Clone Sequence Records
BO12517.3prime Sequence
937 bp (797 high quality bases) assembled on 2006-05-08
> BO12517.3prime
ATGGTCTAGAAAGCTTGCTAACTGCCACTCCTTCGTTGGAATTTCCGCCA
TGAAGAGTATGTTTTCCATGTTGTTTTCGATTAGTCTGGCGTACTGCGCC
GCAACCGCCGCTCCTTCGGCCGTAAATAGCCGATCCGCCGGCTCTGCGGT
GGCCGGAACGTGCAGGTACCTCTGTGCTACGTTGTGCAGGAAGGGGTGAG
CTTCGGCCAGTTCCTCCCAGAGCTGAAAGGGATCGGCTCGCAGGGTACTC
ATGCCGGCGCAAAAGTATCTGGCTATCTCATCGTCCGCCTCGGGACCGTT
GCTGCCGTTTACAATCCTTTGCTTCCCATGCGAAAAGGATTTGAATGCCG
CCCAGATATCGTAGTGATCACGGTTCTCCGGATGCTTTGCAACAGCTTGC
TCCCCGCTGTCCACATGCGCCTGCATCATGTCATAGAGTTGAGTCATGTA
CTGGGCCACCAGGGCCCCACTCCGGAAGGGAATATTTCGAAAGCGTGGGT
CCAGCAGACTTGCCAATGCCAGGTGCAAGTTGCGCTCCATTCGTTCGAAG
ATCTCCTCCAGCTGCTGAACCAGGAACAAGCGTATTTCCCTGGCAACCAT
GTGTTCCGCACTCTTCTCCTGCTTCAGTTCGTTGATCAGAGTTTGGGCAA
TGGGCAGGGCTGTGCTGGCCGCCGGATATGGTGTTCGACTTAGCTCACGC
ATGGAGCTGGTCAACGGCCTCAGCACGTCCAGCAATTGCTGACACAAATC
CACCTCCGATGTCGAAAGCGGCAGCGGCTCTTGAACGAGAGTCTGTTTCA
GGTATAAGTCTAGCATATTGTACACACTAATCGGTCGGTGTATGGAATCC
AGTTGGGGATTCAGCTGCAATGTGGACTGCACATGGGAACGCACCTTGTC
GCGCAAATGACGTATTTCTGGGCGCTGCACCACCTCC
BO12517.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16863-PB | 1986 | CG16863-RB | 1065..1983 | 937..19 | 4595 | 100 | Minus |
CG16863-PA | 1668 | CG16863-RA | 747..1665 | 937..19 | 4595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16863-RA | 2237 | CG16863-RA | 1187..2105 | 937..19 | 4595 | 100 | Minus |
CG16863-RB | 2184 | CG16863-RB | 1134..2052 | 937..19 | 4595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13792214..13793132 | 937..19 | 4595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:32:11 has no hits.
BO12517.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:00 Download gff for
BO12517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-PA | 747..1668 | 18..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:35 Download gff for
BO12517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-PA | 747..1668 | 18..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:19:20 Download gff for
BO12517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RB | 1134..2056 | 13..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:13 Download gff for
BO12517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RB | 1134..2056 | 13..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:13 Download gff for
BO12517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13792214..13793136 | 14..937 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:19:20 Download gff for
BO12517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13792214..13793136 | 14..937 | 99 | -> | Minus |
BO12517.5prime Sequence
942 bp (871 high quality bases) assembled on 2006-05-08
> BO12517.5prime
GAAGTTATCAGTCGACATGATCAAGGCGGCTGCTGAGGATCGCATCTCAA
CAAAGAGCGTCGGGTATGCGTGGGTCTCTCCGGAGGCCACAGTGTCCCGA
ACGGAGACGGTTGGCGGCGACGATATCATCGAGTTCGAACCCAAGGAGGA
GCTCGATGAGTCGGAGAAAAGCCCACTTCCCCAAATTCATGCTGTACCAT
TTGCCGGCCATGACAACTTAAAAATGGAAGAACCTCTGCCGAGCGAGAGT
CCGTTTCACAAGGACATTGCCTTCTTTGTCTGCCGTGACCGCCAGTCATT
GCAGATTGTGCAGGGCGAGGGATTCCAGCACCTAGTGAAAGTACTGTGCC
CCACCTACAGACCACCGAGTGCGGCGAAACTGGAGGCCATTATCTGCAGG
GAGTCGGAAGCGCAGAGGTCCAAGCTCTGCCAGCAGTTGGCCGACATCTC
GACACTCAGCCTAAGTTGCTCGGTGCACACGAATGCGGAGAGTCGAAGCT
GGATGGAGCTGGTGGCCCACTTTCACGAGGGGCGGCAACGAATCTCCCGA
