Clone BO12528 Report

Search the DGRC for BO12528

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6d2-RA
Protein status:BO12528.pep: validated full length
Sequenced Size:1570

Clone Sequence Records

BO12528.3prime Sequence

881 bp (829 high quality bases) assembled on 2006-05-08

> BO12528.3prime
ATGGTCTAGAAAGCTTGCCTTTCTCTTGGTCAAGCGCAGCTTCAACGGCT
CCTTGGTCACTAAAACAGGGGCGGCATCGAAACGGAACTCCACCTCCTTG
CGTGGAGATTGAACCAGATCAAAATTGGCCAAAATCTTAGCCACCGCCAC
CTTGGAGTTGACTTTTCCCATGCGAAGAGCTATGCAGTGCCTAGGACCCT
CTCCAAAAGGCATATAAGCTGCCTGATCGTAGTTCATGTTATTTGAATCG
AAGCGATGGGGATCGTAGCCATTGGGATTGGGAAAATAGACGGGATCACG
CTGCATGCCAAAGAGCGAGATCAGAATGGGTGTTCCCTTGGCTATGATGT
GATTAGTTCCAGGTACGGGATAATCTTCGGTGCACTCTCGATTGAGGAAT
GGTAGCCCGGGGTATTTGCGAATGGTTTCCATGATGCAGATGTCCAGAAA
CTTTAAGTCCTGCACCGCCTCGTAGGTGAACCTATCCTTGGGCTTCAGAT
TGTGCTTCATCAGCACAGCATCCACTTCTTCTTGCGCCTCCTTCAGCAGT
TCCGGATACATGGACAGCTCGTAGAGAGTGAAGGCAGACGCCGCAGCTGT
GGATTCCGAGCCCGCCACGTAGAACAGGAATGCCTGGGCGGCAATCTTCT
CGATCGACATAGACTTCAGCTGCTCCTGTGCGGTTTCCATGTCCCACACC
TGGTCGTCGTCCTCGCCAATCTTGCCCGTATTTCGGAGGCGGATCAGCAG
CTGCAGCATGTCCTTTCGCACCACGTTGTGCTCCTCCCGGAACTCGATTG
TGCGCTTCATCATGTCTCGCAGGGATGTCAGATTGCGGCTTTCGTAGCCC
AAGCGGTTCATTAGCTTAGCAATCGGTGGAC

BO12528.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4373-PA 1539 Cyp6d2-RA 674..1536 881..19 4290 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d2-RA 1759 CG4373-RA 786..1648 881..19 4300 99.9 Minus
nsr-RB 2523 CG3875-RB 2148..2523 429..804 1880 100 Plus
nsr-RB 2523 CG3875-RB 1843..2092 180..429 1250 100 Plus
nsr-RB 2523 CG3875-RB 1612..1774 19..181 815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22653220..22653665 429..874 2215 99.8 Plus
2R 25286936 2R 22652915..22653164 180..429 1250 100 Plus
2R 25286936 2R 22652684..22652846 19..181 815 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:27:19 has no hits.

BO12528.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:22 Download gff for BO12528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4373-PA 674..1539 15..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:05 Download gff for BO12528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4373-PA 674..1539 15..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:26:38 Download gff for BO12528.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 786..1651 15..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:59 Download gff for BO12528.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 786..1651 15..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:59 Download gff for BO12528.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22652680..22652844 15..179 98 <- Plus
2R 22652915..22653163 180..428 100 <- Plus
2R 22653220..22653671 429..881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:26:38 Download gff for BO12528.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18540185..18540349 15..179 98 <- Plus
arm_2R 18540420..18540668 180..428 100 <- Plus
arm_2R 18540725..18541176 429..881 99   Plus

