Clone BO12517 Report

Search the DGRC for BO12517

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG16863-RA
Protein status:BO12517.pep: validated full length
Sequenced Size:1699

Clone Sequence Records

BO12517.3prime Sequence

937 bp (797 high quality bases) assembled on 2006-05-08

> BO12517.3prime
ATGGTCTAGAAAGCTTGCTAACTGCCACTCCTTCGTTGGAATTTCCGCCA
TGAAGAGTATGTTTTCCATGTTGTTTTCGATTAGTCTGGCGTACTGCGCC
GCAACCGCCGCTCCTTCGGCCGTAAATAGCCGATCCGCCGGCTCTGCGGT
GGCCGGAACGTGCAGGTACCTCTGTGCTACGTTGTGCAGGAAGGGGTGAG
CTTCGGCCAGTTCCTCCCAGAGCTGAAAGGGATCGGCTCGCAGGGTACTC
ATGCCGGCGCAAAAGTATCTGGCTATCTCATCGTCCGCCTCGGGACCGTT
GCTGCCGTTTACAATCCTTTGCTTCCCATGCGAAAAGGATTTGAATGCCG
CCCAGATATCGTAGTGATCACGGTTCTCCGGATGCTTTGCAACAGCTTGC
TCCCCGCTGTCCACATGCGCCTGCATCATGTCATAGAGTTGAGTCATGTA
CTGGGCCACCAGGGCCCCACTCCGGAAGGGAATATTTCGAAAGCGTGGGT
CCAGCAGACTTGCCAATGCCAGGTGCAAGTTGCGCTCCATTCGTTCGAAG
ATCTCCTCCAGCTGCTGAACCAGGAACAAGCGTATTTCCCTGGCAACCAT
GTGTTCCGCACTCTTCTCCTGCTTCAGTTCGTTGATCAGAGTTTGGGCAA
TGGGCAGGGCTGTGCTGGCCGCCGGATATGGTGTTCGACTTAGCTCACGC
ATGGAGCTGGTCAACGGCCTCAGCACGTCCAGCAATTGCTGACACAAATC
CACCTCCGATGTCGAAAGCGGCAGCGGCTCTTGAACGAGAGTCTGTTTCA
GGTATAAGTCTAGCATATTGTACACACTAATCGGTCGGTGTATGGAATCC
AGTTGGGGATTCAGCTGCAATGTGGACTGCACATGGGAACGCACCTTGTC
GCGCAAATGACGTATTTCTGGGCGCTGCACCACCTCC

BO12517.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-PB 1986 CG16863-RB 1065..1983 937..19 4595 100 Minus
CG16863-PA 1668 CG16863-RA 747..1665 937..19 4595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-RA 2237 CG16863-RA 1187..2105 937..19 4595 100 Minus
CG16863-RB 2184 CG16863-RB 1134..2052 937..19 4595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13792214..13793132 937..19 4595 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:32:11 has no hits.

BO12517.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:00 Download gff for BO12517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16863-PA 747..1668 18..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:35 Download gff for BO12517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16863-PA 747..1668 18..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:19:20 Download gff for BO12517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 1134..2056 13..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:13 Download gff for BO12517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 1134..2056 13..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:13 Download gff for BO12517.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13792214..13793136 14..937 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:19:20 Download gff for BO12517.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13792214..13793136 14..937 99 -> Minus