ACTCTTTCTGTGCTGCGCCTTCCCGATCTTTTCACCTCCAACGATCTGGT
GGATCGCATGGACCAAGTGTGTCAGCGCTTCGACATTCCAAAGTCAAGGA
TCTGCTGCGTGTCGACAAGGAGCAGTCAACTACTGGAGGATGCGGTGACA
TCGTTCATGGGCGCTCATCATCATGTTCCCTGCTTCGCAGACCAATTGAA
TTCTATTTTAGAGGAGGTGGTGCAGCGCCCAGAAATACGTCATTTGCGCG
ACAAGGTGCGTTCCCATGTGCAGTCCACATTGCAGCTGAATCCCCAACTG
GATTCCATACACCGACCGATTAGTGTGTACAATATGCTAGACTTATACCC
TGAACAGACTCTCGTTTCAGAAGCGCTGCCGCTTTCGACATC
BO12517.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16863-PB | 1986 | CG16863-RB | 319..1201 | 17..899 | 4390 | 99.8 | Plus |
CG16863-PA | 1668 | CG16863-RA | 1..883 | 17..899 | 4390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16863-RA | 2237 | CG16863-RA | 441..1366 | 17..942 | 4510 | 99.2 | Plus |
CG16863-RB | 2184 | CG16863-RB | 388..1313 | 17..942 | 4510 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13791665..13792393 | 214..942 | 3540 | 99 | Plus |
2L | 23513712 | 2L | 13791399..13791595 | 17..213 | 970 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:36:15 has no hits.
BO12517.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:01 Download gff for
BO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:36 Download gff for
BO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:27 Download gff for
BO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RB | 380..1313 | 7..942 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:22:54 Download gff for
BO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RB | 380..1313 | 7..942 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:22:54 Download gff for
BO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13791391..13791595 | 7..213 | 97 | -> | Plus |
2L | 13791665..13792393 | 214..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:27 Download gff for
BO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13791391..13791595 | 7..213 | 97 | -> | Plus |
arm_2L | 13791665..13792393 | 214..942 | 99 | | Plus |
BO12517.complete Sequence
1699 bp assembled on 2007-06-22
GenBank Submission: FJ632466
> BO12517.complete
GAAGTTATCAGTCGACATGATCAAGGCGGCTGCTGAGGATCGCATCTCAA
CAAAGAGCGTCGGGTATGCGTGGGTCTCTCCGGAGGCCACAGTGTCCCGA
ACGGAGACGGTTGGCGGCGACGATATCATCGAGTTCGAACCCAAGGAGGA
GCTCGATGAGTCGGAGAAAAGCCCACTTCCCCAAATTCATGCTGTACCAT
TTGCCGGCCATGACAACTTAAAAATGGAAGAACCTCTGCCGAGCGAGAGT
CCGTTTCACAAGGACATTGCCTTCTTTGTCTGCCGTGACCGCCAGTCATT
GCAGATTGTGCAGGGCGAGGGATTCCAGCACCTAGTGAAAGTACTGTGCC
CCACCTACAGACCACCGAGTGCGGCGAAACTGGAGGCCATTATCTGCAGG
GAGTCGGAAGCGCAGAGGTCCAAGCTCTGCCAGCAGTTGGCCGACATCTC
GACACTCAGCCTAAGTTGCTCGGTGCACACGAATGCGGAGAGTCGAAGCT
GGATGGAGCTGGTGGCCCACTTTCACGAGGGGCGGCAACGAATCTCCCGA
ACTCTTTCTGTGCTGCGCCTTCCCGATCTTTTCACCTCCAACGATCTGGT
GGATCGCATGGACCAAGTGTGTCAGCGCTTCGACATTCCAAAGTCAAGGA
TCTGCTGCGTGTCGACAAGGAGCAGTCAACTACTGGAGGATGCGGTGACA
TCGTTCATGGGCGCTCATCATCATGTTCCCTGCTTCGCAGACCAATTGAA
TTCTATTTTAGAGGAGGTGGTGCAGCGCCCAGAAATACGTCATTTGCGCG
ACAAGGTGCGTTCCCATGTGCAGTCCACATTGCAGCTGAATCCCCAACTG
GATTCCATACACCGACCGATTAGTGTGTACAATATGCTAGACTTATACCT
GAAACAGACTCTCGTTCAAGAGCCGCTGCCGCTTTCGACATCGGAGGTGG
ATTTGTGTCAGCAATTGCTGGACGTGCTGAGGCCGTTGACCAGCTCCATG
CGTGAGCTAAGTCGAACACCATATCCGGCGGCCAGCACAGCCCTGCCCAT
TGCCCAAACTCTGATCAACGAACTGAAGCAGGAGAAGAGTGCGGAACACA
TGGTTGCCAGGGAAATACGCTTGTTCCTGGTTCAGCAGCTGGAGGAGATC
