Clone BO12518 Report

Search the DGRC for BO12518

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:18
Vector:pDNR-Dual
Associated Gene/Transcriptgk-RB
Protein status:BO12518.pep: validated full length
Sequenced Size:652

Clone Sequence Records

BO12518.3prime Sequence

650 bp (649 high quality bases) assembled on 2006-05-08

> BO12518.3prime
ATGGTCTAGAAAGCTTGCGACCCTCACTTTGTAGCTGAGCTTCATCAGCT
TCTTGGAGCTGATCGGGCAATTTGGCCAGAGATTGGCGCACCCCATAGGT
CCGCTGAGATTGTCGCCAGTGTGACGCATGAGTTCGCCCATGTGGGCCGC
AAAATACCATTTGCTCGGCGGCATGTTCATCATCCAGGGCATTGTTGGAG
ATCTGATCAGTCTTAGCAGTTCCCGCTCCTTTTCGCTGAGTTGGTAATCC
GCCTTGGAGGCCAGTTCGCAGAGCATCTTGGGGAGACATGATTCCTTGAT
GGCGTCCGTGAGTTGGGACTTGGTCTTCAGACTAGCCCCAGTAACCACTG
CCATTCCAGGCTTGAGGGATTGAGCTGCTGCTGAGAGTTCATTGAAATCG
TGCTCTTCAGTTATGTCGATTTCGGCATTTTTGGTCTGGAACTTGCTGGC
CGCTGCAGCCGCCGGACCCGTTGGGGCACCACCCGGCACCGCGCCCCGCG
CCGATCTTACCGAGTGCGGATTGGGGTGGTTGGACTTCATGCCGCCGCCG
TATCCAAAAAGATCGCCCACAAGGAGCAGCGAGACGATAACGAAGATCAT
GAGGCGACAACGCCAGGCGGTGTCAATGAGAGCCATGTCGACTGATAACT

BO12518.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13695-PB 621 gk-RB 1..618 636..19 3065 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
gk-RB 1318 CG13695-RB 388..1005 636..19 3075 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18139789..18140020 636..405 1160 100 Minus
3L 28110227 3L 18143500..18143703 406..203 1020 100 Minus
3L 28110227 3L 18144919..18145105 205..19 920 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 17:06:35 has no hits.

BO12518.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:38:02 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:37 Download gff for BO12518.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13695-PB 1..621 18..636 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 22:00:18 Download gff for BO12518.3prime
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1009 13..636 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:54 Download gff for BO12518.3prime
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1009 13..636 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:54 Download gff for BO12518.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18139789..18140020 405..636 100 -> Minus
3L 18143502..18143703 203..404 100 -> Minus
3L 18144922..18145109 13..202 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 22:00:18 Download gff for BO12518.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18138022..18138209 13..202 97   Minus
arm_3L 18136602..18136803 203..404 100 -> Minus
arm_3L 18132889..18133120 405..636 100 -> Minus

BO12518.5prime Sequence

650 bp (649 high quality bases) assembled on 2006-05-08

> BO12518.5prime
GAAGTTATCAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCC
TCATGATCTTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGA
TACGGCGGCGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATC
GGCGCGGGGCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAG
CGGCCAGCAAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAG
CACGATTTCAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAAT
GGCAGTGGTTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACG
CCATCAAGGAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAG
GCGGATTACCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAG
ATCTCCAACAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATT
TTGCGGCCCACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAGC
GGACCTATGGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAA
GAAGCTGATGAAGCTCAGCTACAAAGTGAGGGTCGCAAGCTTTCTAGACC

BO12518.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13695-PB 621 gk-RB 1..618 17..634 3065 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
gk-RB 1318 CG13695-RB 388..1005 17..634 3075 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18139789..18140020 17..248 1160 100 Plus
3L 28110227 3L 18143500..18143703 247..450 1020 100 Plus
3L 28110227 3L 18144919..18145105 448..634 920 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 23:52:47 has no hits.

