Clone Sequence Records
BO12520.3prime Sequence
731 bp (730 high quality bases) assembled on 2006-05-08
> BO12520.3prime
ATGGTCTAGAAAGCTTGCCTTGTTCAGTCTTCTCTTGGCAAAGATCTGGT
AGATGCCCAGGCCAGCGGATAAGGTGCCAATAGCACCCACCTGCAGGGTG
GACAGCTTGCCGCCCCACAAATATCCTTTCGGCAGCGTGCTGACGGCGTG
CACAAAGTCGAGTGAGATCCGAACGATGGACACCATCTCCAGGCGGTGCT
TGGTCAACGTTTTCACATCCAATTCGTTTATATTATTCGTTCGGTTCAGC
TTTTCCTGATTCAGTGAAAAATTCCGCATTGTCCTCATGAGGTTCAGGTA
CACCGAAAGCACCCAGAATATGGAGTTGACATTGTCCCAGTTATCCGCAT
TCTTGACATCCACAATCTTGTGCTCGGCCAGCCAGCACACCTTCTCGATG
GGATAGTAGAGCAAATCCACAATGTTGGCCGTCACTCCCAGCACTTGCAT
GACGCGATCGGGCTCATTCTCGCCCAAGCCATACTCCAAAGCATATTGGA
TCATGGGTATGTCGTCGATGAGACGCAGTGTGGCTCTCGCACCTGAGATC
CTTGAGCTGGCGGTGGCGTATCGCTTGGCTAGTTCCGGATTCCGCTTGGC
ATGGTAGCCAGCCACCAGTTTGGCACTGTAGCACAATGCCTTCATCACCT
TATCTCGCCCGCCATAGGAATCGATAATATCACAGAACTCGTTCACAAAC
TTTGTCGTGGTGCCCATGTCGACTGATAACT
BO12520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-PA | 702 | CG13827-RA | 1..699 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-RA | 989 | CG13827-RA | 114..812 | 717..19 | 3495 | 100 | Minus |
CG13827-RB | 909 | CG13827-RB | 100..732 | 651..19 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23259675..23260042 | 650..283 | 1840 | 100 | Minus |
3R | 32079331 | 3R | 23260221..23260425 | 223..19 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 23258478..23258548 | 717..647 | 355 | 100 | Minus |
3R | 32079331 | 3R | 23260100..23260161 | 285..224 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:51:10 has no hits.
BO12520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:06 Download gff for
BO12520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-PA | 1..702 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:42 Download gff for
BO12520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-PA | 1..702 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:26 Download gff for
BO12520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 107..812 | 19..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:17 Download gff for
BO12520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 107..812 | 19..724 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:17 Download gff for
BO12520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23258471..23258546 | 649..724 | 94 | -> | Minus |
3R | 23259677..23260041 | 284..648 | 100 | -> | Minus |
3R | 23260102..23260161 | 224..283 | 100 | -> | Minus |
3R | 23260221..23260425 | 19..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:26 Download gff for
BO12520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19084193..19084268 | 649..724 | 94 | -> | Minus |
arm_3R | 19085399..19085763 | 284..648 | 100 | -> | Minus |
arm_3R | 19085824..19085883 | 224..283 | 100 | -> | Minus |
arm_3R | 19085943..19086147 | 19..223 | 100 | | Minus |
BO12520.5prime Sequence
731 bp (730 high quality bases) assembled on 2006-05-08
> BO12520.5prime
GAAGTTATCAGTCGACATGGGCACCACGACAAAGTTTGTGAACGAGTTCT
GTGATATTATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTG
TGCTACAGTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGA
ACTAGCCAAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAG
CCACACTGCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAG
TATGGCTTGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGT
GACGGCCAACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCT
GGCTGGCCGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGAC
AATGTCAACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAG
GACAATGCGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATA
ATATAAACGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATG
GTGTCCATCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCT
GCCGAAAGGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTG
CTATTGGCACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAG
AGAAGACTGAACAAGGCAAGCTTTCTAGACC
BO12520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-PA | 702 | CG13827-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-RA | 989 | CG13827-RA | 114..812 | 17..715 | 3495 | 100 | Plus |
CG13827-RB | 909 | CG13827-RB | 100..732 | 83..715 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23259675..23260042 | 84..451 | 1840 | 100 | Plus |
3R | 32079331 | 3R | 23260221..23260425 | 511..715 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 23258478..23258548 | 17..87 | 355 | 100 | Plus |
3R | 32079331 | 3R | 23260100..23260161 | 449..510 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:25:46 has no hits.