BO12528.5prime Sequence

828 bp (783 high quality bases) assembled on 2006-05-08

> BO12528.5prime
GAAGTTATCAGTCGACATGTGGACCATTCTCCTGACGATCCTAATCGCGG
GTCTGCTGTACAGATATGTGAAGCGGCACTACACTCACTGGCAGCGATTG
GGAGTCGATGAGGAGCCGGCAAAGATTCCCTTTGGCGTAATGGATACTGT
CATGAAGCAGGAACGAAGTTTGGGCATGGCTCTGGCTGATATATACGCCC
GGCACGAGGGCAAAATCGTTGGCATATACATGTTGAACAAACGAAGTATC
CTGATCCGAGATGCCCAATTGGCTCGCCAAATCATGACCAGCGATTTCGC
CAGTTTCCACGATCGCGGGGTGTACGTGGACGAGGATAAGGACCCGTTGT
CGGCCAACCTTTTTAACCTAAGAGGTGCTTCATGGCGAAATCTACGTCAG
AAACTTACGCCGTCGTTCTCCTCCGGCAAAATTAAGGGCATGTTCGGCAC
CATCGACGACGTGGGCGATAAGTTGGTGCAGCATTTGGAGGGGGCCCTTG
ACCAAAGCGATGAAGTGGAGATCAAGGATGTGATGACCACGTATGCGGTG
GACATCATTGGGTCAGTCATTTTTGGCTTGGAGATAGACAGCTTCCGAAA
TCCAAAAAACGAGTTCCGCGAGATCAGCAGCTCTACGTCTAGGGATGAAT
CTCTGCTGCTGAAGATTCACAATATGTCCATGTTCATTTGTCCACCGATT
GCTAAGCTAATGAACCGCTTGGGCTACGAAAGCCGCATTCTGACATCCCT
GCGAGACATGATGAAGCGCACAATCGAGTTCCGGGAGGAGCACAACGTGG
TGCGAAAGGACATGCTGCAGCTGCTGAT

BO12528.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4373-PA 1539 Cyp6d2-RA 1..812 17..828 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d2-RA 1759 CG4373-RA 113..924 17..828 4060 100 Plus
nsr-RB 2523 CG3875-RB 2462..2523 828..767 310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22653738..22654418 697..17 3405 100 Minus
2R 25286936 2R 22653534..22653665 828..697 660 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:21:28 has no hits.

BO12528.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:23 Download gff for BO12528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4373-PA 1..812 17..828 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:06 Download gff for BO12528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4373-PA 1..812 17..828 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:48:01 Download gff for BO12528.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 106..924 8..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:21 Download gff for BO12528.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 106..924 8..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:21 Download gff for BO12528.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22653534..22653665 697..828 100 <- Minus
2R 22653739..22654425 8..696 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:48:01 Download gff for BO12528.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18541039..18541170 697..828 100 <- Minus
arm_2R 18541244..18541930 8..696 99   Minus

BO12528.complete Sequence

1570 bp assembled on 2007-06-22

GenBank Submission: FJ632473

> BO12528.complete
GAAGTTATCAGTCGACATGTGGACCATTCTCCTGACGATCCTAATCGCGG
GTCTGCTGTACAGATATGTGAAGCGGCACTACACTCACTGGCAGCGATTG
GGAGTCGATGAGGAGCCGGCAAAGATTCCCTTTGGCGTAATGGATACTGT
CATGAAGCAGGAACGAAGTTTGGGCATGGCTCTGGCTGATATATACGCCC
GGCACGAGGGCAAAATCGTTGGCATATACATGTTGAACAAACGAAGTATC
CTGATCCGAGATGCCCAATTGGCTCGCCAAATCATGACCAGCGATTTCGC
CAGTTTCCACGATCGCGGGGTGTACGTGGACGAGGATAAGGACCCGTTGT
CGGCCAACCTTTTTAACCTAAGAGGTGCTTCATGGCGAAATCTACGTCAG
AAACTTACGCCGTCGTTCTCCTCCGGCAAAATTAAGGGCATGTTCGGCAC
CATCGACGACGTGGGCGATAAGTTGGTGCAGCATTTGGAGGGGGCCCTTG
ACCAAAGCGATGAAGTGGAGATCAAGGATGTGATGACCACGTATGCGGTG
GACATCATTGGGTCAGTCATTTTTGGCTTGGAGATAGACAGCTTCCGAAA
TCCAAAAAACGAGTTCCGCGAGATCAGCAGCTCTACGTCTAGGGATGAAT
CTCTGCTGCTGAAGATTCACAATATGTCCATGTTCATTTGTCCACCGATT
GCTAAGCTAATGAACCGCTTGGGCTACGAAAGCCGCATTCTGACATCCCT
GCGAGACATGATGAAGCGCACAATCGAGTTCCGGGAGGAGCACAACGTGG
TGCGAAAGGACATGCTGCAGCTGCTGATCCGCCTCCGAAATACGGGCAAG
ATTGGCGAGGACGACGACCAGGTGTGGGACATGGAAACCGCACAGGAGCA
GCTGAAGTCTATGTCGATCGAGAAGATTGCCGCCCAGGCATTCCTGTTCT
ACGTGGCGGGCTCGGAATCCACAGCTGCGGCGTCTGCCTTCACTCTCTAC
GAGCTGTCCATGTATCCGGAACTGCTGAAGGAGGCGCAAGAAGAAGTGGA
TGCTGTGCTGATGAAGCACAATCTGAAGCCCAAGGATAGGTTCACCTACG
AGGCGGTGCAGGACTTAAAGTTTCTGGACATCTGCATCATGGAAACCATT
CGCAAATACCCCGGGCTACCATTCCTCAATCGAGAGTGCACCGAAGATTA
TCCCGTACCTGGAACTAATCACATCATAGCCAAGGGAACACCCATTCTGA
TCTCGCTCTTTGGCATGCAGCGTGATCCCGTCTATTTTCCCAATCCCAAT
GGCTACGATCCCCATCGCTTCGATTCAAATAACATGAACTACGATCAGGC
AGCTTATATGCCTTTTGGAGAGGGTCCTAGGCACTGCATAGCTCTTCGCA
TGGGAAAAGTCAACTCCAAGGTGGCGGTGGCTAAGATTTTGGCCAATTTT
GATCTGGTTCAATCTCCACGCAAGGAGGTGGAGTTCCGTTTCGATGCCGC
CCCTGTTTTAGTGACCAAGGAGCCGTTGAAGCTGCGCTTGACCAAGAGAA
AGGCAAGCTTTCTAGACCAT

