Clone BO12523 Report

Search the DGRC for BO12523

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG10904-RA
Protein status:BO12523.pep: validated full length
Sequenced Size:832

Clone Sequence Records

BO12523.3prime Sequence

822 bp (805 high quality bases) assembled on 2006-05-08

> BO12523.3prime
ATGGTCTAGAAAGCTTGCACTGTTTGTAAGATCATCTTCTTCGCCGACTT
CCAGCATAACTTGCATTATTTTCCGCTTCAGCCTCTTGCGCGAAACTTCA
GAGTTCAGGTTACGGAATTCACTGGCGATTAGTTCGCCAAATGCGTCCCA
TTGATCACGACCACTTAATGGTAAGTGGAAGGGAGAGGGAGCAGCTGGAG
CTTCGACAGTTCGATTTGGATCAACGAATTTGGAAGACGGCGCAGGTTCA
GGAGGCATCGGAGGAATGGGTTCGCTGACCTTCGGAGGCTGACAGATTTC
TGCATCGTTCTCTATGATCATGGATTCCAGACTTTCTATCGAGGATTGGC
TCTGCTTTTCCACATCCTGATCCGGGTAGCACATGTCCAGCTTCGATACC
AATTTCTTGCCCGGAGCACCTTGTTGATAGCCTGGTCGTGGTTCTATAAC
AGATCGTAGGAACATCAACGTCTTGAAGTGCTCCCATCGACAAGCCTTCT
CCGAATCTCGATCTCCTCCAGACTCCTCGAGCCTCCTCTCCAACTTCTTG
AGCTCTGCATTGAATTGATTGCGCAGGTTGTGCACCTTCTTGCCATAGTC
GTGTTTCGTTATTTCAAGCGAAGCGCAGATGGATTCGATGGCTTTAGCCC
TGCAATCCTTGTTTTTATATAGCTCGGAATAGTGGTTCCACAAGCAGTCC
GACGAGCGGTAAAGTTCGATTAGCTTGGCGATCTTCTCCCGCGTCCAGAT
CGTCTGCTTCCTCCTCTGTCTTTTGGTCAGTTGCGTTTCGCCCAGCTCCT
CGGATTTATTTGGCATGTCGAC

BO12523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10904-PA 801 CG10904-RA 1..798 816..19 3990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10904-RB 1070 CG10904-RB 68..865 816..19 3990 100 Minus
CG10904-RA 950 CG10904-RA 68..865 816..19 3990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23969596..23970006 406..816 2055 100 Plus
2R 25286936 2R 23969146..23969534 19..407 1945 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:27:57 has no hits.

BO12523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:12 Download gff for BO12523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10904-PA 1..801 16..816 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:50 Download gff for BO12523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10904-PA 1..801 16..816 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:26:40 Download gff for BO12523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 62..865 19..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:09 Download gff for BO12523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 62..865 19..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:09 Download gff for BO12523.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23969146..23969532 19..405 100 <- Plus
2R 23969596..23970010 406..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:26:40 Download gff for BO12523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19856669..19857055 19..405 100 <- Plus
arm_2R 19857119..19857533 406..822 99   Plus

BO12523.5prime Sequence

791 bp (786 high quality bases) assembled on 2006-05-08

> BO12523.5prime
GAAGTTATCAGTCGACATGCCAAATAAATCCGAGGAGCTGGGCGAAACGC
AACTGACCAAAAGACAGAGGAGGAAGCAGACGATCTGGACGCGGGAGAAG
ATCGCCAAGCTAATCGAACTTTACCGCTCGTCGGACTGCTTGTGGAACCA
CTATTCCGAGCTATATAAAAACAAGGATTGCAGGGCTAAAGCCATCGAAT
CCATCTGCGCTTCGCTTGAAATAACGAAACACGACTATGGCAAGAAGGTG
CACAACCTGCGCAATCAATTCAATGCAGAGCTCAAGAAGTTGGAGAGGAG
GCTCGAGGAGTCTGGAGGAGATCGAGATTCGGAGAAGGCTTGTCGATGGG
AGCACTTCAAGACGTTGATGTTCCTACGATCTGTTATAGAACCACGACCA
GGCTATCAACAAGGTGCTCCGGGCAAGAAATTGGTATCGAAGCTGGACAT
GTGCTACCCGGATCAGGATGTGGAAAAGCAGAGCCAATCCTCGATAGAAA
GTCTGGAATCCATGATCATAGAGAACGATGCAGAAATCTGTCAGCCTCCG
AAGGTCAGCGAACCCATTCCTCCGATGCCTCCTGAACCTGCGCCGTCTTC
CAAATTCGTTGATCCAAATCGAACTGTCGAAGCTCCAGCTGCTCCCTCTC
CCTTCCACTTACCATTAAGTGGTCGTGATCAATGGGACGCATTTGGCGAA
CTAATCGCCAGTGAATTCCGTAACCTGAACTCTGAAGTTTCGCGCAAGAG
GCTGAAGCGGAAAATAATGCAAGTTATGCTGGAAGTCGGCG

BO12523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10904-PA 801 CG10904-RA 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10904-RB 1070 CG10904-RB 68..842 17..791 3875 100 Plus
CG10904-RA 950 CG10904-RA 68..842 17..791 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23969596..23970006 427..17 2055 100 Minus
2R 25286936 2R 23969169..23969534 791..426 1830 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:15:39 has no hits.

