Clone BO12526 Report

Search the DGRC for BO12526

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCkIIbeta-RB
Protein status:BO12526.pep: validated full length
Sequenced Size:679

Clone Sequence Records

BO12526.3prime Sequence

677 bp (676 high quality bases) assembled on 2006-05-08

> BO12526.3prime
ATGGTCTAGAAAGCTTGCGTTTTTCGCTCGTAGTGGCATTTTAAAATTGG
CTGCTGCCTGCAGCTGAATTTGATAAGCTAAGCTGTGTATTTTAAATCCA
TATAGCCTTGGAACAAACTGATTAGTAGGACGCTTGGGACGATATTCGGG
ATGCACCATGAAGAGCATGTGTGGAAATCCAGTGCCGAAATAGGCGCCAT
CGGTATGGTGGTGACGCGACGATTTTGGTGTGTACACGTCAATGCACTTG
GGGCAATAGGTCTTAACCATTGCCTCGCCGGGGATGTCCGACAGACCCAA
TGGCAGCATGGGCTGACTTTCACAGTAGACACGTGGACAATGTCCGAAAT
CGCCAGTTTGATATTTCTCGATCATTTGAGCGATGCCGCGATTTGTTAGT
ATATATCTGGCGTGTATGAGGCCGTAGAGCATCTCGGCGGCCTGCTCGGT
CATGTCGGACTGCAGTGGATTGTCCTCGAGCTCGTCCTCCGGTTCCAAGT
CCAAGATCATGTCCAACGCTTGCCGATAGTTGGGTACCTGCTCATTTAAA
CCAGTTAAATTGAATTTATCCTGTATGTAGTCCTCATCCACCTCGCAGAA
GAACTCATTGCCACGAAGTCCACAGAACCAGGTGACCCAGGAGACTTCCT
CGGAGCTGCTCATGTCGACTGATAACT

BO12526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15224-PB 648 CkIIbeta-RB 1..645 663..19 3225 100 Minus
CG15224-PA 681 CkIIbeta-RA 34..678 663..19 3225 100 Minus
CG15224-PF 648 CkIIbeta-RF 1..645 663..19 3225 100 Minus
CG15224-PC 648 CkIIbeta-RC 1..645 663..19 3225 100 Minus
CG15224-PD 648 CkIIbeta-RD 1..645 663..19 3225 100 Minus
CG15224-PE 708 CkIIbeta-RE 1..639 663..25 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-RH 2376 CG15224-RH 37..681 663..19 3225 100 Minus
CkIIbeta-RG 997 CG15224-RG 72..716 663..19 3225 100 Minus
CkIIbeta-RD 966 CG15224-RD 41..685 663..19 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11793973..11794167 489..295 975 100 Minus
X 23542271 X 11794818..11795009 297..106 960 100 Minus
X 23542271 X 11793796..11793900 593..489 525 100 Minus
X 23542271 X 11795103..11795186 108..25 420 100 Minus
X 23542271 X 11793447..11793521 663..589 375 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:49:34 has no hits.

BO12526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:18 Download gff for BO12526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15224-PB 1..648 15..663 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:59 Download gff for BO12526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15224-PD 1..648 15..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:48:46 Download gff for BO12526.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 36..688 15..668 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:36:25 Download gff for BO12526.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 36..688 15..668 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:36:25 Download gff for BO12526.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11794819..11795008 107..296 100 -> Minus
X 11795105..11795191 20..106 97   Minus
X 11793436..11793518 592..675 94 -> Minus
X 11793798..11793900 489..591 100 -> Minus
X 11793974..11794165 297..488 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:48:46 Download gff for BO12526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11687469..11687551 592..675 94 -> Minus
arm_X 11687831..11687933 489..591 100 -> Minus
arm_X 11688007..11688198 297..488 100 -> Minus
arm_X 11688852..11689041 107..296 100 -> Minus
arm_X 11689138..11689224 20..106 97   Minus

BO12526.5prime Sequence

677 bp (676 high quality bases) assembled on 2006-05-08

> BO12526.5prime
GAAGTTATCAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCT
GGTTCTGTGGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGAC
TACATACAGGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAA
CTATCGGCAAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGC
TCGAGGACAATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATG
CTCTACGGCCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGC
TCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTG
TCTACTGTGAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCC
GGCGAGGCAATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACAC
ACCAAAATCGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTG
GATTTCCACACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGT
CCTACTAATCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTT
AGCTTATCAAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTAC
GAGCGAAAAACGCAAGCTTTCTAGACC

BO12526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15224-PB 648 CkIIbeta-RB 1..645 17..661 3225 100 Plus
CG15224-PA 681 CkIIbeta-RA 34..678 17..661 3225 100 Plus
CG15224-PF 648 CkIIbeta-RF 1..645 17..661 3225 100 Plus
CG15224-PC 648 CkIIbeta-RC 1..645 17..661 3225 100 Plus
CG15224-PD 648 CkIIbeta-RD 1..645 17..661 3225 100 Plus
CG15224-PE 708 CkIIbeta-RE 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-RH 2376 CG15224-RH 37..681 17..661 3225 100 Plus
CkIIbeta-RG 997 CG15224-RG 72..716 17..661 3225 100 Plus
CkIIbeta-RD 966 CG15224-RD 41..685 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11793973..11794167 191..385 975 100 Plus
X 23542271 X 11794818..11795009 383..574 960 100 Plus
X 23542271 X 11793796..11793900 87..191 525 100 Plus
X 23542271 X 11795103..11795186 572..655 420 100 Plus
X 23542271 X 11793447..11793521 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:27:47 has no hits.

