Clone Sequence Records
BO12518.3prime Sequence
650 bp (649 high quality bases) assembled on 2006-05-08
> BO12518.3prime
ATGGTCTAGAAAGCTTGCGACCCTCACTTTGTAGCTGAGCTTCATCAGCT
TCTTGGAGCTGATCGGGCAATTTGGCCAGAGATTGGCGCACCCCATAGGT
CCGCTGAGATTGTCGCCAGTGTGACGCATGAGTTCGCCCATGTGGGCCGC
AAAATACCATTTGCTCGGCGGCATGTTCATCATCCAGGGCATTGTTGGAG
ATCTGATCAGTCTTAGCAGTTCCCGCTCCTTTTCGCTGAGTTGGTAATCC
GCCTTGGAGGCCAGTTCGCAGAGCATCTTGGGGAGACATGATTCCTTGAT
GGCGTCCGTGAGTTGGGACTTGGTCTTCAGACTAGCCCCAGTAACCACTG
CCATTCCAGGCTTGAGGGATTGAGCTGCTGCTGAGAGTTCATTGAAATCG
TGCTCTTCAGTTATGTCGATTTCGGCATTTTTGGTCTGGAACTTGCTGGC
CGCTGCAGCCGCCGGACCCGTTGGGGCACCACCCGGCACCGCGCCCCGCG
CCGATCTTACCGAGTGCGGATTGGGGTGGTTGGACTTCATGCCGCCGCCG
TATCCAAAAAGATCGCCCACAAGGAGCAGCGAGACGATAACGAAGATCAT
GAGGCGACAACGCCAGGCGGTGTCAATGAGAGCCATGTCGACTGATAACT
BO12518.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13695-PB | 621 | gk-RB | 1..618 | 636..19 | 3065 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-RB | 1318 | CG13695-RB | 388..1005 | 636..19 | 3075 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18139789..18140020 | 636..405 | 1160 | 100 | Minus |
3L | 28110227 | 3L | 18143500..18143703 | 406..203 | 1020 | 100 | Minus |
3L | 28110227 | 3L | 18144919..18145105 | 205..19 | 920 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:06:35 has no hits.
BO12518.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:38:02 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:37 Download gff for
BO12518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13695-PB | 1..621 | 18..636 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 22:00:18 Download gff for
BO12518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1009 | 13..636 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:54 Download gff for
BO12518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1009 | 13..636 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:54 Download gff for
BO12518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18139789..18140020 | 405..636 | 100 | -> | Minus |
3L | 18143502..18143703 | 203..404 | 100 | -> | Minus |
3L | 18144922..18145109 | 13..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 22:00:18 Download gff for
BO12518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18138022..18138209 | 13..202 | 97 | | Minus |
arm_3L | 18136602..18136803 | 203..404 | 100 | -> | Minus |
arm_3L | 18132889..18133120 | 405..636 | 100 | -> | Minus |
BO12518.5prime Sequence
650 bp (649 high quality bases) assembled on 2006-05-08
> BO12518.5prime
GAAGTTATCAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCC
TCATGATCTTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGA
TACGGCGGCGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATC
GGCGCGGGGCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAG
CGGCCAGCAAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAG
CACGATTTCAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAAT
GGCAGTGGTTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACG
CCATCAAGGAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAG
GCGGATTACCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAG
ATCTCCAACAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATT
TTGCGGCCCACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAGC
GGACCTATGGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAA
GAAGCTGATGAAGCTCAGCTACAAAGTGAGGGTCGCAAGCTTTCTAGACC
BO12518.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13695-PB | 621 | gk-RB | 1..618 | 17..634 | 3065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-RB | 1318 | CG13695-RB | 388..1005 | 17..634 | 3075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18139789..18140020 | 17..248 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 18143500..18143703 | 247..450 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 18144919..18145105 | 448..634 | 920 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:52:47 has no hits.
BO12518.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:38:03 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:38 Download gff for
BO12518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13695-PB | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:57 Download gff for
BO12518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1009 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:32 Download gff for
BO12518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1009 | 17..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:32 Download gff for
BO12518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18139789..18140020 | 17..248 | 100 | -> | Plus |
3L | 18143502..18143703 | 249..450 | 100 | -> | Plus |
3L | 18144922..18145109 | 451..640 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:57 Download gff for
BO12518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18132889..18133120 | 17..248 | 100 | -> | Plus |
arm_3L | 18136602..18136803 | 249..450 | 100 | -> | Plus |
arm_3L | 18138022..18138209 | 451..640 | 97 | | Plus |
BO12518.complete Sequence
652 bp assembled on 2006-10-11
GenBank Submission: FJ632467
> BO12518.complete
GAAGTTATCAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCC
TCATGATCTTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGA
TACGGCGGCGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATC
GGCGCGGGGCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAG
CGGCCAGCAAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAG
CACGATTTCAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAAT
GGCAGTGGTTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACG
CCATCAAGGAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAG
GCGGATTACCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAG
ATCTCCAACAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATT
TTGCGGCCCACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAGC
GGACCTATGGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAA
GAAGCTGATGAAGCTCAGCTACAAAGTGAGGGTCGCAAGCTTTCTAGACC
AT
BO12518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-RB | 621 | CG13695-PB | 1..618 | 17..634 | 3075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-RB | 1318 | CG13695-RB | 388..1005 | 17..634 | 3075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18139789..18140020 | 17..248 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 18143500..18143703 | 247..450 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 18144919..18145105 | 448..634 | 920 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:35:02 has no hits.
BO12518.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:50 Download gff for
BO12518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:00 Download gff for
BO12518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 386..1007 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:34 Download gff for
BO12518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1005 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:51 Download gff for
BO12518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gk-RB | 388..1005 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:51 Download gff for
BO12518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18139789..18140020 | 17..248 | 100 | -> | Plus |
3L | 18143502..18143703 | 249..450 | 100 | -> | Plus |
3L | 18144922..18145105 | 451..636 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:34 Download gff for
BO12518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18132889..18133120 | 17..248 | 100 | -> | Plus |
arm_3L | 18136602..18136803 | 249..450 | 100 | -> | Plus |
arm_3L | 18138022..18138205 | 451..636 | 98 | | Plus |
BO12518.pep Sequence
Translation from 16 to 652
> BO12518.pep
MALIDTAWRCRLMIFVIVSLLLVGDLFGYGGGMKSNHPNPHSVRSARGAV
PGGAPTGPAAAAASKFQTKNAEIDITEEHDFNELSAAAQSLKPGMAVVTG
ASLKTKSQLTDAIKESCLPKMLCELASKADYQLSEKERELLRLIRSPTMP
WMMNMPPSKWYFAAHMGELMRHTGDNLSGPMGCANLWPNCPISSKKLMKL
SYKVRVASFLDH
BO12518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gk-PB | 206 | CG13695-PB | 1..206 | 1..206 | 1081 | 100 | Plus |