BO12518.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:38:03 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:38 Download gff for BO12518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13695-PB 1..621 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:57 Download gff for BO12518.5prime
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1009 17..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:32 Download gff for BO12518.5prime
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1009 17..640 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:32 Download gff for BO12518.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18139789..18140020 17..248 100 -> Plus
3L 18143502..18143703 249..450 100 -> Plus
3L 18144922..18145109 451..640 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:57 Download gff for BO12518.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18132889..18133120 17..248 100 -> Plus
arm_3L 18136602..18136803 249..450 100 -> Plus
arm_3L 18138022..18138209 451..640 97   Plus

BO12518.complete Sequence

652 bp assembled on 2006-10-11

GenBank Submission: FJ632467

> BO12518.complete
GAAGTTATCAGTCGACATGGCTCTCATTGACACCGCCTGGCGTTGTCGCC
TCATGATCTTCGTTATCGTCTCGCTGCTCCTTGTGGGCGATCTTTTTGGA
TACGGCGGCGGCATGAAGTCCAACCACCCCAATCCGCACTCGGTAAGATC
GGCGCGGGGCGCGGTGCCGGGTGGTGCCCCAACGGGTCCGGCGGCTGCAG
CGGCCAGCAAGTTCCAGACCAAAAATGCCGAAATCGACATAACTGAAGAG
CACGATTTCAATGAACTCTCAGCAGCAGCTCAATCCCTCAAGCCTGGAAT
GGCAGTGGTTACTGGGGCTAGTCTGAAGACCAAGTCCCAACTCACGGACG
CCATCAAGGAATCATGTCTCCCCAAGATGCTCTGCGAACTGGCCTCCAAG
GCGGATTACCAACTCAGCGAAAAGGAGCGGGAACTGCTAAGACTGATCAG
ATCTCCAACAATGCCCTGGATGATGAACATGCCGCCGAGCAAATGGTATT
TTGCGGCCCACATGGGCGAACTCATGCGTCACACTGGCGACAATCTCAGC
GGACCTATGGGGTGCGCCAATCTCTGGCCAAATTGCCCGATCAGCTCCAA
GAAGCTGATGAAGCTCAGCTACAAAGTGAGGGTCGCAAGCTTTCTAGACC
AT

BO12518.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
gk-RB 621 CG13695-PB 1..618 17..634 3075 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
gk-RB 1318 CG13695-RB 388..1005 17..634 3075 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18139789..18140020 17..248 1160 100 Plus
3L 28110227 3L 18143500..18143703 247..450 1020 100 Plus
3L 28110227 3L 18144919..18145105 448..634 920 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 23:35:02 has no hits.

BO12518.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:50 Download gff for BO12518.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 1..621 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:00 Download gff for BO12518.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 386..1007 17..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:34 Download gff for BO12518.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1005 17..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:51 Download gff for BO12518.complete
Subject Subject Range Query Range Percent Splice Strand
gk-RB 388..1005 17..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:51 Download gff for BO12518.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18139789..18140020 17..248 100 -> Plus
3L 18143502..18143703 249..450 100 -> Plus
3L 18144922..18145105 451..636 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:34 Download gff for BO12518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18132889..18133120 17..248 100 -> Plus
arm_3L 18136602..18136803 249..450 100 -> Plus
arm_3L 18138022..18138205 451..636 98   Plus

BO12518.pep Sequence

Translation from 16 to 652

> BO12518.pep
MALIDTAWRCRLMIFVIVSLLLVGDLFGYGGGMKSNHPNPHSVRSARGAV
PGGAPTGPAAAAASKFQTKNAEIDITEEHDFNELSAAAQSLKPGMAVVTG
ASLKTKSQLTDAIKESCLPKMLCELASKADYQLSEKERELLRLIRSPTMP
WMMNMPPSKWYFAAHMGELMRHTGDNLSGPMGCANLWPNCPISSKKLMKL
SYKVRVASFLDH

BO12518.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
gk-PB 206 CG13695-PB 1..206 1..206 1081 100 Plus