BO12526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:19 Download gff for BO12526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15224-PB 1..648 17..665 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:01 Download gff for BO12526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15224-PD 1..648 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:38 Download gff for BO12526.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 36..688 12..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:43 Download gff for BO12526.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 36..688 12..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:43 Download gff for BO12526.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11793436..11793518 5..88 94 -> Plus
X 11793798..11793900 89..191 100 -> Plus
X 11793974..11794165 192..383 100 -> Plus
X 11794819..11795008 384..573 100 -> Plus
X 11795105..11795191 574..660 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:38 Download gff for BO12526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11687469..11687551 5..88 94 -> Plus
arm_X 11687831..11687933 89..191 100 -> Plus
arm_X 11688007..11688198 192..383 100 -> Plus
arm_X 11688852..11689041 384..573 100 -> Plus
arm_X 11689138..11689224 574..660 97   Plus

BO12526.complete Sequence

679 bp assembled on 2006-10-11

GenBank Submission: FJ632472

> BO12526.complete
GAAGTTATCAGTCGACATGAGCAGCTCCGAGGAAGTCTCCTGGGTCACCT
GGTTCTGTGGACTTCGTGGCAATGAGTTCTTCTGCGAGGTGGATGAGGAC
TACATACAGGATAAATTCAATTTAACTGGTTTAAATGAGCAGGTACCCAA
CTATCGGCAAGCGTTGGACATGATCTTGGACTTGGAACCGGAGGACGAGC
TCGAGGACAATCCACTGCAGTCCGACATGACCGAGCAGGCCGCCGAGATG
CTCTACGGCCTCATACACGCCAGATATATACTAACAAATCGCGGCATCGC
TCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTG
TCTACTGTGAAAGTCAGCCCATGCTGCCATTGGGTCTGTCGGACATCCCC
GGCGAGGCAATGGTTAAGACCTATTGCCCCAAGTGCATTGACGTGTACAC
ACCAAAATCGTCGCGTCACCACCATACCGATGGCGCCTATTTCGGCACTG
GATTTCCACACATGCTCTTCATGGTGCATCCCGAATATCGTCCCAAGCGT
CCTACTAATCAGTTTGTTCCAAGGCTATATGGATTTAAAATACACAGCTT
AGCTTATCAAATTCAGCTGCAGGCAGCAGCCAATTTTAAAATGCCACTAC
GAGCGAAAAACGCAAGCTTTCTAGACCAT

BO12526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-RH 648 CG15224-PH 1..645 17..661 3225 100 Plus
CkIIbeta-RG 648 CG15224-PG 1..645 17..661 3225 100 Plus
CkIIbeta-RD 648 CG15224-PD 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-RH 2376 CG15224-RH 37..681 17..661 3225 100 Plus
CkIIbeta-RG 997 CG15224-RG 72..716 17..661 3225 100 Plus
CkIIbeta-RD 966 CG15224-RD 41..685 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11793973..11794167 191..385 975 100 Plus
X 23542271 X 11794818..11795009 383..574 960 100 Plus
X 23542271 X 11793796..11793900 87..191 525 100 Plus
X 23542271 X 11795103..11795186 572..655 420 100 Plus
X 23542271 X 11793447..11793521 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:42:55 has no hits.

BO12526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:07 Download gff for BO12526.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RC 1..648 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:56 Download gff for BO12526.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RC 395..1051 5..665 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:58 Download gff for BO12526.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 41..685 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:08 Download gff for BO12526.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RC 395..1051 5..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:09 Download gff for BO12526.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta-RD 41..685 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:09 Download gff for BO12526.complete
Subject Subject Range Query Range Percent Splice Strand
X 11793447..11793518 17..88 100 -> Plus
X 11793798..11793900 89..191 100 -> Plus
X 11793974..11794165 192..383 100 -> Plus
X 11794819..11795008 384..573 100 -> Plus
X 11795105..11795191 574..660 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:58 Download gff for BO12526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11687480..11687551 17..88 100 -> Plus
arm_X 11687831..11687933 89..191 100 -> Plus
arm_X 11688007..11688198 192..383 100 -> Plus
arm_X 11688852..11689041 384..573 100 -> Plus
arm_X 11689138..11689224 574..660 97   Plus

BO12526.pep Sequence

Translation from 16 to 679

> BO12526.pep
MSSSEEVSWVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQAL
DMILDLEPEDELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEK
YQTGDFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPKCIDVYTPKSSR
HHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIHSLAYQIQ
LQAAANFKMPLRAKNASFLDH

BO12526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta-PH 215 CG15224-PH 1..215 1..215 1174 100 Plus
CkIIbeta-PG 215 CG15224-PG 1..215 1..215 1174 100 Plus
CkIIbeta-PD 215 CG15224-PD 1..215 1..215 1174 100 Plus
CkIIbeta-PC 215 CG15224-PC 1..215 1..215 1174 100 Plus
CkIIbeta-PF 215 CG15224-PF 1..215 1..215 1174 100 Plus