Clone Sequence Records
BO12528.3prime Sequence
881 bp (829 high quality bases) assembled on 2006-05-08
> BO12528.3prime
ATGGTCTAGAAAGCTTGCCTTTCTCTTGGTCAAGCGCAGCTTCAACGGCT
CCTTGGTCACTAAAACAGGGGCGGCATCGAAACGGAACTCCACCTCCTTG
CGTGGAGATTGAACCAGATCAAAATTGGCCAAAATCTTAGCCACCGCCAC
CTTGGAGTTGACTTTTCCCATGCGAAGAGCTATGCAGTGCCTAGGACCCT
CTCCAAAAGGCATATAAGCTGCCTGATCGTAGTTCATGTTATTTGAATCG
AAGCGATGGGGATCGTAGCCATTGGGATTGGGAAAATAGACGGGATCACG
CTGCATGCCAAAGAGCGAGATCAGAATGGGTGTTCCCTTGGCTATGATGT
GATTAGTTCCAGGTACGGGATAATCTTCGGTGCACTCTCGATTGAGGAAT
GGTAGCCCGGGGTATTTGCGAATGGTTTCCATGATGCAGATGTCCAGAAA
CTTTAAGTCCTGCACCGCCTCGTAGGTGAACCTATCCTTGGGCTTCAGAT
TGTGCTTCATCAGCACAGCATCCACTTCTTCTTGCGCCTCCTTCAGCAGT
TCCGGATACATGGACAGCTCGTAGAGAGTGAAGGCAGACGCCGCAGCTGT
GGATTCCGAGCCCGCCACGTAGAACAGGAATGCCTGGGCGGCAATCTTCT
CGATCGACATAGACTTCAGCTGCTCCTGTGCGGTTTCCATGTCCCACACC
TGGTCGTCGTCCTCGCCAATCTTGCCCGTATTTCGGAGGCGGATCAGCAG
CTGCAGCATGTCCTTTCGCACCACGTTGTGCTCCTCCCGGAACTCGATTG
TGCGCTTCATCATGTCTCGCAGGGATGTCAGATTGCGGCTTTCGTAGCCC
AAGCGGTTCATTAGCTTAGCAATCGGTGGAC
BO12528.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4373-PA | 1539 | Cyp6d2-RA | 674..1536 | 881..19 | 4290 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d2-RA | 1759 | CG4373-RA | 786..1648 | 881..19 | 4300 | 99.9 | Minus |
nsr-RB | 2523 | CG3875-RB | 2148..2523 | 429..804 | 1880 | 100 | Plus |
nsr-RB | 2523 | CG3875-RB | 1843..2092 | 180..429 | 1250 | 100 | Plus |
nsr-RB | 2523 | CG3875-RB | 1612..1774 | 19..181 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22653220..22653665 | 429..874 | 2215 | 99.8 | Plus |
2R | 25286936 | 2R | 22652915..22653164 | 180..429 | 1250 | 100 | Plus |
2R | 25286936 | 2R | 22652684..22652846 | 19..181 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:27:19 has no hits.
BO12528.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:22 Download gff for
BO12528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4373-PA | 674..1539 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:05 Download gff for
BO12528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4373-PA | 674..1539 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:26:38 Download gff for
BO12528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 786..1651 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:59 Download gff for
BO12528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 786..1651 | 15..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:59 Download gff for
BO12528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22652680..22652844 | 15..179 | 98 | <- | Plus |
2R | 22652915..22653163 | 180..428 | 100 | <- | Plus |
2R | 22653220..22653671 | 429..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:26:38 Download gff for
BO12528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18540185..18540349 | 15..179 | 98 | <- | Plus |
arm_2R | 18540420..18540668 | 180..428 | 100 | <- | Plus |
arm_2R | 18540725..18541176 | 429..881 | 99 | | Plus |
BO12528.5prime Sequence
828 bp (783 high quality bases) assembled on 2006-05-08
> BO12528.5prime
GAAGTTATCAGTCGACATGTGGACCATTCTCCTGACGATCCTAATCGCGG
GTCTGCTGTACAGATATGTGAAGCGGCACTACACTCACTGGCAGCGATTG
GGAGTCGATGAGGAGCCGGCAAAGATTCCCTTTGGCGTAATGGATACTGT
CATGAAGCAGGAACGAAGTTTGGGCATGGCTCTGGCTGATATATACGCCC
GGCACGAGGGCAAAATCGTTGGCATATACATGTTGAACAAACGAAGTATC
CTGATCCGAGATGCCCAATTGGCTCGCCAAATCATGACCAGCGATTTCGC
CAGTTTCCACGATCGCGGGGTGTACGTGGACGAGGATAAGGACCCGTTGT
CGGCCAACCTTTTTAACCTAAGAGGTGCTTCATGGCGAAATCTACGTCAG
AAACTTACGCCGTCGTTCTCCTCCGGCAAAATTAAGGGCATGTTCGGCAC
CATCGACGACGTGGGCGATAAGTTGGTGCAGCATTTGGAGGGGGCCCTTG
ACCAAAGCGATGAAGTGGAGATCAAGGATGTGATGACCACGTATGCGGTG
GACATCATTGGGTCAGTCATTTTTGGCTTGGAGATAGACAGCTTCCGAAA
TCCAAAAAACGAGTTCCGCGAGATCAGCAGCTCTACGTCTAGGGATGAAT
CTCTGCTGCTGAAGATTCACAATATGTCCATGTTCATTTGTCCACCGATT
GCTAAGCTAATGAACCGCTTGGGCTACGAAAGCCGCATTCTGACATCCCT
GCGAGACATGATGAAGCGCACAATCGAGTTCCGGGAGGAGCACAACGTGG
TGCGAAAGGACATGCTGCAGCTGCTGAT
BO12528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4373-PA | 1539 | Cyp6d2-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d2-RA | 1759 | CG4373-RA | 113..924 | 17..828 | 4060 | 100 | Plus |
nsr-RB | 2523 | CG3875-RB | 2462..2523 | 828..767 | 310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22653738..22654418 | 697..17 | 3405 | 100 | Minus |
2R | 25286936 | 2R | 22653534..22653665 | 828..697 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:21:28 has no hits.
