Clone Sequence Records
BO12523.3prime Sequence
822 bp (805 high quality bases) assembled on 2006-05-08
> BO12523.3prime
ATGGTCTAGAAAGCTTGCACTGTTTGTAAGATCATCTTCTTCGCCGACTT
CCAGCATAACTTGCATTATTTTCCGCTTCAGCCTCTTGCGCGAAACTTCA
GAGTTCAGGTTACGGAATTCACTGGCGATTAGTTCGCCAAATGCGTCCCA
TTGATCACGACCACTTAATGGTAAGTGGAAGGGAGAGGGAGCAGCTGGAG
CTTCGACAGTTCGATTTGGATCAACGAATTTGGAAGACGGCGCAGGTTCA
GGAGGCATCGGAGGAATGGGTTCGCTGACCTTCGGAGGCTGACAGATTTC
TGCATCGTTCTCTATGATCATGGATTCCAGACTTTCTATCGAGGATTGGC
TCTGCTTTTCCACATCCTGATCCGGGTAGCACATGTCCAGCTTCGATACC
AATTTCTTGCCCGGAGCACCTTGTTGATAGCCTGGTCGTGGTTCTATAAC
AGATCGTAGGAACATCAACGTCTTGAAGTGCTCCCATCGACAAGCCTTCT
CCGAATCTCGATCTCCTCCAGACTCCTCGAGCCTCCTCTCCAACTTCTTG
AGCTCTGCATTGAATTGATTGCGCAGGTTGTGCACCTTCTTGCCATAGTC
GTGTTTCGTTATTTCAAGCGAAGCGCAGATGGATTCGATGGCTTTAGCCC
TGCAATCCTTGTTTTTATATAGCTCGGAATAGTGGTTCCACAAGCAGTCC
GACGAGCGGTAAAGTTCGATTAGCTTGGCGATCTTCTCCCGCGTCCAGAT
CGTCTGCTTCCTCCTCTGTCTTTTGGTCAGTTGCGTTTCGCCCAGCTCCT
CGGATTTATTTGGCATGTCGAC
BO12523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10904-PA | 801 | CG10904-RA | 1..798 | 816..19 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10904-RB | 1070 | CG10904-RB | 68..865 | 816..19 | 3990 | 100 | Minus |
CG10904-RA | 950 | CG10904-RA | 68..865 | 816..19 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23969596..23970006 | 406..816 | 2055 | 100 | Plus |
2R | 25286936 | 2R | 23969146..23969534 | 19..407 | 1945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:27:57 has no hits.
BO12523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:12 Download gff for
BO12523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-PA | 1..801 | 16..816 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:50 Download gff for
BO12523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-PA | 1..801 | 16..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:26:40 Download gff for
BO12523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 62..865 | 19..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:09 Download gff for
BO12523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 62..865 | 19..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:09 Download gff for
BO12523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23969146..23969532 | 19..405 | 100 | <- | Plus |
2R | 23969596..23970010 | 406..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:26:40 Download gff for
BO12523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19856669..19857055 | 19..405 | 100 | <- | Plus |
arm_2R | 19857119..19857533 | 406..822 | 99 | | Plus |
BO12523.5prime Sequence
791 bp (786 high quality bases) assembled on 2006-05-08
> BO12523.5prime
GAAGTTATCAGTCGACATGCCAAATAAATCCGAGGAGCTGGGCGAAACGC
AACTGACCAAAAGACAGAGGAGGAAGCAGACGATCTGGACGCGGGAGAAG
ATCGCCAAGCTAATCGAACTTTACCGCTCGTCGGACTGCTTGTGGAACCA
CTATTCCGAGCTATATAAAAACAAGGATTGCAGGGCTAAAGCCATCGAAT
CCATCTGCGCTTCGCTTGAAATAACGAAACACGACTATGGCAAGAAGGTG
CACAACCTGCGCAATCAATTCAATGCAGAGCTCAAGAAGTTGGAGAGGAG
GCTCGAGGAGTCTGGAGGAGATCGAGATTCGGAGAAGGCTTGTCGATGGG
AGCACTTCAAGACGTTGATGTTCCTACGATCTGTTATAGAACCACGACCA
GGCTATCAACAAGGTGCTCCGGGCAAGAAATTGGTATCGAAGCTGGACAT
GTGCTACCCGGATCAGGATGTGGAAAAGCAGAGCCAATCCTCGATAGAAA
GTCTGGAATCCATGATCATAGAGAACGATGCAGAAATCTGTCAGCCTCCG
AAGGTCAGCGAACCCATTCCTCCGATGCCTCCTGAACCTGCGCCGTCTTC
CAAATTCGTTGATCCAAATCGAACTGTCGAAGCTCCAGCTGCTCCCTCTC
CCTTCCACTTACCATTAAGTGGTCGTGATCAATGGGACGCATTTGGCGAA
CTAATCGCCAGTGAATTCCGTAACCTGAACTCTGAAGTTTCGCGCAAGAG
GCTGAAGCGGAAAATAATGCAAGTTATGCTGGAAGTCGGCG
BO12523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10904-PA | 801 | CG10904-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10904-RB | 1070 | CG10904-RB | 68..842 | 17..791 | 3875 | 100 | Plus |
CG10904-RA | 950 | CG10904-RA | 68..842 | 17..791 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23969596..23970006 | 427..17 | 2055 | 100 | Minus |
2R | 25286936 | 2R | 23969169..23969534 | 791..426 | 1830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:15:39 has no hits.
