Clone Sequence Records
BO12530.3prime Sequence
707 bp (706 high quality bases) assembled on 2006-05-08
> BO12530.3prime
ATGGTCTAGAAAGCTTGCATTACTCAAAACTTGCTGGTTGGGTTCGGGAG
TGGCGTCCGGGAGCTGAGAGGTGCTTCGTCCGTGGTAAAGATTACCGGCC
ATATCGATGGCGAAATTGTGGTCCACGGGATTGGCCAACGCTGTCTCAAT
GGCTGCATCCAAGTTTTCCCTAGTGATATAGTTCTTGGAACGCTCAATCT
CGAGCAGCACCCGCTGGTTGGCCTGCTCCTTGCGCTCCTCCTCGCGCAGC
TGTTGTGCCTCCAATCGCTCCTGAATATAGGCCACCTTTTCCTCACGCTT
CTTGGCCAATCGCTGATCACGCTCCTTGGCTATGGCAGCGTTCCAGGCAG
CATTGGCATCCAGGCATTTCTGGAACTCGGCCTCCTCCTGCTCGGGAGTG
AGCACGATGTGATCTGCTGTGGATGTTTCCTCGTGGCGGACGACTTCCTC
CCTTAGAAACTGACGCACTGAGCGAAGCTGCGTTTTGTACTGGTTGTGTA
GCCTCATGAGCTCCGTGCGCTCCTCCTCCGACTGCTTCTTGCGTTCAGGC
ACGCGGAACATCTTGCTCTTGGCCACCGGCAGCCATCGCGGTTTCCTGCG
CCAGCGGACGAACTCGAGGGCGAAACTATTTCCGACCGTCTTCCCGGTGG
GCAGGGTGGACTGCGTCAGCAGCTGGCATCCCGCTCGCAGCATGTCGACT
GATAACT
BO12530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7354-PA | 678 | mRpS26-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-RA | 825 | CG7354-RA | 84..758 | 693..19 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18106967..18107432 | 484..19 | 2330 | 100 | Minus |
3L | 28110227 | 3L | 18106662..18106870 | 693..485 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:26:32 has no hits.
BO12530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:26 Download gff for
BO12530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7354-PA | 1..678 | 15..693 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:11 Download gff for
BO12530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7354-PA | 1..678 | 15..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:42 Download gff for
BO12530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..763 | 11..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:40 Download gff for
BO12530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..763 | 11..693 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:40 Download gff for
BO12530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18106662..18106870 | 485..693 | 100 | -> | Minus |
3L | 18106967..18107437 | 11..484 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:42 Download gff for
BO12530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18099762..18099970 | 485..693 | 100 | -> | Minus |
arm_3L | 18100067..18100537 | 11..484 | 99 | | Minus |
BO12530.5prime Sequence
707 bp (706 high quality bases) assembled on 2006-05-08
> BO12530.5prime
GAAGTTATCAGTCGACATGCTGCGAGCGGGATGCCAGCTGCTGACGCAGT
CCACCCTGCCCACCGGGAAGACGGTCGGAAATAGTTTCGCCCTCGAGTTC
GTCCGCTGGCGCAGGAAACCGCGATGGCTGCCGGTGGCCAAGAGCAAGAT
GTTCCGCGTGCCTGAACGCAAGAAGCAGTCGGAGGAGGAGCGCACGGAGC
TCATGAGGCTACACAACCAGTACAAAACGCAGCTTCGCTCAGTGCGTCAG
TTTCTAAGGGAGGAAGTCGTCCGCCACGAGGAAACATCCACAGCAGATCA
CATCGTGCTCACTCCCGAGCAGGAGGAGGCCGAGTTCCAGAAATGCCTGG
ATGCCAATGCTGCCTGGAACGCTGCCATAGCCAAGGAGCGTGATCAGCGA
TTGGCCAAGAAGCGTGAGGAAAAGGTGGCCTATATTCAGGAGCGATTGGA
GGCACAACAGCTGCGCGAGGAGGAGCGCAAGGAGCAGGCCAACCAGCGGG
TGCTGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTG
GATGCAGCCATTGAGACAGCGTTGGCCAATCCCGTGGACCACAATTTCGC
CATCGATATGGCCGGTAATCTTTACCACGGACGAAGCACCTCTCAGCTCC
CGGACGCCACTCCCGAACCCAACCAGCAAGTTTTGAGTAATGCAAGCTTT
CTAGACC
BO12530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7354-PA | 678 | mRpS26-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-RA | 825 | CG7354-RA | 84..758 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18106967..18107432 | 226..691 | 2330 | 100 | Plus |
3L | 28110227 | 3L | 18106662..18106870 | 17..225 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:57:32 has no hits.
