Clone Sequence Records
BO12514.3prime Sequence
875 bp (841 high quality bases) assembled on 2006-05-08
> BO12514.3prime
ATGGTCTAGAAAGCTTGCCTTACACTTATCCAACTGCTCTTCGTCGTCAG
GCTCTTCATAGAAACTTTCGTCTATTGCAGTATCGTCTTCCATCTTCCCA
AAGTTCATGTTCTCCAAGTTTTTAAGCTCAACTTCCAATTCTTCGCGCCG
GAATTCTATAAACACATCAGCTTCACTTTTGCTTTTGCTCAACAATTTTT
CCGTTCTAGGCGAATGCACTTTTGGCCTAAAGAACAGATGTGGTTTCGTT
TTTGTTCGGATGTTATTTTTCGCATTCAACATAGTTGCTTCCCAGACCTT
GAAGTCCTTCATTCTGGCCATTTTGTACTCTAATCTACGGATCTCGAATT
GCTTTTTTTTCCTATCTAAGAATAGTGTTTCACGCTGTTTCCTCAGCATC
GCTCTTTCCTGCAGTTCCTGCTTTTCCACCTTCCTATCGATCTCAGCCTT
TTTATCCTCCTTGCTCTTCAGTCGCGATTCCTCCTGACAGAACTTCTGTA
GGGTTCCCAACAGCGATCCGAACATCCTGCGATTCCTGGCCCTCGACTCA
GAGTCTGTGCCCTGTGCCTCGACAATCTCCTTTTTAGTTGGCATCTCCCG
GATGACCCGCGAGTTAATCCGTGGCGGACGACCCTCGTTTTCTTCGATTG
GGAAACGGGAAATTGGATTCTTGCTTTCGTACATTCGCCGCTTGTCTTTG
AAGACCCCACCGGGTGTTGCATTTCGGGGGAACGGTCGGTCCCCATTGTG
CTCGTTCTTCTTGCCATCTTGGGTGTATTTGAATTTTTCCGATCTCTGCA
GGGATTCCTTGGGGACGCGACCAGCAATGCGGCGAATGTTTTCATTTAGG
ATCACCAGCGACTGCTTGGCCGAAT
BO12514.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8383-PA | 912 | Pnn-RA | 53..909 | 875..19 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-RA | 1202 | CG8383-RA | 163..1019 | 875..19 | 4285 | 100 | Minus |
Pnn-RB | 1659 | CG8383-RB | 163..1014 | 875..24 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9741197..9741973 | 795..19 | 3885 | 100 | Minus |
3R | 32079331 | 3R | 9741061..9741142 | 875..794 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:46:51 has no hits.
BO12514.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:54 Download gff for
BO12514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-PA | 53..912 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:27 Download gff for
BO12514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8383-PA | 53..912 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:43:06 Download gff for
BO12514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 163..1029 | 6..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:14 Download gff for
BO12514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 163..1029 | 6..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:14 Download gff for
BO12514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9741061..9741142 | 794..875 | 100 | -> | Minus |
3R | 9741199..9741983 | 6..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:43:06 Download gff for
BO12514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5566783..5566864 | 794..875 | 100 | -> | Minus |
arm_3R | 5566921..5567705 | 6..793 | 99 | | Minus |
BO12514.5prime Sequence
843 bp (779 high quality bases) assembled on 2006-05-08
> BO12514.5prime
GAAGTTATCAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACG
ACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAAT
GAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAG
ATCGGAAAAATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATG
GGGACCGACCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGAC
AAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGA
AGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGA
TGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCG
AGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAA
GTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTG
AGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTG
AGGAAACAGCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGA
GATCCGTAGATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCT
GGGAAGCAACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAA
CCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATT
GTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCGCG
AAGAATTGGAAGTTGAGCTTAAAAACTTGGAGAACATGAACTT
BO12514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8383-PA | 912 | Pnn-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-RB | 1659 | CG8383-RB | 111..937 | 17..843 | 4135 | 100 | Plus |
Pnn-RA | 1202 | CG8383-RA | 111..937 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9741197..9741891 | 149..843 | 3475 | 100 | Plus |
3R | 32079331 | 3R | 9741009..9741142 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:27:56 has no hits.
BO12514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:55 Download gff for
BO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:28 Download gff for
BO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8383-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:39 Download gff for
BO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 111..937 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:22:14 Download gff for
BO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 111..937 | 17..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:22:14 Download gff for
BO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9741009..9741142 | 17..150 | 100 | -> | Plus |
3R | 9741199..9741891 | 151..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:39 Download gff for
BO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5566731..5566864 | 17..150 | 100 | -> | Plus |
arm_3R | 5566921..5567613 | 151..843 | 100 | | Plus |
BO12514.complete Sequence
943 bp assembled on 2006-10-11
GenBank Submission: FJ632463
> BO12514.complete
GAAGTTATCAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACG
ACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAAT
GAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAG
ATCGGAAAAATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATG
GGGACCGACCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGAC
AAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGA
AGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGA
TGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCG
AGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAA
GTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTG
AGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTG
AGGAAACAGCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGA
GATCCGTAGATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCT
GGGAAGCAACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAA
CCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATT
GTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCGCG
AAGAATTGGAAGTTGAGCTTAAAAACTTGGAGAACATGAACTTTGGGAAG
ATGGAAGACGATACTGCAATAGACGAAAGTTTCTATGAAGAGCCTGACGA
CGAAGAGCAGTTGGATAAGTGTAAGGCAAGCTTTCTAGACCAT
BO12514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-RA | 912 | CG8383-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Pnn-RB | 924 | CG8383-PB | 1..904 | 17..920 | 4520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-RA | 1202 | CG8383-RA | 111..1019 | 17..925 | 4545 | 100 | Plus |
Pnn-RB | 1659 | CG8383-RB | 111..1014 | 17..920 | 4520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9741197..9741973 | 149..925 | 3885 | 100 | Plus |
3R | 32079331 | 3R | 9741009..9741142 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:43:36 has no hits.
BO12514.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:48 Download gff for
BO12514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 1..912 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:57 Download gff for
BO12514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 88..1006 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:21 Download gff for
BO12514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 111..1019 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:48 Download gff for
BO12514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 88..1006 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:54 Download gff for
BO12514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 111..1019 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:54 Download gff for
BO12514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9741009..9741142 | 17..150 | 100 | -> | Plus |
3R | 9741199..9741973 | 151..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:21 Download gff for
BO12514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5566731..5566864 | 17..150 | 100 | -> | Plus |
arm_3R | 5566921..5567695 | 151..927 | 99 | | Plus |
BO12514.pep Sequence
Translation from 16 to 943
> BO12514.pep
MVNDSGLSTVDDLEQKLNSAKQSLVILNENIRRIAGRVPKESLQRSEKFK
YTQDGKKNEHNGDRPFPRNATPGGVFKDKRRMYESKNPISRFPIEENEGR
PPRINSRVIREMPTKKEIVEAQGTDSESRARNRRMFGSLLGTLQKFCQEE
SRLKSKEDKKAEIDRKVEKQELQERAMLRKQRETLFLDRKKKQFEIRRLE
YKMARMKDFKVWEATMLNAKNNIRTKTKPHLFFRPKVHSPRTEKLLSKSK
SEADVFIEFRREELEVELKNLENMNFGKMEDDTAIDESFYEEPDDEEQLD
KCKASFLDH
BO12514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-PA | 303 | CG8383-PA | 1..303 | 1..303 | 1554 | 100 | Plus |
Pnn-PB | 307 | CG8383-PB | 1..301 | 1..301 | 1540 | 100 | Plus |