BO12523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:13 Download gff for BO12523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10904-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:52 Download gff for BO12523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10904-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:51:57 Download gff for BO12523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 65..842 14..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:56 Download gff for BO12523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 65..842 14..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:56 Download gff for BO12523.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23969169..23969532 428..791 100 <- Minus
2R 23969596..23970009 14..427 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:51:57 Download gff for BO12523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19856692..19857055 428..791 100 <- Minus
arm_2R 19857119..19857532 14..427 99   Minus

BO12523.complete Sequence

832 bp assembled on 2006-10-11

GenBank Submission: FJ632470

> BO12523.complete
GAAGTTATCAGTCGACATGCCAAATAAATCCGAGGAGCTGGGCGAAACGC
AACTGACCAAAAGACAGAGGAGGAAGCAGACGATCTGGACGCGGGAGAAG
ATCGCCAAGCTAATCGAACTTTACCGCTCGTCGGACTGCTTGTGGAACCA
CTATTCCGAGCTATATAAAAACAAGGATTGCAGGGCTAAAGCCATCGAAT
CCATCTGCGCTTCGCTTGAAATAACGAAACACGACTATGGCAAGAAGGTG
CACAACCTGCGCAATCAATTCAATGCAGAGCTCAAGAAGTTGGAGAGGAG
GCTCGAGGAGTCTGGAGGAGATCGAGATTCGGAGAAGGCTTGTCGATGGG
AGCACTTCAAGACGTTGATGTTCCTACGATCTGTTATAGAACCACGACCA
GGCTATCAACAAGGTGCTCCGGGCAAGAAATTGGTATCGAAGCTGGACAT
GTGCTACCCGGATCAGGATGTGGAAAAGCAGAGCCAATCCTCGATAGAAA
GTCTGGAATCCATGATCATAGAGAACGATGCAGAAATCTGTCAGCCTCCG
AAGGTCAGCGAACCCATTCCTCCGATGCCTCCTGAACCTGCGCCGTCTTC
CAAATTCGTTGATCCAAATCGAACTGTCGAAGCTCCAGCTGCTCCCTCTC
CCTTCCACTTACCATTAAGTGGTCGTGATCAATGGGACGCATTTGGCGAA
CTAATCGCCAGTGAATTCCGTAACCTGAACTCTGAAGTTTCGCGCAAGAG
GCTGAAGCGGAAAATAATGCAAGTTATGCTGGAAGTCGGCGAAGAAGATG
ATCTTACAAACAGTGCAAGCTTTCTAGACCAT

BO12523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10904-RB 801 CG10904-PB 1..798 17..814 3990 100 Plus
CG10904-RA 801 CG10904-PA 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10904-RB 1070 CG10904-RB 68..865 17..814 3990 100 Plus
CG10904-RA 950 CG10904-RA 68..865 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23969596..23970006 427..17 2055 100 Minus
2R 25286936 2R 23969146..23969534 814..426 1945 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:30:05 has no hits.

BO12523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:53 Download gff for BO12523.complete
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:05 Download gff for BO12523.complete
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 61..861 14..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:05 Download gff for BO12523.complete
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 68..865 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:53 Download gff for BO12523.complete
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 61..861 14..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:23 Download gff for BO12523.complete
Subject Subject Range Query Range Percent Splice Strand
CG10904-RA 68..865 17..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:23 Download gff for BO12523.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23969143..23969532 428..816 99 <- Minus
2R 23969596..23970006 17..427 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:05 Download gff for BO12523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19856666..19857055 428..816 99 <- Minus
arm_2R 19857119..19857529 17..427 100   Minus

BO12523.pep Sequence

Translation from 16 to 832

> BO12523.pep
MPNKSEELGETQLTKRQRRKQTIWTREKIAKLIELYRSSDCLWNHYSELY
KNKDCRAKAIESICASLEITKHDYGKKVHNLRNQFNAELKKLERRLEESG
GDRDSEKACRWEHFKTLMFLRSVIEPRPGYQQGAPGKKLVSKLDMCYPDQ
DVEKQSQSSIESLESMIIENDAEICQPPKVSEPIPPMPPEPAPSSKFVDP
NRTVEAPAAPSPFHLPLSGRDQWDAFGELIASEFRNLNSEVSRKRLKRKI
MQVMLEVGEEDDLTNSASFLDH

BO12523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10904-PB 266 CG10904-PB 1..266 1..266 1400 100 Plus
CG10904-PA 266 CG10904-PA 1..266 1..266 1400 100 Plus