BO12530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:27 Download gff for
BO12530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7354-PA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:12 Download gff for
BO12530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7354-PA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:20 Download gff for
BO12530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..763 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:21 Download gff for
BO12530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..763 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:21 Download gff for
BO12530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18106662..18106870 | 17..225 | 100 | -> | Plus |
3L | 18106967..18107437 | 226..699 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:20 Download gff for
BO12530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18099762..18099970 | 17..225 | 100 | -> | Plus |
arm_3L | 18100067..18100537 | 226..699 | 99 | | Plus |
BO12530.complete Sequence
709 bp assembled on 2006-10-11
GenBank Submission: FJ632475
> BO12530.complete
GAAGTTATCAGTCGACATGCTGCGAGCGGGATGCCAGCTGCTGACGCAGT
CCACCCTGCCCACCGGGAAGACGGTCGGAAATAGTTTCGCCCTCGAGTTC
GTCCGCTGGCGCAGGAAACCGCGATGGCTGCCGGTGGCCAAGAGCAAGAT
GTTCCGCGTGCCTGAACGCAAGAAGCAGTCGGAGGAGGAGCGCACGGAGC
TCATGAGGCTACACAACCAGTACAAAACGCAGCTTCGCTCAGTGCGTCAG
TTTCTAAGGGAGGAAGTCGTCCGCCACGAGGAAACATCCACAGCAGATCA
CATCGTGCTCACTCCCGAGCAGGAGGAGGCCGAGTTCCAGAAATGCCTGG
ATGCCAATGCTGCCTGGAACGCTGCCATAGCCAAGGAGCGTGATCAGCGA
TTGGCCAAGAAGCGTGAGGAAAAGGTGGCCTATATTCAGGAGCGATTGGA
GGCACAACAGCTGCGCGAGGAGGAGCGCAAGGAGCAGGCCAACCAGCGGG
TGCTGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTG
GATGCAGCCATTGAGACAGCGTTGGCCAATCCCGTGGACCACAATTTCGC
CATCGATATGGCCGGTAATCTTTACCACGGACGAAGCACCTCTCAGCTCC
CGGACGCCACTCCCGAACCCAACCAGCAAGTTTTGAGTAATGCAAGCTTT
CTAGACCAT
BO12530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-RA | 678 | CG7354-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-RA | 825 | CG7354-RA | 84..758 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18106967..18107432 | 226..691 | 2330 | 100 | Plus |
3L | 28110227 | 3L | 18106662..18106870 | 17..225 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:16:45 has no hits.
BO12530.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:36 Download gff for
BO12530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:39 Download gff for
BO12530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 82..761 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:30 Download gff for
BO12530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..758 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:37 Download gff for
BO12530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 82..761 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:44 Download gff for
BO12530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..758 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:44 Download gff for
BO12530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18106662..18106870 | 17..225 | 100 | -> | Plus |
3L | 18106967..18107432 | 226..693 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:30 Download gff for
BO12530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18099762..18099970 | 17..225 | 100 | -> | Plus |
arm_3L | 18100067..18100532 | 226..693 | 99 | | Plus |
BO12530.pep Sequence
Translation from 16 to 709
> BO12530.pep
MLRAGCQLLTQSTLPTGKTVGNSFALEFVRWRRKPRWLPVAKSKMFRVPE
RKKQSEEERTELMRLHNQYKTQLRSVRQFLREEVVRHEETSTADHIVLTP
EQEEAEFQKCLDANAAWNAAIAKERDQRLAKKREEKVAYIQERLEAQQLR
EEERKEQANQRVLLEIERSKNYITRENLDAAIETALANPVDHNFAIDMAG
NLYHGRSTSQLPDATPEPNQQVLSNASFLDH
BO12530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-PA | 225 | CG7354-PA | 1..225 | 1..225 | 1149 | 100 | Plus |