Clone Sequence Records
BO12526.3prime Sequence
677 bp (676 high quality bases) assembled on 2006-05-08
> BO12526.3prime
ATGGTCTAGAAAGCTTGCGTTTTTCGCTCGTAGTGGCATTTTAAAATTGG
CTGCTGCCTGCAGCTGAATTTGATAAGCTAAGCTGTGTATTTTAAATCCA
TATAGCCTTGGAACAAACTGATTAGTAGGACGCTTGGGACGATATTCGGG
ATGCACCATGAAGAGCATGTGTGGAAATCCAGTGCCGAAATAGGCGCCAT
CGGTATGGTGGTGACGCGACGATTTTGGTGTGTACACGTCAATGCACTTG
GGGCAATAGGTCTTAACCATTGCCTCGCCGGGGATGTCCGACAGACCCAA
TGGCAGCATGGGCTGACTTTCACAGTAGACACGTGGACAATGTCCGAAAT
CGCCAGTTTGATATTTCTCGATCATTTGAGCGATGCCGCGATTTGTTAGT
ATATATCTGGCGTGTATGAGGCCGTAGAGCATCTCGGCGGCCTGCTCGGT
CATGTCGGACTGCAGTGGATTGTCCTCGAGCTCGTCCTCCGGTTCCAAGT
CCAAGATCATGTCCAACGCTTGCCGATAGTTGGGTACCTGCTCATTTAAA
CCAGTTAAATTGAATTTATCCTGTATGTAGTCCTCATCCACCTCGCAGAA
GAACTCATTGCCACGAAGTCCACAGAACCAGGTGACCCAGGAGACTTCCT
CGGAGCTGCTCATGTCGACTGATAACT
BO12526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15224-PB | 648 | CkIIbeta-RB | 1..645 | 663..19 | 3225 | 100 | Minus |
CG15224-PA | 681 | CkIIbeta-RA | 34..678 | 663..19 | 3225 | 100 | Minus |
CG15224-PF | 648 | CkIIbeta-RF | 1..645 | 663..19 | 3225 | 100 | Minus |
CG15224-PC | 648 | CkIIbeta-RC | 1..645 | 663..19 | 3225 | 100 | Minus |
CG15224-PD | 648 | CkIIbeta-RD | 1..645 | 663..19 | 3225 | 100 | Minus |
CG15224-PE | 708 | CkIIbeta-RE | 1..639 | 663..25 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-RH | 2376 | CG15224-RH | 37..681 | 663..19 | 3225 | 100 | Minus |
CkIIbeta-RG | 997 | CG15224-RG | 72..716 | 663..19 | 3225 | 100 | Minus |
CkIIbeta-RD | 966 | CG15224-RD | 41..685 | 663..19 | 3225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11793973..11794167 | 489..295 | 975 | 100 | Minus |
X | 23542271 | X | 11794818..11795009 | 297..106 | 960 | 100 | Minus |
X | 23542271 | X | 11793796..11793900 | 593..489 | 525 | 100 | Minus |
X | 23542271 | X | 11795103..11795186 | 108..25 | 420 | 100 | Minus |
X | 23542271 | X | 11793447..11793521 | 663..589 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:49:34 has no hits.
BO12526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:18 Download gff for
BO12526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15224-PB | 1..648 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:59 Download gff for
BO12526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15224-PD | 1..648 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:48:46 Download gff for
BO12526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 36..688 | 15..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:36:25 Download gff for
BO12526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 36..688 | 15..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:36:25 Download gff for
BO12526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11794819..11795008 | 107..296 | 100 | -> | Minus |
X | 11795105..11795191 | 20..106 | 97 | | Minus |
X | 11793436..11793518 | 592..675 | 94 | -> | Minus |
X | 11793798..11793900 | 489..591 | 100 | -> | Minus |
X | 11793974..11794165 | 297..488 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:48:46 Download gff for
BO12526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11687469..11687551 | 592..675 | 94 | -> | Minus |
arm_X | 11687831..11687933 | 489..591 | 100 | -> | Minus |
arm_X | 11688007..11688198 | 297..488 | 100 | -> | Minus |
arm_X | 11688852..11689041 | 107..296 | 100 | -> | Minus |
arm_X | 11689138..11689224 | 20..106 | 97 | | Minus |
BO12526.5prime Sequence
677 bp (676 high quality bases) assembled on 2006-05-08
> BO12526.5prime
GAAGTTATCAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCT
GGTTCTGTGGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGAC
TACATACAGGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAA
CTATCGGCAAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGC
TCGAGGACAATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATG
CTCTACGGCCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGC
TCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTG
TCTACTGTGAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCC
GGCGAGGCAATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACAC
ACCAAAATCGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTG
GATTTCCACACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGT
CCTACTAATCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTT
AGCTTATCAAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTAC
GAGCGAAAAACGCAAGCTTTCTAGACC
BO12526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15224-PB | 648 | CkIIbeta-RB | 1..645 | 17..661 | 3225 | 100 | Plus |
CG15224-PA | 681 | CkIIbeta-RA | 34..678 | 17..661 | 3225 | 100 | Plus |
CG15224-PF | 648 | CkIIbeta-RF | 1..645 | 17..661 | 3225 | 100 | Plus |
CG15224-PC | 648 | CkIIbeta-RC | 1..645 | 17..661 | 3225 | 100 | Plus |
CG15224-PD | 648 | CkIIbeta-RD | 1..645 | 17..661 | 3225 | 100 | Plus |
CG15224-PE | 708 | CkIIbeta-RE | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-RH | 2376 | CG15224-RH | 37..681 | 17..661 | 3225 | 100 | Plus |
CkIIbeta-RG | 997 | CG15224-RG | 72..716 | 17..661 | 3225 | 100 | Plus |
CkIIbeta-RD | 966 | CG15224-RD | 41..685 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11793973..11794167 | 191..385 | 975 | 100 | Plus |
X | 23542271 | X | 11794818..11795009 | 383..574 | 960 | 100 | Plus |
X | 23542271 | X | 11793796..11793900 | 87..191 | 525 | 100 | Plus |
X | 23542271 | X | 11795103..11795186 | 572..655 | 420 | 100 | Plus |
X | 23542271 | X | 11793447..11793521 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:27:47 has no hits.
