Clone Sequence Records
BO12516.3prime Sequence
479 bp (478 high quality bases) assembled on 2006-05-08
> BO12516.3prime
ATGGTCTAGAAAGCTTGCAAAATCCAGTTTTTCCTTGTCGAACTGAATGT
ACTTGACCTGTCCGCCCTTGGCGATGATCTTTCCATCGGACTTACGCCTC
AGAATGCAGTCCAAATAGGCCATTTTCTTACCGGCCCGCACGGTATTACA
ATCAATTTCAATAAGTTCGCCAGGTTTCGCTGCTGCAATGTAGCTTACAT
TCAGGTTGGCCGTAACTCCGGGATGGGATCCTTTCGACATAAGGGCATAT
GTGGTACAATTATCAACAATTGTTGCCGTAAGACCACCGTGCAAAGTTCC
TTGGCGATTCAAATGCTCATTGGCCACAGTGAACTCCCCTATTGCGCGAC
CATCTCCACCGCCTGTAATTTTAATCATTTTCAAGACGCGGTCGAATCCA
TTGGACCCGCTGGCGTACTCGGACATCTGCTTCACAAAGTCCATTCCCAG
TTTCTTGGCCGCCATGTCGACTGATAACT
BO12516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-PA | 450 | CG16985-RA | 1..447 | 465..19 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-RA | 641 | CG16985-RA | 61..507 | 465..19 | 2235 | 100 | Minus |
CG12182-RC | 3493 | CG12182-RC | 79..145 | 376..442 | 335 | 100 | Plus |
CG12182-RB | 2508 | CG12182-RB | 79..145 | 376..442 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2599894..2600108 | 233..19 | 1075 | 100 | Minus |
3L | 28110227 | 3L | 2599687..2599833 | 376..230 | 735 | 100 | Minus |
3L | 28110227 | 3L | 2599435..2599501 | 442..376 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:50:02 has no hits.
BO12516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:58 Download gff for
BO12516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:32 Download gff for
BO12516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:43:45 Download gff for
BO12516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 59..510 | 15..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:55 Download gff for
BO12516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 59..510 | 15..468 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:55 Download gff for
BO12516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2599355..2599380 | 442..468 | 96 | -> | Minus |
3L | 2599436..2599501 | 376..441 | 100 | -> | Minus |
3L | 2599688..2599832 | 231..375 | 100 | -> | Minus |
3L | 2599897..2600111 | 15..230 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:43:45 Download gff for
BO12516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2599355..2599380 | 442..468 | 96 | -> | Minus |
arm_3L | 2599436..2599501 | 376..441 | 100 | -> | Minus |
arm_3L | 2599688..2599832 | 231..375 | 100 | -> | Minus |
arm_3L | 2599897..2600111 | 15..230 | 99 | | Minus |
BO12516.5prime Sequence
479 bp (478 high quality bases) assembled on 2006-05-08
> BO12516.5prime
GAAGTTATCAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGA
AGCAGATGTCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTG
AAAATGATTAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTT
CACTGTGGCCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTC
TTACGGCAACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAA
GGATCCCATCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGC
AGCGAAACCTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCG
GTAAGAAAATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGA
AAGATCATCGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGA
AAAACTGGATTTTGCAAGCTTTCTAGACC
BO12516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-PA | 450 | CG16985-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-RA | 641 | CG16985-RA | 61..507 | 17..463 | 2235 | 100 | Plus |
CG12182-RC | 3493 | CG12182-RC | 79..145 | 106..40 | 335 | 100 | Minus |
CG12182-RB | 2508 | CG12182-RB | 79..145 | 106..40 | 335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2599894..2600108 | 249..463 | 1075 | 100 | Plus |
3L | 28110227 | 3L | 2599687..2599833 | 106..252 | 735 | 100 | Plus |
3L | 28110227 | 3L | 2599435..2599501 | 40..106 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:22:34 has no hits.
BO12516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:59 Download gff for
BO12516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:34 Download gff for
BO12516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:26 Download gff for
BO12516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 59..510 | 14..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:37 Download gff for
BO12516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 59..510 | 14..467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:37 Download gff for
BO12516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2599355..2599380 | 14..40 | 96 | -> | Plus |
3L | 2599436..2599501 | 41..106 | 100 | -> | Plus |
3L | 2599688..2599832 | 107..251 | 100 | -> | Plus |
3L | 2599897..2600111 | 252..467 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:26 Download gff for
BO12516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2599355..2599380 | 14..40 | 96 | -> | Plus |
arm_3L | 2599436..2599501 | 41..106 | 100 | -> | Plus |
arm_3L | 2599688..2599832 | 107..251 | 100 | -> | Plus |
arm_3L | 2599897..2600111 | 252..467 | 99 | | Plus |
BO12516.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ632465
> BO12516.complete
GAAGTTATCAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGA
AGCAGATGTCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTG
AAAATGATTAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTT
CACTGTGGCCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTC
TTACGGCAACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAA
GGATCCCATCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGC
AGCGAAACCTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCG
GTAAGAAAATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGA
AAGATCATCGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGA
AAAACTGGATTTTGCAAGCTTTCTAGACCAT
BO12516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-RA | 450 | CG16985-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-RA | 641 | CG16985-RA | 61..507 | 17..463 | 2235 | 100 | Plus |
CG12182-RC | 3493 | CG12182-RC | 79..145 | 106..40 | 335 | 100 | Minus |
CG12182-RB | 2508 | CG12182-RB | 79..145 | 106..40 | 335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2599894..2600108 | 249..463 | 1075 | 100 | Plus |
3L | 28110227 | 3L | 2599687..2599833 | 106..252 | 735 | 100 | Plus |
3L | 28110227 | 3L | 2599435..2599501 | 40..106 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:45:49 has no hits.
BO12516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:49 Download gff for
BO12516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:58 Download gff for
BO12516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 54..505 | 14..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:36 Download gff for
BO12516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 61..507 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:49 Download gff for
BO12516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 54..505 | 14..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:58 Download gff for
BO12516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16985-RA | 61..507 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:58 Download gff for
BO12516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2599688..2599832 | 107..251 | 100 | -> | Plus |
3L | 2599897..2600108 | 252..465 | 99 | | Plus |
3L | 2599357..2599380 | 17..40 | 100 | -> | Plus |
3L | 2599436..2599501 | 41..106 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:36 Download gff for
BO12516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2599688..2599832 | 107..251 | 100 | -> | Plus |
arm_3L | 2599897..2600108 | 252..465 | 99 | | Plus |
arm_3L | 2599357..2599380 | 17..40 | 100 | -> | Plus |
arm_3L | 2599436..2599501 | 41..106 | 100 | -> | Plus |
BO12516.pep Sequence
Translation from 16 to 481
> BO12516.pep
MAAKKLGMDFVKQMSEYASGSNGFDRVLKMIKITGGGDGRAIGEFTVANE
HLNRQGTLHGGLTATIVDNCTTYALMSKGSHPGVTANLNVSYIAAAKPGE
LIEIDCNTVRAGKKMAYLDCILRRKSDGKIIAKGGQVKYIQFDKEKLDFA
SFLDH
BO12516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16985-PA | 149 | CG16985-PA | 1..149 | 1..149 | 768 | 100 | Plus |
CG16986-PB | 143 | CG16986-PB | 1..143 | 1..143 | 330 | 44.1 | Plus |
CG16986-PA | 143 | CG16986-PA | 1..143 | 1..143 | 330 | 44.1 | Plus |