Clone BO12520 Report

Search the DGRC for BO12520

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG13827-RA
Protein status:BO12520.pep: validated full length
Sequenced Size:733

Clone Sequence Records

BO12520.3prime Sequence

731 bp (730 high quality bases) assembled on 2006-05-08

> BO12520.3prime
ATGGTCTAGAAAGCTTGCCTTGTTCAGTCTTCTCTTGGCAAAGATCTGGT
AGATGCCCAGGCCAGCGGATAAGGTGCCAATAGCACCCACCTGCAGGGTG
GACAGCTTGCCGCCCCACAAATATCCTTTCGGCAGCGTGCTGACGGCGTG
CACAAAGTCGAGTGAGATCCGAACGATGGACACCATCTCCAGGCGGTGCT
TGGTCAACGTTTTCACATCCAATTCGTTTATATTATTCGTTCGGTTCAGC
TTTTCCTGATTCAGTGAAAAATTCCGCATTGTCCTCATGAGGTTCAGGTA
CACCGAAAGCACCCAGAATATGGAGTTGACATTGTCCCAGTTATCCGCAT
TCTTGACATCCACAATCTTGTGCTCGGCCAGCCAGCACACCTTCTCGATG
GGATAGTAGAGCAAATCCACAATGTTGGCCGTCACTCCCAGCACTTGCAT
GACGCGATCGGGCTCATTCTCGCCCAAGCCATACTCCAAAGCATATTGGA
TCATGGGTATGTCGTCGATGAGACGCAGTGTGGCTCTCGCACCTGAGATC
CTTGAGCTGGCGGTGGCGTATCGCTTGGCTAGTTCCGGATTCCGCTTGGC
ATGGTAGCCAGCCACCAGTTTGGCACTGTAGCACAATGCCTTCATCACCT
TATCTCGCCCGCCATAGGAATCGATAATATCACAGAACTCGTTCACAAAC
TTTGTCGTGGTGCCCATGTCGACTGATAACT

BO12520.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-PA 702 CG13827-RA 1..699 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-RA 989 CG13827-RA 114..812 717..19 3495 100 Minus
CG13827-RB 909 CG13827-RB 100..732 651..19 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23259675..23260042 650..283 1840 100 Minus
3R 32079331 3R 23260221..23260425 223..19 1025 100 Minus
3R 32079331 3R 23258478..23258548 717..647 355 100 Minus
3R 32079331 3R 23260100..23260161 285..224 310 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:51:10 has no hits.

BO12520.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:06 Download gff for BO12520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-PA 1..702 18..717 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:42 Download gff for BO12520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-PA 1..702 18..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:26 Download gff for BO12520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 107..812 19..724 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:17 Download gff for BO12520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 107..812 19..724 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:17 Download gff for BO12520.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23258471..23258546 649..724 94 -> Minus
3R 23259677..23260041 284..648 100 -> Minus
3R 23260102..23260161 224..283 100 -> Minus
3R 23260221..23260425 19..223 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:26 Download gff for BO12520.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19084193..19084268 649..724 94 -> Minus
arm_3R 19085399..19085763 284..648 100 -> Minus
arm_3R 19085824..19085883 224..283 100 -> Minus
arm_3R 19085943..19086147 19..223 100   Minus

BO12520.5prime Sequence

731 bp (730 high quality bases) assembled on 2006-05-08

> BO12520.5prime
GAAGTTATCAGTCGACATGGGCACCACGACAAAGTTTGTGAACGAGTTCT
GTGATATTATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTG
TGCTACAGTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGA
ACTAGCCAAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAG
CCACACTGCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAG
TATGGCTTGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGT
GACGGCCAACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCT
GGCTGGCCGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGAC
AATGTCAACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAG
GACAATGCGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATA
ATATAAACGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATG
GTGTCCATCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCT
GCCGAAAGGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTG
CTATTGGCACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAG
AGAAGACTGAACAAGGCAAGCTTTCTAGACC

BO12520.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-PA 702 CG13827-RA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-RA 989 CG13827-RA 114..812 17..715 3495 100 Plus
CG13827-RB 909 CG13827-RB 100..732 83..715 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23259675..23260042 84..451 1840 100 Plus
3R 32079331 3R 23260221..23260425 511..715 1025 100 Plus
3R 32079331 3R 23258478..23258548 17..87 355 100 Plus
3R 32079331 3R 23260100..23260161 449..510 310 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:25:46 has no hits.

