Clone Sequence Records
BO12510.3prime Sequence
873 bp (838 high quality bases) assembled on 2006-05-08
> BO12510.3prime
ATGGTCTAGAAAGCTTGCGGGCATTTTCATCACAATCCAAGGAACTCGAC
CGTAATACTTGTAGTAGTAGTAATCGTAGGCAAGCTTGCCCAGGATAAGA
AATATGAGGCTGGCCAGCACCCCGTTTAGCCAATCGATGGGATGGATCTG
AGTGCCGCCCTCCACGCTTAAATTGCACATCTCCTGGCGACTGAGGGTCA
GCACCTTGGCCAGCAGCTGGTCGTCATCCAGGCGGTAGGTGCAGCTCACA
TTCCAGGCATCACGCACGATGTCCTTGTACTTCGTCAACAGCTCACGCAT
TCTGCTGCCAAACTTGCAGGTGCAGTGCCAGGGATTTCGACTTAGCAATA
GCAGATTGGCATTCTCGTTGTCATCCAGAGCGTTGTCCAGGGCGTAGACA
TGAAGCTTGCGCAGATTGTTGCCACGCAGATTGAGCAAGCGGAAGTTCTG
CAGCCAGTAAGTGTCCTCCAAGTTGTCCACATTGGATATCTGATTGTTCT
CCAGCTGCATATCCACAACGTGGCGGTAGTGGGGATTGTCCCGCAGCGGA
TTTATGTCACTGATCATATTATCGTTTATAACTAAAGTGGTGGTGTTGTC
CGGCAAAAAGTCAGGCAAGCGATGGAACTGCAAATGGGAACAGTTGACCG
TATAGAGCGGTATGTGAGTCTTGGGTAAGATGTGATGCATTAGGCAAGTG
CAGTTCCTTAGATCCTCATGCGATTGGCATTGTCTCTTCAGCTCCAGTTT
GTAGTGCATGACCATGAGCATCTGGCGTTCCTTATACTTTCGATCTGTGC
ATATTAGTTCGTCGCGATCCACCACCAGGCGTCCCTTTTCCGGCTGCAGC
AGCAACCACTTGAAGTTGCGCGT
BO12510.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14485-PA | 1500 | swi2-RA | 643..1497 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swi2-RA | 2582 | CG14485-RA | 912..1766 | 873..19 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17691091..17691637 | 19..565 | 2735 | 100 | Plus |
2R | 25286936 | 2R | 17691704..17691884 | 565..745 | 905 | 100 | Plus |
2R | 25286936 | 2R | 17691942..17692071 | 744..873 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:45:21 has no hits.
BO12510.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:47 Download gff for
BO12510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-PA | 643..1500 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:17 Download gff for
BO12510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14485-PA | 643..1500 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:26:19 Download gff for
BO12510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 912..1766 | 19..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:18:05 Download gff for
BO12510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 912..1766 | 19..873 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:18:05 Download gff for
BO12510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17691091..17691636 | 19..564 | 100 | <- | Plus |
2R | 17691704..17691883 | 565..744 | 100 | <- | Plus |
2R | 17691943..17692071 | 745..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:26:19 Download gff for
BO12510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13578596..13579141 | 19..564 | 100 | <- | Plus |
arm_2R | 13579209..13579388 | 565..744 | 100 | <- | Plus |
arm_2R | 13579448..13579576 | 745..873 | 100 | | Plus |
BO12510.5prime Sequence
879 bp (816 high quality bases) assembled on 2006-05-08
> BO12510.5prime
GAAGTTATCAGTCGACATGCCTAGCGGTGTTTTTCAAAAACGGCCAAAAG
CAGCCGAAACTATTTCGCTGTTCTGCATGATCTTAATAAGGCTGAGCCGT
GCCGCGGATGACAGCCATGAGACGAGCACTTTGTTAGCCACCATCACTAC
CATAACCACCGAGATCATTCCGATGCCCGATTCTGGGCGCAGCTGCTTCG
GTTGGTCCTCCGCGCCGGAGGCAGCGGGCGGCAACTGCTCCAGATCGAAC
CGGAATGGAACACTTAAGTGCTATGGCGGAATGAATAACCTGGCTGCGCT
GAACCAATCTGGAAAGTTGAGTAGAGTCCAGCCCGCACTGGAAATGCTTC
TGTGCGGCTGGCCAAAGGATGGTCTAAATCATTTCAGGGATCTTCAGAAA
TTGCCTCGCCTTCGATCACTGACCATCGAGTACAGTGGCTTCACCGAATT
CAAATTCGACTTTCCCGAAATGTTGGAGCTACATACTATCAACATTTCGT
GGACGAATCTCTCGTACATCTCATCGCGAACCTTCAAACGTGTGCATCCG
CTCAAGGTCTTAGATCTGCGATGGAACCAGCTCATTCAACTGGATGGACC
ACTGTTGCTGCCCCGCAATTTCGAGCAACTCTATCTGGCGGGCAATCCGT
GGAACTGTACGCGCAACTTCAAGTGGTTGCTGCTGCAGCCGGAAAAGGGA
CGCCTGGTGGTGGATCGCGACGAACTAATATGCACAGATCGAAAGTATAA
GGAACGCCAGATGCTCATGGTCATGCACTACAAACTGGAGCTGAAGAGAC
AATGCCAATCGCATGAGGATCTAAGGAACTGCACTTGCCTAATGCATCAC
ATCTTACCCAAGACTCACATACCGCTCTA
BO12510.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14485-PA | 1500 | swi2-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swi2-RA | 2582 | CG14485-RA | 270..1132 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17691942..17692426 | 788..304 | 2425 | 100 | Minus |
2R | 25286936 | 2R | 17692579..17692793 | 303..89 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 17691792..17691884 | 879..787 | 465 | 100 | Minus |
2R | 25286936 | 2R | 17695010..17695084 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:16:22 has no hits.