BO12526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:19 Download gff for
BO12526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15224-PB | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:01 Download gff for
BO12526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15224-PD | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:38 Download gff for
BO12526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 36..688 | 12..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:43 Download gff for
BO12526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 36..688 | 12..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:43 Download gff for
BO12526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11793436..11793518 | 5..88 | 94 | -> | Plus |
X | 11793798..11793900 | 89..191 | 100 | -> | Plus |
X | 11793974..11794165 | 192..383 | 100 | -> | Plus |
X | 11794819..11795008 | 384..573 | 100 | -> | Plus |
X | 11795105..11795191 | 574..660 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:38 Download gff for
BO12526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11687469..11687551 | 5..88 | 94 | -> | Plus |
arm_X | 11687831..11687933 | 89..191 | 100 | -> | Plus |
arm_X | 11688007..11688198 | 192..383 | 100 | -> | Plus |
arm_X | 11688852..11689041 | 384..573 | 100 | -> | Plus |
arm_X | 11689138..11689224 | 574..660 | 97 | | Plus |
BO12526.complete Sequence
679 bp assembled on 2006-10-11
GenBank Submission: FJ632472
> BO12526.complete
GAAGTTATCAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCT
GGTTCTGTGGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGAC
TACATACAGGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAA
CTATCGGCAAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGC
TCGAGGACAATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATG
CTCTACGGCCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGC
TCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTG
TCTACTGTGAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCC
GGCGAGGCAATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACAC
ACCAAAATCGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTG
GATTTCCACACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGT
CCTACTAATCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTT
AGCTTATCAAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTAC
GAGCGAAAAACGCAAGCTTTCTAGACCAT
BO12526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-RH | 648 | CG15224-PH | 1..645 | 17..661 | 3225 | 100 | Plus |
CkIIbeta-RG | 648 | CG15224-PG | 1..645 | 17..661 | 3225 | 100 | Plus |
CkIIbeta-RD | 648 | CG15224-PD | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-RH | 2376 | CG15224-RH | 37..681 | 17..661 | 3225 | 100 | Plus |
CkIIbeta-RG | 997 | CG15224-RG | 72..716 | 17..661 | 3225 | 100 | Plus |
CkIIbeta-RD | 966 | CG15224-RD | 41..685 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11793973..11794167 | 191..385 | 975 | 100 | Plus |
X | 23542271 | X | 11794818..11795009 | 383..574 | 960 | 100 | Plus |
X | 23542271 | X | 11793796..11793900 | 87..191 | 525 | 100 | Plus |
X | 23542271 | X | 11795103..11795186 | 572..655 | 420 | 100 | Plus |
X | 23542271 | X | 11793447..11793521 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:42:55 has no hits.
BO12526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:07 Download gff for
BO12526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RC | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:56 Download gff for
BO12526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RC | 395..1051 | 5..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:58 Download gff for
BO12526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 41..685 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:08 Download gff for
BO12526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RC | 395..1051 | 5..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:09 Download gff for
BO12526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta-RD | 41..685 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:09 Download gff for
BO12526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11793447..11793518 | 17..88 | 100 | -> | Plus |
X | 11793798..11793900 | 89..191 | 100 | -> | Plus |
X | 11793974..11794165 | 192..383 | 100 | -> | Plus |
X | 11794819..11795008 | 384..573 | 100 | -> | Plus |
X | 11795105..11795191 | 574..660 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:58 Download gff for
BO12526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11687480..11687551 | 17..88 | 100 | -> | Plus |
arm_X | 11687831..11687933 | 89..191 | 100 | -> | Plus |
arm_X | 11688007..11688198 | 192..383 | 100 | -> | Plus |
arm_X | 11688852..11689041 | 384..573 | 100 | -> | Plus |
arm_X | 11689138..11689224 | 574..660 | 97 | | Plus |
BO12526.pep Sequence
Translation from 16 to 679
> BO12526.pep
MSSSEEVSWVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQAL
DMILDLEPEDELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEK
YQTGDFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPKCIDVYTPKSSR
HHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIHSLAYQIQ
LQAAANFKMPLRAKNASFLDH
BO12526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta-PH | 215 | CG15224-PH | 1..215 | 1..215 | 1174 | 100 | Plus |
CkIIbeta-PG | 215 | CG15224-PG | 1..215 | 1..215 | 1174 | 100 | Plus |
CkIIbeta-PD | 215 | CG15224-PD | 1..215 | 1..215 | 1174 | 100 | Plus |
CkIIbeta-PC | 215 | CG15224-PC | 1..215 | 1..215 | 1174 | 100 | Plus |
CkIIbeta-PF | 215 | CG15224-PF | 1..215 | 1..215 | 1174 | 100 | Plus |