Clone BO12514 Report

Search the DGRC for BO12514

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptPnn-RA
Protein status:BO12514.pep: validated full length
Sequenced Size:943

Clone Sequence Records

BO12514.3prime Sequence

875 bp (841 high quality bases) assembled on 2006-05-08

> BO12514.3prime
ATGGTCTAGAAAGCTTGCCTTACACTTATCCAACTGCTCTTCGTCGTCAG
GCTCTTCATAGAAACTTTCGTCTATTGCAGTATCGTCTTCCATCTTCCCA
AAGTTCATGTTCTCCAAGTTTTTAAGCTCAACTTCCAATTCTTCGCGCCG
GAATTCTATAAACACATCAGCTTCACTTTTGCTTTTGCTCAACAATTTTT
CCGTTCTAGGCGAATGCACTTTTGGCCTAAAGAACAGATGTGGTTTCGTT
TTTGTTCGGATGTTATTTTTCGCATTCAACATAGTTGCTTCCCAGACCTT
GAAGTCCTTCATTCTGGCCATTTTGTACTCTAATCTACGGATCTCGAATT
GCTTTTTTTTCCTATCTAAGAATAGTGTTTCACGCTGTTTCCTCAGCATC
GCTCTTTCCTGCAGTTCCTGCTTTTCCACCTTCCTATCGATCTCAGCCTT
TTTATCCTCCTTGCTCTTCAGTCGCGATTCCTCCTGACAGAACTTCTGTA
GGGTTCCCAACAGCGATCCGAACATCCTGCGATTCCTGGCCCTCGACTCA
GAGTCTGTGCCCTGTGCCTCGACAATCTCCTTTTTAGTTGGCATCTCCCG
GATGACCCGCGAGTTAATCCGTGGCGGACGACCCTCGTTTTCTTCGATTG
GGAAACGGGAAATTGGATTCTTGCTTTCGTACATTCGCCGCTTGTCTTTG
AAGACCCCACCGGGTGTTGCATTTCGGGGGAACGGTCGGTCCCCATTGTG
CTCGTTCTTCTTGCCATCTTGGGTGTATTTGAATTTTTCCGATCTCTGCA
GGGATTCCTTGGGGACGCGACCAGCAATGCGGCGAATGTTTTCATTTAGG
ATCACCAGCGACTGCTTGGCCGAAT

BO12514.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8383-PA 912 Pnn-RA 53..909 875..19 4285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-RA 1202 CG8383-RA 163..1019 875..19 4285 100 Minus
Pnn-RB 1659 CG8383-RB 163..1014 875..24 4260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9741197..9741973 795..19 3885 100 Minus
3R 32079331 3R 9741061..9741142 875..794 410 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:46:51 has no hits.

BO12514.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:54 Download gff for BO12514.3prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-PA 53..912 15..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:27 Download gff for BO12514.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8383-PA 53..912 15..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:43:06 Download gff for BO12514.3prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 163..1029 6..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:14 Download gff for BO12514.3prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 163..1029 6..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:14 Download gff for BO12514.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9741061..9741142 794..875 100 -> Minus
3R 9741199..9741983 6..793 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:43:06 Download gff for BO12514.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5566783..5566864 794..875 100 -> Minus
arm_3R 5566921..5567705 6..793 99   Minus

BO12514.5prime Sequence

843 bp (779 high quality bases) assembled on 2006-05-08

> BO12514.5prime
GAAGTTATCAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACG
ACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAAT
GAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAG
ATCGGAAAAATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATG
GGGACCGACCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGAC
AAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGA
AGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGA
TGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCG
AGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAA
GTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTG
AGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTG
AGGAAACAGCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGA
GATCCGTAGATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCT
GGGAAGCAACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAA
CCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATT
GTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCGCG
AAGAATTGGAAGTTGAGCTTAAAAACTTGGAGAACATGAACTT

BO12514.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8383-PA 912 Pnn-RA 1..827 17..843 4135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-RB 1659 CG8383-RB 111..937 17..843 4135 100 Plus
Pnn-RA 1202 CG8383-RA 111..937 17..843 4135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9741197..9741891 149..843 3475 100 Plus
3R 32079331 3R 9741009..9741142 17..150 670 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:27:56 has no hits.

BO12514.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:55 Download gff for BO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:28 Download gff for BO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8383-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:39 Download gff for BO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 111..937 17..843 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:22:14 Download gff for BO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 111..937 17..843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:22:14 Download gff for BO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9741009..9741142 17..150 100 -> Plus
3R 9741199..9741891 151..843 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:39 Download gff for BO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5566731..5566864 17..150 100 -> Plus
arm_3R 5566921..5567613 151..843 100   Plus

BO12514.complete Sequence

943 bp assembled on 2006-10-11

GenBank Submission: FJ632463

> BO12514.complete
GAAGTTATCAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACG
ACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAAT
GAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAG
ATCGGAAAAATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATG
GGGACCGACCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGAC
AAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGA
AGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGA
TGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCG
AGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAA
GTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTG
AGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTG
AGGAAACAGCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGA
GATCCGTAGATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCT
GGGAAGCAACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAA
CCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATT
GTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCGCG
AAGAATTGGAAGTTGAGCTTAAAAACTTGGAGAACATGAACTTTGGGAAG
ATGGAAGACGATACTGCAATAGACGAAAGTTTCTATGAAGAGCCTGACGA
CGAAGAGCAGTTGGATAAGTGTAAGGCAAGCTTTCTAGACCAT

BO12514.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-RA 912 CG8383-PA 1..909 17..925 4545 100 Plus
Pnn-RB 924 CG8383-PB 1..904 17..920 4520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-RA 1202 CG8383-RA 111..1019 17..925 4545 100 Plus
Pnn-RB 1659 CG8383-RB 111..1014 17..920 4520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9741197..9741973 149..925 3885 100 Plus
3R 32079331 3R 9741009..9741142 17..150 670 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:43:36 has no hits.

BO12514.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:48 Download gff for BO12514.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 1..912 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:57 Download gff for BO12514.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 88..1006 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:21 Download gff for BO12514.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 111..1019 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:48 Download gff for BO12514.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 88..1006 17..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:54 Download gff for BO12514.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 111..1019 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:54 Download gff for BO12514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9741009..9741142 17..150 100 -> Plus
3R 9741199..9741973 151..927 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:21 Download gff for BO12514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5566731..5566864 17..150 100 -> Plus
arm_3R 5566921..5567695 151..927 99   Plus

BO12514.pep Sequence

Translation from 16 to 943

> BO12514.pep
MVNDSGLSTVDDLEQKLNSAKQSLVILNENIRRIAGRVPKESLQRSEKFK
YTQDGKKNEHNGDRPFPRNATPGGVFKDKRRMYESKNPISRFPIEENEGR
PPRINSRVIREMPTKKEIVEAQGTDSESRARNRRMFGSLLGTLQKFCQEE
SRLKSKEDKKAEIDRKVEKQELQERAMLRKQRETLFLDRKKKQFEIRRLE
YKMARMKDFKVWEATMLNAKNNIRTKTKPHLFFRPKVHSPRTEKLLSKSK
SEADVFIEFRREELEVELKNLENMNFGKMEDDTAIDESFYEEPDDEEQLD
KCKASFLDH

BO12514.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-PA 303 CG8383-PA 1..303 1..303 1554 100 Plus
Pnn-PB 307 CG8383-PB 1..301 1..301 1540 100 Plus