Clone Sequence Records
BO12529.3prime Sequence
785 bp (784 high quality bases) assembled on 2006-05-08
> BO12529.3prime
ATGGTCTAGAAAGCTTGCCGTTTCCTCATTGCCATCGCAGGCGGTGTTTC
TAAGCAGACGGCTGAGCCGCTTGCCAATGGGCTTGGGGTACTGGTTGTTC
TTCAATAGAAACTCCTTGGACTGGTGCTCCACGGCTCCGTTGTCTAGTTG
GTACTTGCACAGCGTGTGCAGCGGTCGCACGAGCGTTTGCCTCAGCTCTG
GCCGAGATTCCAGCACTGCCAGGCATTGCGCAGCGGTCTCTAGTGTGCTA
AGGCATCCTTCAGTAGGCTGTGTACGGATGATGTAGTCACTTATACCCAC
GGCGATGAGTTTCACCTGTCGCAGGCGGTGTAGAGCCGGACTGCTAGCGT
AAATGGCTTTAGCCTGAGGCCAGGTACCATCGATGAGCACCAGTGTATAA
GGACCCGCACTGTGGTCCACCTCTTCCAGTGGGACCGAGTCCCGACTGGG
ATACAGAAGCAGTGTTTGTGGAGAGTCCAAAATCCTCTGCAGATCAGCAT
GGTTTCTATGGTTTGGAAACCGCTTGCCTTTGTAGACGACACATTTTCCC
GGTTCCAAACCCAACTGCAGCATCAGTGCAGTGCGTAGCGATCTCTTCTC
CTCTGCAGGGTGTTGCAGTATAACAATCTGTGAGGACACCGCCTCAGGTG
GATGCGGTAAAGCCGGGCACCAGCAAACAACCACGGGTCGTTTGCATTTC
TCGCACTTGTTGCGTCTGTTGGGCGGATCGGCGCTGATGCCCACGAGGTC
CAGCCACGCGTCATCCTCCATGTCGACTGATAACT
BO12529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-PA | 756 | CG10050-RA | 1..753 | 771..19 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-RA | 1894 | CG10050-RA | 84..836 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7250020..7250692 | 691..19 | 3365 | 100 | Minus |
| 3R | 32079331 | 3R | 7249878..7249957 | 771..692 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:36:40 has no hits.
BO12529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:24 Download gff for
BO12529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-PA | 1..756 | 16..771 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:08 Download gff for
BO12529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-PA | 1..756 | 16..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:41 Download gff for
BO12529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 81..843 | 13..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:47:45 Download gff for
BO12529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 81..843 | 13..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:47:45 Download gff for
BO12529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7249875..7249957 | 692..778 | 95 | -> | Minus |
| 3R | 7250020..7250699 | 13..691 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:41 Download gff for
BO12529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3075597..3075679 | 692..778 | 95 | -> | Minus |
| arm_3R | 3075742..3076421 | 13..691 | 99 | | Minus |
BO12529.5prime Sequence
785 bp (761 high quality bases) assembled on 2006-05-08
> BO12529.5prime
GAAGTTATCAGTCGACATGGAGGATGACGCGTGGCTGGACCTCGTGGGCA
TCAGCGCCGATCCGCCCAACAGACGCAACAAGTGCGAGAAATGCAAACGA
CCCGTGGTTGTTTGCTGGTGCCCGGCTTTACCGCATCCACCTGAGGCGGT
GTCCTCACAGATTGTTATACTGCAACACCCTGCAGAGGAGAAGAGATCGC
TACGCACTGCACTGATGCTGCAGTTGGGTTTGGAACCGGGAAAATGTGTC
GTCTACAAAGGCAAGCGGTTTCCAAACCATAGAAACCATGCTGATCTGCA
GAGGATTTTGGACTCTCCACAAACACTGCTTCTGTATCCCAGTCGGGACT
CGGTCCCACTGGAAGAGGTGGACCACAGTGCGGGTCCTTATACACTGGTG
CTCATCGATGGTACCTGGCCTCAGGCTAAAGCCATTTACGCTAGCAGTCC
GGCTCTACACCGCCTGCGACAGGTGAAACTCATCGCCGTGGGTATAAGTG
ACTACATCATCCGTACACAGCCTACTGAAGGATGCCTTAGCACACTAGAG
ACCGCTGCGCAATGCCTGGCAGTGCTGGAATCTCGGCCAGAGCTGAGGCA
AACGCTCGTGCGACCGCTGCACACGCTGTGCAAGTACCAACTAGACAACG
GAGCCGTGGAGCACCAGTCCAAGGAGTTTCTATTGAAGAACAACCAGTAC
CCCAAGCCCATTGGCAAGCGGCTCAGCCGTCTGCTTAGAAACACCGCCTG
CGATGGCAATGAGGAAACGGCAAGCTTTCTAGACC
BO12529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-PA | 756 | CG10050-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-RA | 1894 | CG10050-RA | 84..836 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7250020..7250692 | 97..769 | 3365 | 100 | Plus |
| 3R | 32079331 | 3R | 7249878..7249957 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:20:58 has no hits.
