAAACTATTTCGCTGTTCTGCATGATCTTAATAAGGCTGAGCCGT
GCCGCGGATGACAGCCATGAGACGAGCACTTTGTTAGCCACCATCACTAC
CATAACCACCGAGATCATTCCGATGCCCGATTCTGGGCGCAGCTGCTTCG
GTTGGTCCTCCGCGCCGGAGGCAGCGGGCGGCAACTGCTCCAGATCGAAC
CGGAATGGAACACTTAAGTGCTATGGCGGAATGAATAACCTGGCTGCGCT
GAACCAATCTGGAAAGTTGAGTAGAGTCCAGCCCGCACTGGAAATGCTTC
TGTGCGGCTGGCCAAAGGATGGTCTAAATCATTTCAGGGATCTTCAGAAA
TTGCCTCGCCTTCGATCACTGACCATCGAGTACAGTGGCTTCACCGAATT
CAAATTCGACTTTCCCGAAATGTTGGAGCTACATACTATCAACATTTCGT
GGACGAATCTCTCGTACATCTCATCGCGAACCTTCAAACGTGTGCATCCG
CTCAAGGTCTTAGATCTGCGATGGAACCAGCTCATTCAACTGGATGGACC
ACTGTTGCTGCCCCGCAATTTCGAGCAACTCTATCTGGCGGGCAATCCGT
GGAACTGTACGCGCAACTTCAAGTGGTTGCTGCTGCAGCCGGAAAAGGGA
CGCCTGGTGGTGGATCGCGACGAACTAATATGCACAGATCGAAAGTATAA
GGAACGCCAGATGCTCATGGTCATGCACTACAAACTGGAGCTGAAGAGAC
AATGCCAATCGCATGAGGATCTAAGGAACTGCACTTGCCTAATGCATCAC
ATCTTACCCAAGACTCACATACCGCTCTATACGGTCAACTGTTCCCATTT
GCAGTTCCATCGCTTGCCTGACTTTTTGCCGGACAACACCACCACTTTAG
TTATAAACGATAATATGATCAGTGACATAAATCCGCTGCGGGACAATCCC
CACTACCGCCACGTTGTGGATATGCAGCTGGAGAACAATCAGATATCCAA
TGTGGACAACTTGGAGGACACTTACTGGCTGCAGAACTTCCGCTTGCTCA
ATCTGCGTGGCAACAATCTGCGCAAGCTTCATGTCTACGCCCTGGACAAC
GCTCTGGATGACAACGAGAATGCCAATCTGCTATTGCTAAGTCGAAATCC
CTGGCACTGCACCTGCAAGTTTGGCAGCAGAATGCGTGAGCTGTTGACGA
AGTACAAGGACATCGTGCGTGATGCCTGGAATGTGAGCTGCACCTACCGC
CTGGATGACGACCAGCTGCTGGCCAAGGTGCTGACCCTCAGTCGCCAGGA
GATGTGCAATTTAAGCGTGGAGGGCGGCACTCAGATCCATCCCATCGATT
GGCTAAACGGGGTGCTGGCCAGCCTCATATTTCTTATCCTGGGCAAGCTT
GCCTACGATTACTACTACTACAAGTATTACGGTCGAGTTCCTTGGATTGT
GATGAAAATGCCCGCAAGCTTTCTAGACCAT

BO12510.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
swi2-RA 1500 CG14485-PA 1..1497 17..1513 7485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
swi2-RA 2582 CG14485-RA 270..1766 17..1513 7485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17691091..17691637 1513..967 2735 100 Minus
2R 25286936 2R 17691942..17692426 788..304 2425 100 Minus
2R 25286936 2R 17692579..17692793 303..89 1075 100 Minus
2R 25286936 2R 17691704..17691884 967..787 905 100 Minus
2R 25286936 2R 17695010..17695084 91..17 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:14:48 has no hits.

BO12510.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:47 Download gff for BO12510.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 1..1500 17..1514 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:54 Download gff for BO12510.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 268..1764 17..1513 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:43 Download gff for BO12510.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 270..1766 17..1515 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:47 Download gff for BO12510.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 268..1764 17..1513 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:46 Download gff for BO12510.complete
Subject Subject Range Query Range Percent Splice Strand
swi2-RA 270..1766 17..1515 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:46 Download gff for BO12510.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17692579..17692791 91..303 100 <- Minus
2R 17695011..17695084 17..90 100   Minus
2R 17691089..17691636 968..1515 99 <- Minus
2R 17691704..17691883 788..967 100 <- Minus
2R 17691943..17692426 304..787 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:43 Download gff for BO12510.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13578594..13579141 968..1515 99 <- Minus
arm_2R 13579209..13579388 788..967 100 <- Minus
arm_2R 13579448..13579931 304..787 100 <- Minus
arm_2R 13580084..13580296 91..303 100 <- Minus
arm_2R 13582516..13582589 17..90 100   Minus

BO12510.pep Sequence

Translation from 16 to 1531

> BO12510.pep
MPSGVFQKRPKAAETISLFCMILIRLSRAADDSHETSTLLATITTITTEI
IPMPDSGRSCFGWSSAPEAAGGNCSRSNRNGTLKCYGGMNNLAALNQSGK
LSRVQPALEMLLCGWPKDGLNHFRDLQKLPRLRSLTIEYSGFTEFKFDFP
EMLELHTINISWTNLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPR
NFEQLYLAGNPWNCTRNFKWLLLQPEKGRLVVDRDELICTDRKYKERQML
MVMHYKLELKRQCQSHEDLRNCTCLMHHILPKTHIPLYTVNCSHLQFHRL
PDFLPDNTTTLVINDNMISDINPLRDNPHYRHVVDMQLENNQISNVDNLE
DTYWLQNFRLLNLRGNNLRKLHVYALDNALDDNENANLLLLSRNPWHCTC
KFGSRMRELLTKYKDIVRDAWNVSCTYRLDDDQLLAKVLTLSRQEMCNLS
VEGGTQIHPIDWLNGVLASLIFLILGKLAYDYYYYKYYGRVPWIVMKMPA
SFLDH

BO12510.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
swi2-PA 499 CG14485-PA 1..499 1..499 2692 100 Plus
hfw-PB 611 CG3095-PB 237..601 132..499 286 25.7 Plus
hfw-PA 611 CG3095-PA 237..601 132..499 286 25.7 Plus