BO12523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:13 Download gff for
BO12523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:52 Download gff for
BO12523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:51:57 Download gff for
BO12523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 65..842 | 14..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:56 Download gff for
BO12523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 65..842 | 14..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:56 Download gff for
BO12523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23969169..23969532 | 428..791 | 100 | <- | Minus |
2R | 23969596..23970009 | 14..427 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:51:57 Download gff for
BO12523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19856692..19857055 | 428..791 | 100 | <- | Minus |
arm_2R | 19857119..19857532 | 14..427 | 99 | | Minus |
BO12523.complete Sequence
832 bp assembled on 2006-10-11
GenBank Submission: FJ632470
> BO12523.complete
GAAGTTATCAGTCGACATGCCAAATAAATCCGAGGAGCTGGGCGAAACGC
AACTGACCAAAAGACAGAGGAGGAAGCAGACGATCTGGACGCGGGAGAAG
ATCGCCAAGCTAATCGAACTTTACCGCTCGTCGGACTGCTTGTGGAACCA
CTATTCCGAGCTATATAAAAACAAGGATTGCAGGGCTAAAGCCATCGAAT
CCATCTGCGCTTCGCTTGAAATAACGAAACACGACTATGGCAAGAAGGTG
CACAACCTGCGCAATCAATTCAATGCAGAGCTCAAGAAGTTGGAGAGGAG
GCTCGAGGAGTCTGGAGGAGATCGAGATTCGGAGAAGGCTTGTCGATGGG
AGCACTTCAAGACGTTGATGTTCCTACGATCTGTTATAGAACCACGACCA
GGCTATCAACAAGGTGCTCCGGGCAAGAAATTGGTATCGAAGCTGGACAT
GTGCTACCCGGATCAGGATGTGGAAAAGCAGAGCCAATCCTCGATAGAAA
GTCTGGAATCCATGATCATAGAGAACGATGCAGAAATCTGTCAGCCTCCG
AAGGTCAGCGAACCCATTCCTCCGATGCCTCCTGAACCTGCGCCGTCTTC
CAAATTCGTTGATCCAAATCGAACTGTCGAAGCTCCAGCTGCTCCCTCTC
CCTTCCACTTACCATTAAGTGGTCGTGATCAATGGGACGCATTTGGCGAA
CTAATCGCCAGTGAATTCCGTAACCTGAACTCTGAAGTTTCGCGCAAGAG
GCTGAAGCGGAAAATAATGCAAGTTATGCTGGAAGTCGGCGAAGAAGATG
ATCTTACAAACAGTGCAAGCTTTCTAGACCAT
BO12523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10904-RB | 801 | CG10904-PB | 1..798 | 17..814 | 3990 | 100 | Plus |
CG10904-RA | 801 | CG10904-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10904-RB | 1070 | CG10904-RB | 68..865 | 17..814 | 3990 | 100 | Plus |
CG10904-RA | 950 | CG10904-RA | 68..865 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23969596..23970006 | 427..17 | 2055 | 100 | Minus |
2R | 25286936 | 2R | 23969146..23969534 | 814..426 | 1945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:30:05 has no hits.
BO12523.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:53 Download gff for
BO12523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:05 Download gff for
BO12523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 61..861 | 14..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:05 Download gff for
BO12523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 68..865 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:53 Download gff for
BO12523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 61..861 | 14..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:23 Download gff for
BO12523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10904-RA | 68..865 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:23 Download gff for
BO12523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23969143..23969532 | 428..816 | 99 | <- | Minus |
2R | 23969596..23970006 | 17..427 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:05 Download gff for
BO12523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19856666..19857055 | 428..816 | 99 | <- | Minus |
arm_2R | 19857119..19857529 | 17..427 | 100 | | Minus |
BO12523.pep Sequence
Translation from 16 to 832
> BO12523.pep
MPNKSEELGETQLTKRQRRKQTIWTREKIAKLIELYRSSDCLWNHYSELY
KNKDCRAKAIESICASLEITKHDYGKKVHNLRNQFNAELKKLERRLEESG
GDRDSEKACRWEHFKTLMFLRSVIEPRPGYQQGAPGKKLVSKLDMCYPDQ
DVEKQSQSSIESLESMIIENDAEICQPPKVSEPIPPMPPEPAPSSKFVDP
NRTVEAPAAPSPFHLPLSGRDQWDAFGELIASEFRNLNSEVSRKRLKRKI
MQVMLEVGEEDDLTNSASFLDH
BO12523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10904-PB | 266 | CG10904-PB | 1..266 | 1..266 | 1400 | 100 | Plus |
CG10904-PA | 266 | CG10904-PA | 1..266 | 1..266 | 1400 | 100 | Plus |