Clone BO12516 Report

Search the DGRC for BO12516

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG16985-RA
Protein status:BO12516.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO12516.3prime Sequence

479 bp (478 high quality bases) assembled on 2006-05-08

> BO12516.3prime
ATGGTCTAGAAAGCTTGCAAAATCCAGTTTTTCCTTGTCGAACTGAATGT
ACTTGACCTGTCCGCCCTTGGCGATGATCTTTCCATCGGACTTACGCCTC
AGAATGCAGTCCAAATAGGCCATTTTCTTACCGGCCCGCACGGTATTACA
ATCAATTTCAATAAGTTCGCCAGGTTTCGCTGCTGCAATGTAGCTTACAT
TCAGGTTGGCCGTAACTCCGGGATGGGATCCTTTCGACATAAGGGCATAT
GTGGTACAATTATCAACAATTGTTGCCGTAAGACCACCGTGCAAAGTTCC
TTGGCGATTCAAATGCTCATTGGCCACAGTGAACTCCCCTATTGCGCGAC
CATCTCCACCGCCTGTAATTTTAATCATTTTCAAGACGCGGTCGAATCCA
TTGGACCCGCTGGCGTACTCGGACATCTGCTTCACAAAGTCCATTCCCAG
TTTCTTGGCCGCCATGTCGACTGATAACT

BO12516.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-PA 450 CG16985-RA 1..447 465..19 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-RA 641 CG16985-RA 61..507 465..19 2235 100 Minus
CG12182-RC 3493 CG12182-RC 79..145 376..442 335 100 Plus
CG12182-RB 2508 CG12182-RB 79..145 376..442 335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2599894..2600108 233..19 1075 100 Minus
3L 28110227 3L 2599687..2599833 376..230 735 100 Minus
3L 28110227 3L 2599435..2599501 442..376 335 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:50:02 has no hits.

BO12516.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:58 Download gff for BO12516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:32 Download gff for BO12516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:43:45 Download gff for BO12516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 59..510 15..468 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:55 Download gff for BO12516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 59..510 15..468 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:55 Download gff for BO12516.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2599355..2599380 442..468 96 -> Minus
3L 2599436..2599501 376..441 100 -> Minus
3L 2599688..2599832 231..375 100 -> Minus
3L 2599897..2600111 15..230 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:43:45 Download gff for BO12516.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2599355..2599380 442..468 96 -> Minus
arm_3L 2599436..2599501 376..441 100 -> Minus
arm_3L 2599688..2599832 231..375 100 -> Minus
arm_3L 2599897..2600111 15..230 99   Minus

BO12516.5prime Sequence

479 bp (478 high quality bases) assembled on 2006-05-08

> BO12516.5prime
GAAGTTATCAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGA
AGCAGATGTCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTG
AAAATGATTAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTT
CACTGTGGCCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTC
TTACGGCAACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAA
GGATCCCATCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGC
AGCGAAACCTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCG
GTAAGAAAATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGA
AAGATCATCGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGA
AAAACTGGATTTTGCAAGCTTTCTAGACC

BO12516.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-PA 450 CG16985-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-RA 641 CG16985-RA 61..507 17..463 2235 100 Plus
CG12182-RC 3493 CG12182-RC 79..145 106..40 335 100 Minus
CG12182-RB 2508 CG12182-RB 79..145 106..40 335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2599894..2600108 249..463 1075 100 Plus
3L 28110227 3L 2599687..2599833 106..252 735 100 Plus
3L 28110227 3L 2599435..2599501 40..106 335 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:22:34 has no hits.

BO12516.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:37:59 Download gff for BO12516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:34 Download gff for BO12516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:26 Download gff for BO12516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 59..510 14..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:37 Download gff for BO12516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 59..510 14..467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:37 Download gff for BO12516.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2599355..2599380 14..40 96 -> Plus
3L 2599436..2599501 41..106 100 -> Plus
3L 2599688..2599832 107..251 100 -> Plus
3L 2599897..2600111 252..467 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:26 Download gff for BO12516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2599355..2599380 14..40 96 -> Plus
arm_3L 2599436..2599501 41..106 100 -> Plus
arm_3L 2599688..2599832 107..251 100 -> Plus
arm_3L 2599897..2600111 252..467 99   Plus

BO12516.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ632465

> BO12516.complete
GAAGTTATCAGTCGACATGGCGGCCAAGAAACTGGGAATGGACTTTGTGA
AGCAGATGTCCGAGTACGCCAGCGGGTCCAATGGATTCGACCGCGTCTTG
AAAATGATTAAAATTACAGGCGGTGGAGATGGTCGCGCAATAGGGGAGTT
CACTGTGGCCAATGAGCATTTGAATCGCCAAGGAACTTTGCACGGTGGTC
TTACGGCAACAATTGTTGATAATTGTACCACATATGCCCTTATGTCGAAA
GGATCCCATCCCGGAGTTACGGCCAACCTGAATGTAAGCTACATTGCAGC
AGCGAAACCTGGCGAACTTATTGAAATTGATTGTAATACCGTGCGGGCCG
GTAAGAAAATGGCCTATTTGGACTGCATTCTGAGGCGTAAGTCCGATGGA
AAGATCATCGCCAAGGGCGGACAGGTCAAGTACATTCAGTTCGACAAGGA
AAAACTGGATTTTGCAAGCTTTCTAGACCAT

BO12516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-RA 450 CG16985-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-RA 641 CG16985-RA 61..507 17..463 2235 100 Plus
CG12182-RC 3493 CG12182-RC 79..145 106..40 335 100 Minus
CG12182-RB 2508 CG12182-RB 79..145 106..40 335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2599894..2600108 249..463 1075 100 Plus
3L 28110227 3L 2599687..2599833 106..252 735 100 Plus
3L 28110227 3L 2599435..2599501 40..106 335 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:45:49 has no hits.

BO12516.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:49 Download gff for BO12516.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:58 Download gff for BO12516.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 54..505 14..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:36 Download gff for BO12516.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 61..507 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:49 Download gff for BO12516.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 54..505 14..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:58 Download gff for BO12516.complete
Subject Subject Range Query Range Percent Splice Strand
CG16985-RA 61..507 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:58 Download gff for BO12516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2599688..2599832 107..251 100 -> Plus
3L 2599897..2600108 252..465 99   Plus
3L 2599357..2599380 17..40 100 -> Plus
3L 2599436..2599501 41..106 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:36 Download gff for BO12516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2599688..2599832 107..251 100 -> Plus
arm_3L 2599897..2600108 252..465 99   Plus
arm_3L 2599357..2599380 17..40 100 -> Plus
arm_3L 2599436..2599501 41..106 100 -> Plus

BO12516.pep Sequence

Translation from 16 to 481

> BO12516.pep
MAAKKLGMDFVKQMSEYASGSNGFDRVLKMIKITGGGDGRAIGEFTVANE
HLNRQGTLHGGLTATIVDNCTTYALMSKGSHPGVTANLNVSYIAAAKPGE
LIEIDCNTVRAGKKMAYLDCILRRKSDGKIIAKGGQVKYIQFDKEKLDFA
SFLDH

BO12516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16985-PA 149 CG16985-PA 1..149 1..149 768 100 Plus
CG16986-PB 143 CG16986-PB 1..143 1..143 330 44.1 Plus
CG16986-PA 143 CG16986-PA 1..143 1..143 330 44.1 Plus