BO12529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:25 Download gff for
BO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-PA | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:09 Download gff for
BO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-PA | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:47:56 Download gff for
BO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 81..843 | 10..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:34 Download gff for
BO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 81..843 | 10..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:34 Download gff for
BO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7249875..7249957 | 10..96 | 95 | -> | Plus |
| 3R | 7250020..7250699 | 97..775 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:47:56 Download gff for
BO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3075597..3075679 | 10..96 | 95 | -> | Plus |
| arm_3R | 3075742..3076421 | 97..775 | 99 | | Plus |
BO12529.complete Sequence
787 bp assembled on 2006-10-11
GenBank Submission: FJ632474
> BO12529.complete
GAAGTTATCAGTCGACATGGAGGATGACGCGTGGCTGGACCTCGTGGGCA
TCAGCGCCGATCCGCCCAACAGACGCAACAAGTGCGAGAAATGCAAACGA
CCCGTGGTTGTTTGCTGGTGCCCGGCTTTACCGCATCCACCTGAGGCGGT
GTCCTCACAGATTGTTATACTGCAACACCCTGCAGAGGAGAAGAGATCGC
TACGCACTGCACTGATGCTGCAGTTGGGTTTGGAACCGGGAAAATGTGTC
GTCTACAAAGGCAAGCGGTTTCCAAACCATAGAAACCATGCTGATCTGCA
GAGGATTTTGGACTCTCCACAAACACTGCTTCTGTATCCCAGTCGGGACT
CGGTCCCACTGGAAGAGGTGGACCACAGTGCGGGTCCTTATACACTGGTG
CTCATCGATGGTACCTGGCCTCAGGCTAAAGCCATTTACGCTAGCAGTCC
GGCTCTACACCGCCTGCGACAGGTGAAACTCATCGCCGTGGGTATAAGTG
ACTACATCATCCGTACACAGCCTACTGAAGGATGCCTTAGCACACTAGAG
ACCGCTGCGCAATGCCTGGCAGTGCTGGAATCTCGGCCAGAGCTGAGGCA
AACGCTCGTGCGACCGCTGCACACGCTGTGCAAGTACCAACTAGACAACG
GAGCCGTGGAGCACCAGTCCAAGGAGTTTCTATTGAAGAACAACCAGTAC
CCCAAGCCCATTGGCAAGCGGCTCAGCCGTCTGCTTAGAAACACCGCCTG
CGATGGCAATGAGGAAACGGCAAGCTTTCTAGACCAT
BO12529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-RA | 756 | CG10050-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-RA | 1894 | CG10050-RA | 84..836 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7250020..7250692 | 97..769 | 3365 | 100 | Plus |
| 3R | 32079331 | 3R | 7249878..7249957 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:10:00 has no hits.
BO12529.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:10 Download gff for
BO12529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:13 Download gff for
BO12529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 77..839 | 10..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:06 Download gff for
BO12529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 84..836 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:11 Download gff for
BO12529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 77..839 | 10..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:18 Download gff for
BO12529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 84..836 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:18 Download gff for
BO12529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7249878..7249957 | 17..96 | 100 | -> | Plus |
| 3R | 7250020..7250692 | 97..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:06 Download gff for
BO12529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3075600..3075679 | 17..96 | 100 | -> | Plus |
| arm_3R | 3075742..3076414 | 97..771 | 99 | | Plus |
BO12529.pep Sequence
Translation from 16 to 787
> BO12529.pep
MEDDAWLDLVGISADPPNRRNKCEKCKRPVVVCWCPALPHPPEAVSSQIV
ILQHPAEEKRSLRTALMLQLGLEPGKCVVYKGKRFPNHRNHADLQRILDS
PQTLLLYPSRDSVPLEEVDHSAGPYTLVLIDGTWPQAKAIYASSPALHRL
RQVKLIAVGISDYIIRTQPTEGCLSTLETAAQCLAVLESRPELRQTLVRP
LHTLCKYQLDNGAVEHQSKEFLLKNNQYPKPIGKRLSRLLRNTACDGNEE
TASFLDH
BO12529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-PA | 251 | CG10050-PA | 1..251 | 1..251 | 1329 | 100 | Plus |