BO12510.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:48 Download gff for
BO12510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:19 Download gff for
BO12510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14485-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:01 Download gff for
BO12510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 270..1131 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:00 Download gff for
BO12510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 270..1131 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:00 Download gff for
BO12510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17691793..17691883 | 788..878 | 100 | <- | Minus |
2R | 17691943..17692426 | 304..787 | 100 | <- | Minus |
2R | 17692579..17692791 | 91..303 | 100 | <- | Minus |
2R | 17695011..17695084 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:01 Download gff for
BO12510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13579298..13579388 | 788..878 | 100 | <- | Minus |
arm_2R | 13579448..13579931 | 304..787 | 100 | <- | Minus |
arm_2R | 13580084..13580296 | 91..303 | 100 | <- | Minus |
arm_2R | 13582516..13582589 | 17..90 | 100 | | Minus |
BO12510.complete Sequence
1531 bp assembled on 2006-10-11
GenBank Submission: FJ632462
> BO12510.complete
GAAGTTATCAGTCGACATGCCTAGCGGTGTTTTTCAAAAACGGCCAAAAG
CAGCCGAAACTATTTCGCTGTTCTGCATGATCTTAATAAGGCTGAGCCGT
GCCGCGGATGACAGCCATGAGACGAGCACTTTGTTAGCCACCATCACTAC
CATAACCACCGAGATCATTCCGATGCCCGATTCTGGGCGCAGCTGCTTCG
GTTGGTCCTCCGCGCCGGAGGCAGCGGGCGGCAACTGCTCCAGATCGAAC
CGGAATGGAACACTTAAGTGCTATGGCGGAATGAATAACCTGGCTGCGCT
GAACCAATCTGGAAAGTTGAGTAGAGTCCAGCCCGCACTGGAAATGCTTC
TGTGCGGCTGGCCAAAGGATGGTCTAAATCATTTCAGGGATCTTCAGAAA
TTGCCTCGCCTTCGATCACTGACCATCGAGTACAGTGGCTTCACCGAATT
CAAATTCGACTTTCCCGAAATGTTGGAGCTACATACTATCAACATTTCGT
GGACGAATCTCTCGTACATCTCATCGCGAACCTTCAAACGTGTGCATCCG
CTCAAGGTCTTAGATCTGCGATGGAACCAGCTCATTCAACTGGATGGACC
ACTGTTGCTGCCCCGCAATTTCGAGCAACTCTATCTGGCGGGCAATCCGT
GGAACTGTACGCGCAACTTCAAGTGGTTGCTGCTGCAGCCGGAAAAGGGA
CGCCTGGTGGTGGATCGCGACGAACTAATATGCACAGATCGAAAGTATAA
GGAACGCCAGATGCTCATGGTCATGCACTACAAACTGGAGCTGAAGAGAC
AATGCCAATCGCATGAGGATCTAAGGAACTGCACTTGCCTAATGCATCAC
ATCTTACCCAAGACTCACATACCGCTCTATACGGTCAACTGTTCCCATTT
GCAGTTCCATCGCTTGCCTGACTTTTTGCCGGACAACACCACCACTTTAG
TTATAAACGATAATATGATCAGTGACATAAATCCGCTGCGGGACAATCCC
CACTACCGCCACGTTGTGGATATGCAGCTGGAGAACAATCAGATATCCAA
TGTGGACAACTTGGAGGACACTTACTGGCTGCAGAACTTCCGCTTGCTCA
ATCTGCGTGGCAACAATCTGCGCAAGCTTCATGTCTACGCCCTGGACAAC
GCTCTGGATGACAACGAGAATGCCAATCTGCTATTGCTAAGTCGAAATCC
CTGGCACTGCACCTGCAAGTTTGGCAGCAGAATGCGTGAGCTGTTGACGA
AGTACAAGGACATCGTGCGTGATGCCTGGAATGTGAGCTGCACCTACCGC
CTGGATGACGACCAGCTGCTGGCCAAGGTGCTGACCCTCAGTCGCCAGGA
GATGTGCAATTTAAGCGTGGAGGGCGGCACTCAGATCCATCCCATCGATT
GGCTAAACGGGGTGCTGGCCAGCCTCATATTTCTTATCCTGGGCAAGCTT
GCCTACGATTACTACTACTACAAGTATTACGGTCGAGTTCCTTGGATTGT
GATGAAAATGCCCGCAAGCTTTCTAGACCAT