BO12528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:23 Download gff for
BO12528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4373-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:06 Download gff for
BO12528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4373-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:48:01 Download gff for
BO12528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 106..924 | 8..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:21 Download gff for
BO12528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 106..924 | 8..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:21 Download gff for
BO12528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22653534..22653665 | 697..828 | 100 | <- | Minus |
2R | 22653739..22654425 | 8..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:48:01 Download gff for
BO12528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18541039..18541170 | 697..828 | 100 | <- | Minus |
arm_2R | 18541244..18541930 | 8..696 | 99 | | Minus |
BO12528.complete Sequence
1570 bp assembled on 2007-06-22
GenBank Submission: FJ632473
> BO12528.complete
GAAGTTATCAGTCGACATGTGGACCATTCTCCTGACGATCCTAATCGCGG
GTCTGCTGTACAGATATGTGAAGCGGCACTACACTCACTGGCAGCGATTG
GGAGTCGATGAGGAGCCGGCAAAGATTCCCTTTGGCGTAATGGATACTGT
CATGAAGCAGGAACGAAGTTTGGGCATGGCTCTGGCTGATATATACGCCC
GGCACGAGGGCAAAATCGTTGGCATATACATGTTGAACAAACGAAGTATC
CTGATCCGAGATGCCCAATTGGCTCGCCAAATCATGACCAGCGATTTCGC
CAGTTTCCACGATCGCGGGGTGTACGTGGACGAGGATAAGGACCCGTTGT
CGGCCAACCTTTTTAACCTAAGAGGTGCTTCATGGCGAAATCTACGTCAG
AAACTTACGCCGTCGTTCTCCTCCGGCAAAATTAAGGGCATGTTCGGCAC
CATCGACGACGTGGGCGATAAGTTGGTGCAGCATTTGGAGGGGGCCCTTG
ACCAAAGCGATGAAGTGGAGATCAAGGATGTGATGACCACGTATGCGGTG
GACATCATTGGGTCAGTCATTTTTGGCTTGGAGATAGACAGCTTCCGAAA
TCCAAAAAACGAGTTCCGCGAGATCAGCAGCTCTACGTCTAGGGATGAAT
CTCTGCTGCTGAAGATTCACAATATGTCCATGTTCATTTGTCCACCGATT
GCTAAGCTAATGAACCGCTTGGGCTACGAAAGCCGCATTCTGACATCCCT
GCGAGACATGATGAAGCGCACAATCGAGTTCCGGGAGGAGCACAACGTGG
TGCGAAAGGACATGCTGCAGCTGCTGATCCGCCTCCGAAATACGGGCAAG
ATTGGCGAGGACGACGACCAGGTGTGGGACATGGAAACCGCACAGGAGCA
GCTGAAGTCTATGTCGATCGAGAAGATTGCCGCCCAGGCATTCCTGTTCT
ACGTGGCGGGCTCGGAATCCACAGCTGCGGCGTCTGCCTTCACTCTCTAC
GAGCTGTCCATGTATCCGGAACTGCTGAAGGAGGCGCAAGAAGAAGTGGA
TGCTGTGCTGATGAAGCACAATCTGAAGCCCAAGGATAGGTTCACCTACG
AGGCGGTGCAGGACTTAAAGTTTCTGGACATCTGCATCATGGAAACCATT
CGCAAATACCCCGGGCTACCATTCCTCAATCGAGAGTGCACCGAAGATTA
TCCCGTACCTGGAACTAATCACATCATAGCCAAGGGAACACCCATTCTGA
TCTCGCTCTTTGGCATGCAGCGTGATCCCGTCTATTTTCCCAATCCCAAT
GGCTACGATCCCCATCGCTTCGATTCAAATAACATGAACTACGATCAGGC
AGCTTATATGCCTTTTGGAGAGGGTCCTAGGCACTGCATAGCTCTTCGCA
TGGGAAAAGTCAACTCCAAGGTGGCGGTGGCTAAGATTTTGGCCAATTTT
GATCTGGTTCAATCTCCACGCAAGGAGGTGGAGTTCCGTTTCGATGCCGC
CCCTGTTTTAGTGACCAAGGAGCCGTTGAAGCTGCGCTTGACCAAGAGAA
AGGCAAGCTTTCTAGACCAT
BO12528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d2-RA | 1539 | CG4373-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d2-RA | 1759 | CG4373-RA | 113..1648 | 17..1552 | 7680 | 100 | Plus |
nsr-RB | 2523 | CG3875-RB | 2148..2523 | 1142..767 | 1880 | 100 | Minus |