BO12517.5prime Sequence

942 bp (871 high quality bases) assembled on 2006-05-08

> BO12517.5prime
GAAGTTATCAGTCGACATGATCAAGGCGGCTGCTGAGGATCGCATCTCAA
CAAAGAGCGTCGGGTATGCGTGGGTCTCTCCGGAGGCCACAGTGTCCCGA
ACGGAGACGGTTGGCGGCGACGATATCATCGAGTTCGAACCCAAGGAGGA
GCTCGATGAGTCGGAGAAAAGCCCACTTCCCCAAATTCATGCTGTACCAT
TTGCCGGCCATGACAACTTAAAAATGGAAGAACCTCTGCCGAGCGAGAGT
CCGTTTCACAAGGACATTGCCTTCTTTGTCTGCCGTGACCGCCAGTCATT
GCAGATTGTGCAGGGCGAGGGATTCCAGCACCTAGTGAAAGTACTGTGCC
CCACCTACAGACCACCGAGTGCGGCGAAACTGGAGGCCATTATCTGCAGG
GAGTCGGAAGCGCAGAGGTCCAAGCTCTGCCAGCAGTTGGCCGACATCTC
GACACTCAGCCTAAGTTGCTCGGTGCACACGAATGCGGAGAGTCGAAGCT
GGATGGAGCTGGTGGCCCACTTTCACGAGGGGCGGCAACGAATCTCCCGA
ACTCTTTCTGTGCTGCGCCTTCCCGATCTTTTCACCTCCAACGATCTGGT
GGATCGCATGGACCAAGTGTGTCAGCGCTTCGACATTCCAAAGTCAAGGA
TCTGCTGCGTGTCGACAAGGAGCAGTCAACTACTGGAGGATGCGGTGACA
TCGTTCATGGGCGCTCATCATCATGTTCCCTGCTTCGCAGACCAATTGAA
TTCTATTTTAGAGGAGGTGGTGCAGCGCCCAGAAATACGTCATTTGCGCG
ACAAGGTGCGTTCCCATGTGCAGTCCACATTGCAGCTGAATCCCCAACTG
GATTCCATACACCGACCGATTAGTGTGTACAATATGCTAGACTTATACCC
TGAACAGACTCTCGTTTCAGAAGCGCTGCCGCTTTCGACATC

BO12517.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-PB 1986 CG16863-RB 319..1201 17..899 4390 99.8 Plus
CG16863-PA 1668 CG16863-RA 1..883 17..899 4390 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-RA 2237 CG16863-RA 441..1366 17..942 4510 99.2 Plus
CG16863-RB 2184 CG16863-RB 388..1313 17..942 4510 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13791665..13792393 214..942 3540 99 Plus
2L 23513712 2L 13791399..13791595 17..213 970 99.5 Plus
Blast to na_te.dros performed on 2015-02-13 08:36:15 has no hits.

BO12517.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:01 Download gff for BO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16863-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:36 Download gff for BO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16863-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:27 Download gff for BO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 380..1313 7..942 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:22:54 Download gff for BO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 380..1313 7..942 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:22:54 Download gff for BO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13791391..13791595 7..213 97 -> Plus
2L 13791665..13792393 214..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:27 Download gff for BO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13791391..13791595 7..213 97 -> Plus
arm_2L 13791665..13792393 214..942 99   Plus

BO12517.complete Sequence

1699 bp assembled on 2007-06-22

GenBank Submission: FJ632466

> BO12517.complete
GAAGTTATCAGTCGACATGATCAAGGCGGCTGCTGAGGATCGCATCTCAA
CAAAGAGCGTCGGGTATGCGTGGGTCTCTCCGGAGGCCACAGTGTCCCGA
ACGGAGACGGTTGGCGGCGACGATATCATCGAGTTCGAACCCAAGGAGGA
GCTCGATGAGTCGGAGAAAAGCCCACTTCCCCAAATTCATGCTGTACCAT
TTGCCGGCCATGACAACTTAAAAATGGAAGAACCTCTGCCGAGCGAGAGT
CCGTTTCACAAGGACATTGCCTTCTTTGTCTGCCGTGACCGCCAGTCATT
GCAGATTGTGCAGGGCGAGGGATTCCAGCACCTAGTGAAAGTACTGTGCC
CCACCTACAGACCACCGAGTGCGGCGAAACTGGAGGCCATTATCTGCAGG
GAGTCGGAAGCGCAGAGGTCCAAGCTCTGCCAGCAGTTGGCCGACATCTC
GACACTCAGCCTAAGTTGCTCGGTGCACACGAATGCGGAGAGTCGAAGCT
GGATGGAGCTGGTGGCCCACTTTCACGAGGGGCGGCAACGAATCTCCCGA
ACTCTTTCTGTGCTGCGCCTTCCCGATCTTTTCACCTCCAACGATCTGGT
GGATCGCATGGACCAAGTGTGTCAGCGCTTCGACATTCCAAAGTCAAGGA
TCTGCTGCGTGTCGACAAGGAGCAGTCAACTACTGGAGGATGCGGTGACA
TCGTTCATGGGCGCTCATCATCATGTTCCCTGCTTCGCAGACCAATTGAA
TTCTATTTTAGAGGAGGTGGTGCAGCGCCCAGAAATACGTCATTTGCGCG
ACAAGGTGCGTTCCCATGTGCAGTCCACATTGCAGCTGAATCCCCAACTG
GATTCCATACACCGACCGATTAGTGTGTACAATATGCTAGACTTATACCT
GAAACAGACTCTCGTTCAAGAGCCGCTGCCGCTTTCGACATCGGAGGTGG
ATTTGTGTCAGCAATTGCTGGACGTGCTGAGGCCGTTGACCAGCTCCATG
CGTGAGCTAAGTCGAACACCATATCCGGCGGCCAGCACAGCCCTGCCCAT
TGCCCAAACTCTGATCAACGAACTGAAGCAGGAGAAGAGTGCGGAACACA
TGGTTGCCAGGGAAATACGCTTGTTCCTGGTTCAGCAGCTGGAGGAGATC
TTCGAACGAATGGAGCGCAACTTGCACCTGGCATTGGCAAGTCTGCTGGA
CCCACGCTTTCGAAATATTCCCTTCCGGAGTGGGGCCCTGGTGGCCCAGT
ACATGACTCAACTCTATGACATGATGCAGGCGCATGTGGACAGCGGGGAG
CAAGCTGTTGCAAAGCATCCGGAGAACCGTGATCACTACGATATCTGGGC
GGCATTCAAATCCTTTTCGCATGGGAAGCAAAGGATTGTAAACGGCAGCA
ACGGTCCCGAGGCGGACGATGAGATAGCCAGATACTTTTGCGCCGGCATG
AGTACCCTGCGAGCCGATCCCTTTCAGCTCTGGGAGGAACTGGCCGAAGC
TCACCCCTTCCTGCACAACGTAGCACAGAGGTACCTGCACGTTCCGGCCA
CCGCAGAGCCGGCGGATCGGCTATTTACGGCCGAAGGAGCGGCGGTTGCG
GCGCAGTACGCCAGACTAATCGAAAACAACATGGAAAACATACTCTTCAT
GGCGGAAATTCCAACGAAGGAGTGGCAGTTAGCAAGCTTTCTAGACCAT

