Clone BO12519 Report

Search the DGRC for BO12519

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptolf186-F-RA
Protein status:BO12519.pep: validated full length
Sequenced Size:1087

Clone Sequence Records

BO12519.3prime Sequence

810 bp (783 high quality bases) assembled on 2006-05-08

> BO12519.3prime
ATGGTCTAGAAAGCTTGCGACAATGTCCCCGGATGCGCCATAGTTCATGC
CATTATTTCGTATGTTATTGTGATGCTCCAAATGATCCTGCTCCATCTGC
TCCTTGAGCATCTCCAGCTCACGGATGCCCGAGACTGTCACCTCATATTT
GTGCGACACCAGGGAGCGATAGAAGTGAATGGCGAAGGCCATAAAGATGA
TCATCACCGGTATGAGGACCACACACGCTGACCAAGCCGCCGGCGGACTT
AGGTCATAGAATTTCACCCAGCACAGGATGGCTATCTCCAGTAGAAAGAG
TATGAGTCCCAGCAGCGTGGAGAATGCCCACGCCGTTTCAATGTACCAAT
GGAGACGCTCGTGTGGCGATTCGTGGACCAGGGAAATACTATGCAAATTA
CACACCGTCTCAATATTTGGCAGGATACAGGTGCTGATCATCAGGGCCAG
CATGTGCACCGCCACCAGGAGGGTGGTGCAGATGGCGAAGGCTATCAGCA
TGCCCGGTGGTACATTCGTATCGTGATCCAGTTGCACCTCCACCATCGCC
ACCATGGCGAATCCGGAGAGCAGGGCGGACGTCTTGCTGGATGCCTTTAG
CTTGGCCCGACTAAGCTGGAGCTTCCGCCAGGACAGGTAGGTGGGCGAGT
GGAGATCCTCGCCGGACTGCGACATGCTGCTGCTGGCGGTGCGATGGTGT
CCGCGCGGCTTCGCCTGGTTCTGTGAGGAAGGGGGCGGGGGCGGCGGGAA
CTGCAGCAGCGAGTTGCTGATGCTGGTGCGCTGGAAACCTGCGCTGTTGT
TGCTGTTGCT

BO12519.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11430-PB 1056 olf186-F-RB 262..1053 810..19 3960 100 Minus
CG11430-PA 1056 olf186-F-RA 262..1053 810..19 3960 100 Minus
CG11430-PD 660 olf186-F-RD 1..657 675..19 3285 100 Minus
CG11430-PC 399 olf186-F-RC 262..363 810..709 510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-RF 2407 CG11430-RF 825..1616 810..19 3960 100 Minus
olf186-F-RA 2080 CG11430-RA 498..1289 810..19 3960 100 Minus
olf186-F-RB 2632 CG11430-RB 1050..1841 810..19 3960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17859257..17859791 553..19 2675 100 Minus
2R 25286936 2R 17857640..17857800 710..550 805 100 Minus
2R 25286936 2R 17851359..17851460 810..709 510 100 Minus
Blast to na_te.dros performed 2015-02-12 03:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6882 810..675 156 61.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6915 810..675 151 61.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6819 810..752 129 77 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2467 810..675 122 59.4 Minus

BO12519.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:04 Download gff for BO12519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11430-PB 262..1056 18..810 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:39 Download gff for BO12519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11430-PA 262..1056 18..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:51:45 Download gff for BO12519.3prime
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 1050..1845 13..810 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:56 Download gff for BO12519.3prime
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 1050..1845 13..810 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:56 Download gff for BO12519.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17851359..17851460 709..810 100 -> Minus
2R 17857642..17857797 553..708 100 -> Minus
2R 17859258..17859795 13..552 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:51:45 Download gff for BO12519.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13738864..13738965 709..810 100 -> Minus
arm_2R 13745147..13745302 553..708 100 -> Minus
arm_2R 13746763..13747300 13..552 99   Minus