nsr-RB | 2523 | CG3875-RB | 1843..2092 | 1391..1142 | 1250 | 100 | Minus |
nsr-RB | 2523 | CG3875-RB | 1612..1774 | 1552..1390 | 815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22653738..22654418 | 697..17 | 3405 | 100 | Minus |
2R | 25286936 | 2R | 22653220..22653665 | 1142..697 | 2230 | 100 | Minus |
2R | 25286936 | 2R | 22652915..22653164 | 1391..1142 | 1250 | 100 | Minus |
2R | 25286936 | 2R | 22652684..22652846 | 1552..1390 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:33:17 has no hits.
BO12528.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:19 Download gff for
BO12528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 1..1539 | 17..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:56 Download gff for
BO12528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 103..1648 | 8..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:59 Download gff for
BO12528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 113..1648 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:19 Download gff for
BO12528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 103..1648 | 8..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:41 Download gff for
BO12528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d2-RA | 113..1648 | 17..1554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:41 Download gff for
BO12528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22652915..22653163 | 1143..1391 | 100 | <- | Minus |
2R | 22652682..22652844 | 1392..1554 | 98 | <- | Minus |
2R | 22653220..22653665 | 697..1142 | 100 | <- | Minus |
2R | 22653739..22654418 | 17..696 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:59 Download gff for
BO12528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18540187..18540349 | 1392..1554 | 98 | <- | Minus |
arm_2R | 18540420..18540668 | 1143..1391 | 100 | <- | Minus |
arm_2R | 18540725..18541170 | 697..1142 | 100 | <- | Minus |
arm_2R | 18541244..18541923 | 17..696 | 100 | | Minus |
BO12528.pep Sequence
Translation from 16 to 1570
> BO12528.pep
MWTILLTILIAGLLYRYVKRHYTHWQRLGVDEEPAKIPFGVMDTVMKQER
SLGMALADIYARHEGKIVGIYMLNKRSILIRDAQLARQIMTSDFASFHDR
GVYVDEDKDPLSANLFNLRGASWRNLRQKLTPSFSSGKIKGMFGTIDDVG
DKLVQHLEGALDQSDEVEIKDVMTTYAVDIIGSVIFGLEIDSFRNPKNEF
REISSSTSRDESLLLKIHNMSMFICPPIAKLMNRLGYESRILTSLRDMMK
RTIEFREEHNVVRKDMLQLLIRLRNTGKIGEDDDQVWDMETAQEQLKSMS
IEKIAAQAFLFYVAGSESTAAASAFTLYELSMYPELLKEAQEEVDAVLMK
HNLKPKDRFTYEAVQDLKFLDICIMETIRKYPGLPFLNRECTEDYPVPGT
NHIIAKGTPILISLFGMQRDPVYFPNPNGYDPHRFDSNNMNYDQAAYMPF
GEGPRHCIALRMGKVNSKVAVAKILANFDLVQSPRKEVEFRFDAAPVLVT
KEPLKLRLTKRKASFLDH
BO12528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d2-PA | 512 | CG4373-PA | 1..512 | 1..512 | 2640 | 100 | Plus |
Cyp6d4-PA | 515 | CG12800-PA | 5..510 | 4..511 | 1398 | 50.4 | Plus |
Cyp6d5-PA | 508 | CG3050-PA | 4..508 | 4..512 | 1290 | 49 | Plus |
Cyp6a22-PC | 499 | CG10240-PC | 7..481 | 4..499 | 764 | 33.6 | Plus |
Cyp6a22-PB | 499 | CG10240-PB | 7..481 | 4..499 | 764 | 33.6 | Plus |