BO12520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:07 Download gff for
BO12520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-PA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:43 Download gff for
BO12520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-PA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:41 Download gff for
BO12520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 107..812 | 10..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:58 Download gff for
BO12520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 107..812 | 10..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:58 Download gff for
BO12520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23258471..23258546 | 10..85 | 94 | -> | Plus |
3R | 23259677..23260041 | 86..450 | 100 | -> | Plus |
3R | 23260102..23260161 | 451..510 | 100 | -> | Plus |
3R | 23260221..23260425 | 511..715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:41 Download gff for
BO12520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19084193..19084268 | 10..85 | 94 | -> | Plus |
arm_3R | 19085399..19085763 | 86..450 | 100 | -> | Plus |
arm_3R | 19085824..19085883 | 451..510 | 100 | -> | Plus |
arm_3R | 19085943..19086147 | 511..715 | 100 | | Plus |
BO12520.complete Sequence
733 bp assembled on 2006-10-11
GenBank Submission: FJ632469
> BO12520.complete
GAAGTTATCAGTCGACATGGGCACCACGACAAAGTTTGTGAACGAGTTCT
GTGATATTATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTG
TGCTACAGTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGA
ACTAGCCAAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAG
CCACACTGCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAG
TATGGCTTGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGT
GACGGCCAACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCT
GGCTGGCCGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGAC
AATGTCAACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAG
GACAATGCGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATA
ATATAAACGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATG
GTGTCCATCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCT
GCCGAAAGGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTG
CTATTGGCACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAG
AGAAGACTGAACAAGGCAAGCTTTCTAGACCAT
BO12520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-RA | 702 | CG13827-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
CG13827-RB | 705 | CG13827-PB | 70..702 | 83..715 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-RA | 989 | CG13827-RA | 114..812 | 17..715 | 3495 | 100 | Plus |
CG13827-RB | 909 | CG13827-RB | 100..732 | 83..715 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23259675..23260042 | 84..451 | 1840 | 100 | Plus |
3R | 32079331 | 3R | 23260221..23260425 | 511..715 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 23258478..23258548 | 17..87 | 355 | 100 | Plus |
3R | 32079331 | 3R | 23260100..23260161 | 449..510 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:20:48 has no hits.
BO12520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:52 Download gff for
BO12520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:03 Download gff for
BO12520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 103..808 | 10..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:02 Download gff for
BO12520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 114..812 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:52 Download gff for
BO12520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 103..808 | 10..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:20 Download gff for
BO12520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 114..812 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:20 Download gff for
BO12520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23258478..23258546 | 17..85 | 100 | -> | Plus |
3R | 23259677..23260041 | 86..450 | 100 | -> | Plus |
3R | 23260102..23260161 | 451..510 | 100 | -> | Plus |
3R | 23260221..23260425 | 511..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:02 Download gff for
BO12520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19084200..19084268 | 17..85 | 100 | -> | Plus |
arm_3R | 19085399..19085763 | 86..450 | 100 | -> | Plus |
arm_3R | 19085824..19085883 | 451..510 | 100 | -> | Plus |
arm_3R | 19085943..19086147 | 511..717 | 99 | | Plus |
BO12520.pep Sequence
Translation from 16 to 733
> BO12520.pep
MGTTTKFVNEFCDIIDSYGGRDKVMKALCYSAKLVAGYHAKRNPELAKRY
ATASSRISGARATLRLIDDIPMIQYALEYGLGENEPDRVMQVLGVTANIV
DLLYYPIEKVCWLAEHKIVDVKNADNWDNVNSIFWVLSVYLNLMRTMRNF
SLNQEKLNRTNNINELDVKTLTKHRLEMVSIVRISLDFVHAVSTLPKGYL
WGGKLSTLQVGAIGTLSAGLGIYQIFAKRRLNKASFLDH
BO12520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-PA | 233 | CG13827-PA | 1..233 | 1..233 | 1202 | 100 | Plus |
CG13827-PB | 234 | CG13827-PB | 24..234 | 23..233 | 1081 | 100 | Plus |
CG33474-PB | 201 | CG33474-PB | 3..201 | 6..233 | 415 | 39 | Plus |
CG33474-PA | 201 | CG33474-PA | 3..201 | 6..233 | 415 | 39 | Plus |