TTCGAACGAATGGAGCGCAACTTGCACCTGGCATTGGCAAGTCTGCTGGA
CCCACGCTTTCGAAATATTCCCTTCCGGAGTGGGGCCCTGGTGGCCCAGT
ACATGACTCAACTCTATGACATGATGCAGGCGCATGTGGACAGCGGGGAG
CAAGCTGTTGCAAAGCATCCGGAGAACCGTGATCACTACGATATCTGGGC
GGCATTCAAATCCTTTTCGCATGGGAAGCAAAGGATTGTAAACGGCAGCA
ACGGTCCCGAGGCGGACGATGAGATAGCCAGATACTTTTGCGCCGGCATG
AGTACCCTGCGAGCCGATCCCTTTCAGCTCTGGGAGGAACTGGCCGAAGC
TCACCCCTTCCTGCACAACGTAGCACAGAGGTACCTGCACGTTCCGGCCA
CCGCAGAGCCGGCGGATCGGCTATTTACGGCCGAAGGAGCGGCGGTTGCG
GCGCAGTACGCCAGACTAATCGAAAACAACATGGAAAACATACTCTTCAT
GGCGGAAATTCCAACGAAGGAGTGGCAGTTAGCAAGCTTTCTAGACCAT
BO12517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16863-RA | 1668 | CG16863-PA | 1..1665 | 17..1681 | 8310 | 99.9 | Plus |
CG16863-RB | 1986 | CG16863-PB | 319..1983 | 17..1681 | 8310 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16863-RA | 2237 | CG16863-RA | 441..2105 | 17..1681 | 8310 | 99.9 | Plus |
CG16863-RB | 2184 | CG16863-RB | 388..2052 | 17..1681 | 8310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13791665..13793132 | 214..1681 | 7340 | 100 | Plus |
2L | 23513712 | 2L | 13791399..13791595 | 17..213 | 970 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:47:33 has no hits.
BO12517.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:18 Download gff for
BO12517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RA | 1..1668 | 17..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:55 Download gff for
BO12517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RA | 429..2105 | 7..1687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:23 Download gff for
BO12517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RB | 388..2052 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:18 Download gff for
BO12517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RA | 429..2105 | 7..1687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:29 Download gff for
BO12517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16863-RB | 388..2052 | 17..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:29 Download gff for
BO12517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13791399..13791595 | 17..213 | 99 | -> | Plus |
2L | 13791665..13793132 | 214..1683 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:23 Download gff for
BO12517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13791399..13791595 | 17..213 | 99 | -> | Plus |
arm_2L | 13791665..13793132 | 214..1683 | 99 | | Plus |
BO12517.pep Sequence
Translation from 16 to 1699
> BO12517.pep
MIKAAAEDRISTKSVGYAWVSPEATVSRTETVGGDDIIEFEPKEELDESE
KSPLPQIHAVPFAGHDNLKMEEPLPSESPFHKDIAFFVCRDRQSLQIVQG
EGFQHLVKVLCPTYRPPSAAKLEAIICRESEAQRSKLCQQLADISTLSLS
CSVHTNAESRSWMELVAHFHEGRQRISRTLSVLRLPDLFTSNDLVDRMDQ
VCQRFDIPKSRICCVSTRSSQLLEDAVTSFMGAHHHVPCFADQLNSILEE
VVQRPEIRHLRDKVRSHVQSTLQLNPQLDSIHRPISVYNMLDLYLKQTLV
QEPLPLSTSEVDLCQQLLDVLRPLTSSMRELSRTPYPAASTALPIAQTLI
NELKQEKSAEHMVAREIRLFLVQQLEEIFERMERNLHLALASLLDPRFRN
IPFRSGALVAQYMTQLYDMMQAHVDSGEQAVAKHPENRDHYDIWAAFKSF
SHGKQRIVNGSNGPEADDEIARYFCAGMSTLRADPFQLWEELAEAHPFLH
NVAQRYLHVPATAEPADRLFTAEGAAVAAQYARLIENNMENILFMAEIPT
KEWQLASFLDH
BO12517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16863-PA | 555 | CG16863-PA | 1..555 | 1..555 | 2866 | 100 | Plus |
CG16863-PB | 661 | CG16863-PB | 107..661 | 1..555 | 2866 | 100 | Plus |