BO12520.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:07 Download gff for BO12520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-PA 1..702 17..716 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:43 Download gff for BO12520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-PA 1..702 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:41 Download gff for BO12520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 107..812 10..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:58 Download gff for BO12520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 107..812 10..715 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:58 Download gff for BO12520.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23258471..23258546 10..85 94 -> Plus
3R 23259677..23260041 86..450 100 -> Plus
3R 23260102..23260161 451..510 100 -> Plus
3R 23260221..23260425 511..715 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:41 Download gff for BO12520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19084193..19084268 10..85 94 -> Plus
arm_3R 19085399..19085763 86..450 100 -> Plus
arm_3R 19085824..19085883 451..510 100 -> Plus
arm_3R 19085943..19086147 511..715 100   Plus

BO12520.complete Sequence

733 bp assembled on 2006-10-11

GenBank Submission: FJ632469

> BO12520.complete
GAAGTTATCAGTCGACATGGGCACCACGACAAAGTTTGTGAACGAGTTCT
GTGATATTATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTG
TGCTACAGTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGA
ACTAGCCAAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAG
CCACACTGCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAG
TATGGCTTGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGT
GACGGCCAACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCT
GGCTGGCCGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGAC
AATGTCAACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAG
GACAATGCGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATA
ATATAAACGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATG
GTGTCCATCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCT
GCCGAAAGGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTG
CTATTGGCACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAG
AGAAGACTGAACAAGGCAAGCTTTCTAGACCAT

BO12520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-RA 702 CG13827-PA 1..699 17..715 3495 100 Plus
CG13827-RB 705 CG13827-PB 70..702 83..715 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-RA 989 CG13827-RA 114..812 17..715 3495 100 Plus
CG13827-RB 909 CG13827-RB 100..732 83..715 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23259675..23260042 84..451 1840 100 Plus
3R 32079331 3R 23260221..23260425 511..715 1025 100 Plus
3R 32079331 3R 23258478..23258548 17..87 355 100 Plus
3R 32079331 3R 23260100..23260161 449..510 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:20:48 has no hits.

BO12520.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:52 Download gff for BO12520.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 1..702 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:03 Download gff for BO12520.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 103..808 10..715 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:02 Download gff for BO12520.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 114..812 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:52 Download gff for BO12520.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 103..808 10..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:20 Download gff for BO12520.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 114..812 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:20 Download gff for BO12520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23258478..23258546 17..85 100 -> Plus
3R 23259677..23260041 86..450 100 -> Plus
3R 23260102..23260161 451..510 100 -> Plus
3R 23260221..23260425 511..717 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:02 Download gff for BO12520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19084200..19084268 17..85 100 -> Plus
arm_3R 19085399..19085763 86..450 100 -> Plus
arm_3R 19085824..19085883 451..510 100 -> Plus
arm_3R 19085943..19086147 511..717 99   Plus

BO12520.pep Sequence

Translation from 16 to 733

> BO12520.pep
MGTTTKFVNEFCDIIDSYGGRDKVMKALCYSAKLVAGYHAKRNPELAKRY
ATASSRISGARATLRLIDDIPMIQYALEYGLGENEPDRVMQVLGVTANIV
DLLYYPIEKVCWLAEHKIVDVKNADNWDNVNSIFWVLSVYLNLMRTMRNF
SLNQEKLNRTNNINELDVKTLTKHRLEMVSIVRISLDFVHAVSTLPKGYL
WGGKLSTLQVGAIGTLSAGLGIYQIFAKRRLNKASFLDH

BO12520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-PA 233 CG13827-PA 1..233 1..233 1202 100 Plus
CG13827-PB 234 CG13827-PB 24..234 23..233 1081 100 Plus
CG33474-PB 201 CG33474-PB 3..201 6..233 415 39 Plus
CG33474-PA 201 CG33474-PA 3..201 6..233 415 39 Plus