BO12519.5prime Sequence

841 bp (755 high quality bases) assembled on 2006-05-08

> BO12519.5prime
GAAGTTATCAGTCGACATGTCTGTGTGGACCACGGCCAACAATTCGGGCC
TAGAGACGCCAACAAAGTCGCCGATCACGTCGTCGGTTCCGCGGGCAGCG
AGAAGTTCTGCAGTGATCACCACTGGAAATCACCAGCAGCACCACTTCCA
GCACGTTGTGGCCGCCGCCGTTGCAGCCGCCACTTCAGTGGCCACCGGTC
ATCAGTTCCAGCAACAGTTCCCGCTGCACGCACATCCGCATCCACAGCAC
CACAGCAACAGTCCCACGGGTAGCGGCAGCAACAGCAACAACAGCGCAGG
TTTCCAGCGCACCAGCATCAGCAACTCGCTGCTGCAGTTCCCGCCGCCCC
CGCCCCCTTCCTCACAGAACCAGGCGAAGCCGCGCGGACACCATCGCACC
GCCAGCAGCAGCATGTCGCAGTCCGGCGAGGATCTCCACTCGCCCACCTA
CCTGTCCTGGCGGAAGCTCCAGCTTAGTCGGGCCAAGCTAAAGGCATCCA
GCAAGACGTCCGCCCTGCTCTCCGGATTCGCCATGGTGGCGATGGTGGAG
GTGCAACTGGATCACGATACGAATGTACCACCGGGCATGCTGATAGCCTT
CGCCATCTGCACCACCCTCCTGGTGGCGGTGCACATGCTGGCCCTGATGA
TCAGCACCTGTATCCTGCCAAATATTGAGACGGTGTGTAATTTGCATAGT
ATTTCCCTGGTCCACGAATCGCCACACGAGCGTCTCCATTGGTACATTGA
AACGGCGTGGGCATTCTCCACGCTGCTGGGACTCATACTCTTTCTACTGG
AGATAGCCATCCTGTGCTGGGTGAAATTCTATGACCTAAGT

BO12519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11430-PB 1056 olf186-F-RB 1..825 17..841 4125 100 Plus
CG11430-PA 1056 olf186-F-RA 1..825 17..841 4125 100 Plus
CG11430-PD 660 olf186-F-RD 1..429 413..841 2145 100 Plus
CG11430-PC 399 olf186-F-RC 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-RF 2407 CG11430-RF 563..1388 16..841 4130 100 Plus
olf186-F-RA 2080 CG11430-RA 236..1061 16..841 4130 100 Plus
olf186-F-RB 2632 CG11430-RB 788..1613 16..841 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17851097..17851460 16..379 1820 100 Plus
2R 25286936 2R 17859257..17859563 535..841 1535 100 Plus
2R 25286936 2R 17857640..17857800 378..538 805 100 Plus
Blast to na_te.dros performed 2015-02-04 03:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6958 127..358 253 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6952 95..321 247 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6915 212..413 222 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6887 174..325 205 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6862 200..327 203 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2518 200..413 192 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2505 129..325 189 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2498 221..414 185 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6819 232..336 183 71.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6882 272..413 177 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2539 200..413 166 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2424 209..325 164 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2857 211..326 162 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2467 250..413 154 59 Plus
roo 9092 roo DM_ROO 9092bp 1059..1155 201..296 140 61.9 Plus
roo 9092 roo DM_ROO 9092bp 1052..1148 234..325 137 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2588..2643 270..325 118 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2437..2668 94..326 117 55.4 Plus
roo 9092 roo DM_ROO 9092bp 1062..1115 272..325 116 75 Plus

BO12519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:05 Download gff for BO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11430-PB 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:41 Download gff for BO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11430-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:25 Download gff for BO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 788..1613 16..841 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:18 Download gff for BO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 788..1613 16..841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:18 Download gff for BO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17851097..17851460 16..379 100 -> Plus
2R 17857642..17857797 380..535 100 -> Plus
2R 17859258..17859563 536..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:25 Download gff for BO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13738602..13738965 16..379 100 -> Plus
arm_2R 13745147..13745302 380..535 100 -> Plus
arm_2R 13746763..13747068 536..841 100   Plus