BO12517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-RA 1668 CG16863-PA 1..1665 17..1681 8310 99.9 Plus
CG16863-RB 1986 CG16863-PB 319..1983 17..1681 8310 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-RA 2237 CG16863-RA 441..2105 17..1681 8310 99.9 Plus
CG16863-RB 2184 CG16863-RB 388..2052 17..1681 8310 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13791665..13793132 214..1681 7340 100 Plus
2L 23513712 2L 13791399..13791595 17..213 970 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 06:47:33 has no hits.

BO12517.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:18 Download gff for BO12517.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RA 1..1668 17..1682 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:55 Download gff for BO12517.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RA 429..2105 7..1687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:23 Download gff for BO12517.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 388..2052 17..1683 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:18 Download gff for BO12517.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RA 429..2105 7..1687 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:29 Download gff for BO12517.complete
Subject Subject Range Query Range Percent Splice Strand
CG16863-RB 388..2052 17..1683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:29 Download gff for BO12517.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13791399..13791595 17..213 99 -> Plus
2L 13791665..13793132 214..1683 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:23 Download gff for BO12517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13791399..13791595 17..213 99 -> Plus
arm_2L 13791665..13793132 214..1683 99   Plus

BO12517.pep Sequence

Translation from 16 to 1699

> BO12517.pep
MIKAAAEDRISTKSVGYAWVSPEATVSRTETVGGDDIIEFEPKEELDESE
KSPLPQIHAVPFAGHDNLKMEEPLPSESPFHKDIAFFVCRDRQSLQIVQG
EGFQHLVKVLCPTYRPPSAAKLEAIICRESEAQRSKLCQQLADISTLSLS
CSVHTNAESRSWMELVAHFHEGRQRISRTLSVLRLPDLFTSNDLVDRMDQ
VCQRFDIPKSRICCVSTRSSQLLEDAVTSFMGAHHHVPCFADQLNSILEE
VVQRPEIRHLRDKVRSHVQSTLQLNPQLDSIHRPISVYNMLDLYLKQTLV
QEPLPLSTSEVDLCQQLLDVLRPLTSSMRELSRTPYPAASTALPIAQTLI
NELKQEKSAEHMVAREIRLFLVQQLEEIFERMERNLHLALASLLDPRFRN
IPFRSGALVAQYMTQLYDMMQAHVDSGEQAVAKHPENRDHYDIWAAFKSF
SHGKQRIVNGSNGPEADDEIARYFCAGMSTLRADPFQLWEELAEAHPFLH
NVAQRYLHVPATAEPADRLFTAEGAAVAAQYARLIENNMENILFMAEIPT
KEWQLASFLDH

BO12517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG16863-PA 555 CG16863-PA 1..555 1..555 2866 100 Plus
CG16863-PB 661 CG16863-PB 107..661 1..555 2866 100 Plus