Clone Sequence Records
BO12524.3prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-08
> BO12524.3prime
ATGGTCTAGAAAGCTTGCCCGCTTGCCTCCGACGCGGGGAGCAGCCTTCT
GCGTGACCTTGGCGGCCTTCTGCTTGGGCGCCGACTTCTTAGCGGGAGCG
GGGGCAGCAGCCTTCTTGGCGGCCTTGACGGCACGCTTCTGCTCCTTGGC
CACCTTGATGGCCTGGTCGCGCTGCGCCTTGCGCACCTCGGGCTTCATGT
TACGCTTGGCCAGAATCTCGGCCAGCGAGGCACCGACGATGGCGCGCTGG
AACTTCTGGGTGCGGCGGGTGCGCTTCTTGGAGGCCTCCTCCTCGATTCC
CTTGCGGTGCTTCCGGCGGTACAGCACGGTCCACGTAACCTTGCGGGGAT
TGCGCTTCATCAGGTAGGAGCGCTCGCACTTCTTGTCCAGGAAGGTGAAC
GACTTGCCATCGATCTTGACCATGGTCTTGCCATGACCGGGGTAGATTTT
GTACCCGCTGAATGCGCACAAGCCAATTTTCATGTCGACTGATAACT
BO12524.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9282-PA | 468 | RpL24-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-RC | 829 | CG9282-RC | 72..536 | 483..19 | 2325 | 100 | Minus |
| RpL24-RB | 1226 | CG9282-RB | 33..497 | 483..19 | 2325 | 100 | Minus |
| RpL24-RA | 790 | CG9282-RA | 33..497 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13394416..13394801 | 19..404 | 1930 | 100 | Plus |
| 2L | 23513712 | 2L | 13394865..13394940 | 403..478 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:36:50 has no hits.
BO12524.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:38:14 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:53 Download gff for
BO12524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9282-PA | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:43 Download gff for
BO12524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 26..500 | 15..491 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:47:47 Download gff for
BO12524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 26..500 | 15..491 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:47:47 Download gff for
BO12524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13394412..13394799 | 15..402 | 99 | <- | Plus |
| 2L | 13394865..13394944 | 403..485 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:43 Download gff for
BO12524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13394865..13394944 | 403..485 | 96 | | Plus |
| arm_2L | 13394412..13394799 | 15..402 | 99 | <- | Plus |
BO12524.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-08
> BO12524.5prime
GAAGTTATCAGTCGACATGAAAATTGGCTTGTGCGCATTCAGCGGGTACA
AAATCTACCCCGGTCATGGCAAGACCATGGTCAAGATCGATGGCAAGTCG
TTCACCTTCCTGGACAAGAAGTGCGAGCGCTCCTACCTGATGAAGCGCAA
TCCCCGCAAGGTTACGTGGACCGTGCTGTACCGCCGGAAGCACCGCAAGG
GAATCGAGGAGGAGGCCTCCAAGAAGCGCACCCGCCGCACCCAGAAGTTC
CAGCGCGCCATCGTCGGTGCCTCGCTGGCCGAGATTCTGGCCAAGCGTAA
CATGAAGCCCGAGGTGCGCAAGGCGCAGCGCGACCAGGCCATCAAGGTGG
CCAAGGAGCAGAAGCGTGCCGTCAAGGCCGCCAAGAAGGCTGCTGCCCCC
GCTCCCGCTAAGAAGTCGGCGCCCAAGCAGAAGGCCGCCAAGGTCACGCA
GAAGGCTGCTCCCCGCGTCGGAGGCAAGCGGGCAAGCTTTCTAGACC
BO12524.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9282-PA | 468 | RpL24-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-RC | 829 | CG9282-RC | 72..536 | 17..481 | 2325 | 100 | Plus |
| RpL24-RB | 1226 | CG9282-RB | 33..497 | 17..481 | 2325 | 100 | Plus |
| RpL24-RA | 790 | CG9282-RA | 33..497 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13394416..13394801 | 481..96 | 1930 | 100 | Minus |
| 2L | 23513712 | 2L | 13394865..13394940 | 97..22 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:36:46 has no hits.