BO12519.complete Sequence

1087 bp assembled on 2006-10-11

GenBank Submission: FJ632468

> BO12519.complete
GAAGTTATCAGTCGACATGTCTGTGTGGACCACGGCCAACAATTCGGGCC
TAGAGACGCCAACAAAGTCGCCGATCACGTCGTCGGTTCCGCGGGCAGCG
AGAAGTTCTGCAGTGATCACCACTGGAAATCACCAGCAGCACCACTTCCA
GCACGTTGTGGCCGCCGCCGTTGCAGCCGCCACTTCAGTGGCCACCGGTC
ATCAGTTCCAGCAACAGTTCCCGCTGCACGCACATCCGCATCCACAGCAC
CACAGCAACAGTCCCACGGGTAGCGGCAGCAACAGCAACAACAGCGCAGG
TTTCCAGCGCACCAGCATCAGCAACTCGCTGCTGCAGTTCCCGCCGCCCC
CGCCCCCTTCCTCACAGAACCAGGCGAAGCCGCGCGGACACCATCGCACC
GCCAGCAGCAGCATGTCGCAGTCCGGCGAGGATCTCCACTCGCCCACCTA
CCTGTCCTGGCGGAAGCTCCAGCTTAGTCGGGCCAAGCTAAAGGCATCCA
GCAAGACGTCCGCCCTGCTCTCCGGATTCGCCATGGTGGCGATGGTGGAG
GTGCAACTGGATCACGATACGAATGTACCACCGGGCATGCTGATAGCCTT
CGCCATCTGCACCACCCTCCTGGTGGCGGTGCACATGCTGGCCCTGATGA
TCAGCACCTGTATCCTGCCAAATATTGAGACGGTGTGTAATTTGCATAGT
ATTTCCCTGGTCCACGAATCGCCACACGAGCGTCTCCATTGGTACATTGA
AACGGCGTGGGCATTCTCCACGCTGCTGGGACTCATACTCTTTCTACTGG
AGATAGCCATCCTGTGCTGGGTGAAATTCTATGACCTAAGTCCGCCGGCG
GCTTGGTCAGCGTGTGTGGTCCTCATACCGGTGATGATCATCTTTATGGC
CTTCGCCATTCACTTCTATCGCTCCCTGGTGTCGCACAAATATGAGGTGA
CAGTCTCGGGCATCCGTGAGCTGGAGATGCTCAAGGAGCAGATGGAGCAG
GATCATTTGGAGCATCACAATAACATACGAAATAATGGCATGAACTATGG
CGCATCCGGGGACATTGTCGCAAGCTTTCTAGACCAT

BO12519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-RF 1056 CG11430-PF 1..1053 17..1069 5265 100 Plus
olf186-F-RA 1056 CG11430-PA 1..1053 17..1069 5265 100 Plus
olf186-F-RB 1056 CG11430-PB 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-RF 2407 CG11430-RF 563..1616 16..1069 5270 100 Plus
olf186-F-RA 2080 CG11430-RA 236..1289 16..1069 5270 100 Plus
olf186-F-RB 2632 CG11430-RB 788..1841 16..1069 5270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17859257..17859791 535..1069 2675 100 Plus
2R 25286936 2R 17851097..17851460 16..379 1820 100 Plus
2R 25286936 2R 17857640..17857800 378..538 805 100 Plus
Blast to na_te.dros performed 2014-11-27 20:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6958 127..358 253 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6952 95..321 247 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6915 212..413 222 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6887 174..325 205 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6862 200..327 203 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2518 200..413 192 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2505 129..325 189 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2498 221..414 185 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6819 232..336 183 71.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6882 272..413 177 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2539 200..413 166 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2424 209..325 164 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2857 211..326 162 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2467 250..413 154 59 Plus
roo 9092 roo DM_ROO 9092bp 1059..1155 201..296 140 61.9 Plus
roo 9092 roo DM_ROO 9092bp 1052..1148 234..325 137 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2588..2643 270..325 118 67.9 Plus

BO12519.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:51 Download gff for BO12519.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 1..1056 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:01 Download gff for BO12519.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 219..1276 16..1075 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:52 Download gff for BO12519.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 789..1841 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:51 Download gff for BO12519.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 219..1276 16..1075 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:14 Download gff for BO12519.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 789..1841 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:14 Download gff for BO12519.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17851098..17851460 17..379 100 -> Plus
2R 17857642..17857797 380..535 100 -> Plus
2R 17859258..17859791 536..1071 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:52 Download gff for BO12519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13738603..13738965 17..379 100 -> Plus
arm_2R 13745147..13745302 380..535 100 -> Plus
arm_2R 13746763..13747296 536..1071 99   Plus

BO12519.pep Sequence

Translation from 16 to 1087

> BO12519.pep
MSVWTTANNSGLETPTKSPITSSVPRAARSSAVITTGNHQQHHFQHVVAA
AVAAATSVATGHQFQQQFPLHAHPHPQHHSNSPTGSGSNSNNSAGFQRTS
ISNSLLQFPPPPPPSSQNQAKPRGHHRTASSSMSQSGEDLHSPTYLSWRK
LQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTT
LLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYIETAWAF
STLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFMAFAIHF
YRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNYGASGDI
VASFLDH

BO12519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-PF 351 CG11430-PF 1..351 1..351 1838 100 Plus
olf186-F-PA 351 CG11430-PA 1..351 1..351 1838 100 Plus
olf186-F-PB 351 CG11430-PB 1..351 1..351 1838 100 Plus
olf186-F-PG 507 CG11430-PG 256..507 108..351 1208 94 Plus
olf186-F-PE 507 CG11430-PE 256..507 108..351 1208 94 Plus