BO12510.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swi2-RA | 1500 | CG14485-PA | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swi2-RA | 2582 | CG14485-RA | 270..1766 | 17..1513 | 7485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17691091..17691637 | 1513..967 | 2735 | 100 | Minus |
2R | 25286936 | 2R | 17691942..17692426 | 788..304 | 2425 | 100 | Minus |
2R | 25286936 | 2R | 17692579..17692793 | 303..89 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 17691704..17691884 | 967..787 | 905 | 100 | Minus |
2R | 25286936 | 2R | 17695010..17695084 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:14:48 has no hits.
BO12510.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:47 Download gff for
BO12510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 1..1500 | 17..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:54 Download gff for
BO12510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 268..1764 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:43 Download gff for
BO12510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 270..1766 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:47 Download gff for
BO12510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 268..1764 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:46 Download gff for
BO12510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swi2-RA | 270..1766 | 17..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:46 Download gff for
BO12510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17692579..17692791 | 91..303 | 100 | <- | Minus |
2R | 17695011..17695084 | 17..90 | 100 | | Minus |
2R | 17691089..17691636 | 968..1515 | 99 | <- | Minus |
2R | 17691704..17691883 | 788..967 | 100 | <- | Minus |
2R | 17691943..17692426 | 304..787 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:43 Download gff for
BO12510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13578594..13579141 | 968..1515 | 99 | <- | Minus |
arm_2R | 13579209..13579388 | 788..967 | 100 | <- | Minus |
arm_2R | 13579448..13579931 | 304..787 | 100 | <- | Minus |
arm_2R | 13580084..13580296 | 91..303 | 100 | <- | Minus |
arm_2R | 13582516..13582589 | 17..90 | 100 | | Minus |
BO12510.pep Sequence
Translation from 16 to 1531
> BO12510.pep
MPSGVFQKRPKAAETISLFCMILIRLSRAADDSHETSTLLATITTITTEI
IPMPDSGRSCFGWSSAPEAAGGNCSRSNRNGTLKCYGGMNNLAALNQSGK
LSRVQPALEMLLCGWPKDGLNHFRDLQKLPRLRSLTIEYSGFTEFKFDFP
EMLELHTINISWTNLSYISSRTFKRVHPLKVLDLRWNQLIQLDGPLLLPR
NFEQLYLAGNPWNCTRNFKWLLLQPEKGRLVVDRDELICTDRKYKERQML
MVMHYKLELKRQCQSHEDLRNCTCLMHHILPKTHIPLYTVNCSHLQFHRL
PDFLPDNTTTLVINDNMISDINPLRDNPHYRHVVDMQLENNQISNVDNLE
DTYWLQNFRLLNLRGNNLRKLHVYALDNALDDNENANLLLLSRNPWHCTC
KFGSRMRELLTKYKDIVRDAWNVSCTYRLDDDQLLAKVLTLSRQEMCNLS
VEGGTQIHPIDWLNGVLASLIFLILGKLAYDYYYYKYYGRVPWIVMKMPA
SFLDH
BO12510.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swi2-PA | 499 | CG14485-PA | 1..499 | 1..499 | 2692 | 100 | Plus |
hfw-PB | 611 | CG3095-PB | 237..601 | 132..499 | 286 | 25.7 | Plus |
hfw-PA | 611 | CG3095-PA | 237..601 | 132..499 | 286 | 25.7 | Plus |