BO12528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d2-RA 1539 CG4373-PA 1..1536 17..1552 7680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d2-RA 1759 CG4373-RA 113..1648 17..1552 7680 100 Plus
nsr-RB 2523 CG3875-RB 2148..2523 1142..767 1880 100 Minus
nsr-RB 2523 CG3875-RB 1843..2092 1391..1142 1250 100 Minus
nsr-RB 2523 CG3875-RB 1612..1774 1552..1390 815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22653738..22654418 697..17 3405 100 Minus
2R 25286936 2R 22653220..22653665 1142..697 2230 100 Minus
2R 25286936 2R 22652915..22653164 1391..1142 1250 100 Minus
2R 25286936 2R 22652684..22652846 1552..1390 815 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:33:17 has no hits.

BO12528.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:19 Download gff for BO12528.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 1..1539 17..1556 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:56 Download gff for BO12528.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 103..1648 8..1556 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:59 Download gff for BO12528.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 113..1648 17..1554 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:19 Download gff for BO12528.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 103..1648 8..1556 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:41 Download gff for BO12528.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d2-RA 113..1648 17..1554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:41 Download gff for BO12528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22652915..22653163 1143..1391 100 <- Minus
2R 22652682..22652844 1392..1554 98 <- Minus
2R 22653220..22653665 697..1142 100 <- Minus
2R 22653739..22654418 17..696 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:59 Download gff for BO12528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18540187..18540349 1392..1554 98 <- Minus
arm_2R 18540420..18540668 1143..1391 100 <- Minus
arm_2R 18540725..18541170 697..1142 100 <- Minus
arm_2R 18541244..18541923 17..696 100   Minus

BO12528.pep Sequence

Translation from 16 to 1570

> BO12528.pep
MWTILLTILIAGLLYRYVKRHYTHWQRLGVDEEPAKIPFGVMDTVMKQER
SLGMALADIYARHEGKIVGIYMLNKRSILIRDAQLARQIMTSDFASFHDR
GVYVDEDKDPLSANLFNLRGASWRNLRQKLTPSFSSGKIKGMFGTIDDVG
DKLVQHLEGALDQSDEVEIKDVMTTYAVDIIGSVIFGLEIDSFRNPKNEF
REISSSTSRDESLLLKIHNMSMFICPPIAKLMNRLGYESRILTSLRDMMK
RTIEFREEHNVVRKDMLQLLIRLRNTGKIGEDDDQVWDMETAQEQLKSMS
IEKIAAQAFLFYVAGSESTAAASAFTLYELSMYPELLKEAQEEVDAVLMK
HNLKPKDRFTYEAVQDLKFLDICIMETIRKYPGLPFLNRECTEDYPVPGT
NHIIAKGTPILISLFGMQRDPVYFPNPNGYDPHRFDSNNMNYDQAAYMPF
GEGPRHCIALRMGKVNSKVAVAKILANFDLVQSPRKEVEFRFDAAPVLVT
KEPLKLRLTKRKASFLDH

BO12528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d2-PA 512 CG4373-PA 1..512 1..512 2640 100 Plus
Cyp6d4-PA 515 CG12800-PA 5..510 4..511 1398 50.4 Plus
Cyp6d5-PA 508 CG3050-PA 4..508 4..512 1290 49 Plus
Cyp6a22-PC 499 CG10240-PC 7..481 4..499 764 33.6 Plus
Cyp6a22-PB 499 CG10240-PB 7..481 4..499 764 33.6 Plus