BO12524.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:38:15 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:55 Download gff for
BO12524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9282-PA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:19:15 Download gff for
BO12524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 26..500 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:57:11 Download gff for
BO12524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 26..500 | 9..485 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:57:11 Download gff for
BO12524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13394412..13394799 | 98..485 | 99 | <- | Minus |
| 2L | 13394865..13394944 | 15..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:19:15 Download gff for
BO12524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13394412..13394799 | 98..485 | 99 | <- | Minus |
| arm_2L | 13394865..13394944 | 15..97 | 96 | | Minus |
BO12524.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ632471
> BO12524.complete
GAAGTTATCAGTCGACATGAAAATTGGCTTGTGCGCATTCAGCGGGTACA
AAATCTACCCCGGTCATGGCAAGACCATGGTCAAGATCGATGGCAAGTCG
TTCACCTTCCTGGACAAGAAGTGCGAGCGCTCCTACCTGATGAAGCGCAA
TCCCCGCAAGGTTACGTGGACCGTGCTGTACCGCCGGAAGCACCGCAAGG
GAATCGAGGAGGAGGCCTCCAAGAAGCGCACCCGCCGCACCCAGAAGTTC
CAGCGCGCCATCGTCGGTGCCTCGCTGGCCGAGATTCTGGCCAAGCGTAA
CATGAAGCCCGAGGTGCGCAAGGCGCAGCGCGACCAGGCCATCAAGGTGG
CCAAGGAGCAGAAGCGTGCCGTCAAGGCCGCCAAGAAGGCTGCTGCCCCC
GCTCCCGCTAAGAAGTCGGCGCCCAAGCAGAAGGCCGCCAAGGTCACGCA
GAAGGCTGCTCCCCGCGTCGGAGGCAAGCGGGCAAGCTTTCTAGACCAT
BO12524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-RC | 468 | CG9282-PC | 1..465 | 17..481 | 2325 | 100 | Plus |
| RpL24-RB | 468 | CG9282-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
| RpL24-RA | 468 | CG9282-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-RC | 829 | CG9282-RC | 72..536 | 17..481 | 2325 | 100 | Plus |
| RpL24-RB | 1226 | CG9282-RB | 33..497 | 17..481 | 2325 | 100 | Plus |
| RpL24-RA | 790 | CG9282-RA | 33..497 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13394416..13394801 | 481..96 | 1930 | 100 | Minus |
| 2L | 23513712 | 2L | 13394865..13394940 | 97..22 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:28:53 has no hits.
BO12524.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:12 Download gff for
BO12524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:18 Download gff for
BO12524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 49..523 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:17 Download gff for
BO12524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 33..497 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:12 Download gff for
BO12524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 49..523 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:37 Download gff for
BO12524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-RA | 33..497 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:37 Download gff for
BO12524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13394414..13394799 | 98..483 | 99 | <- | Minus |
| 2L | 13394865..13394942 | 17..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:17 Download gff for
BO12524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13394414..13394799 | 98..483 | 99 | <- | Minus |
| arm_2L | 13394865..13394942 | 17..97 | 96 | | Minus |
BO12524.pep Sequence
Translation from 16 to 499
> BO12524.pep
MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVT
WTVLYRRKHRKGIEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEV
RKAQRDQAIKVAKEQKRAVKAAKKAAAPAPAKKSAPKQKAAKVTQKAAPR
VGGKRASFLDH
BO12524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-PC | 155 | CG9282-PC | 1..155 | 1..155 | 785 | 100 | Plus |
| RpL24-PB | 155 | CG9282-PB | 1..155 | 1..155 | 785 | 100 | Plus |
| RpL24-PA | 155 | CG9282-PA | 1..155 | 1..155 | 785 | 100 | Plus |
| RpL24-like-PA | 191 | CG6764-PA | 1..151 | 1..142 | 172 | 30.5 | Plus |
