Clone BO12530 Report

Search the DGRC for BO12530

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS26-RA
Protein status:BO12530.pep: validated full length
Sequenced Size:709

Clone Sequence Records

BO12530.3prime Sequence

707 bp (706 high quality bases) assembled on 2006-05-08

> BO12530.3prime
ATGGTCTAGAAAGCTTGCATTACTCAAAACTTGCTGGTTGGGTTCGGGAG
TGGCGTCCGGGAGCTGAGAGGTGCTTCGTCCGTGGTAAAGATTACCGGCC
ATATCGATGGCGAAATTGTGGTCCACGGGATTGGCCAACGCTGTCTCAAT
GGCTGCATCCAAGTTTTCCCTAGTGATATAGTTCTTGGAACGCTCAATCT
CGAGCAGCACCCGCTGGTTGGCCTGCTCCTTGCGCTCCTCCTCGCGCAGC
TGTTGTGCCTCCAATCGCTCCTGAATATAGGCCACCTTTTCCTCACGCTT
CTTGGCCAATCGCTGATCACGCTCCTTGGCTATGGCAGCGTTCCAGGCAG
CATTGGCATCCAGGCATTTCTGGAACTCGGCCTCCTCCTGCTCGGGAGTG
AGCACGATGTGATCTGCTGTGGATGTTTCCTCGTGGCGGACGACTTCCTC
CCTTAGAAACTGACGCACTGAGCGAAGCTGCGTTTTGTACTGGTTGTGTA
GCCTCATGAGCTCCGTGCGCTCCTCCTCCGACTGCTTCTTGCGTTCAGGC
ACGCGGAACATCTTGCTCTTGGCCACCGGCAGCCATCGCGGTTTCCTGCG
CCAGCGGACGAACTCGAGGGCGAAACTATTTCCGACCGTCTTCCCGGTGG
GCAGGGTGGACTGCGTCAGCAGCTGGCATCCCGCTCGCAGCATGTCGACT
GATAACT

BO12530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7354-PA 678 mRpS26-RA 1..675 693..19 3375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-RA 825 CG7354-RA 84..758 693..19 3375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18106967..18107432 484..19 2330 100 Minus
3L 28110227 3L 18106662..18106870 693..485 1045 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:26:32 has no hits.

BO12530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:26 Download gff for BO12530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7354-PA 1..678 15..693 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:11 Download gff for BO12530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7354-PA 1..678 15..693 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:42 Download gff for BO12530.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..763 11..693 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:40 Download gff for BO12530.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..763 11..693 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:40 Download gff for BO12530.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18106662..18106870 485..693 100 -> Minus
3L 18106967..18107437 11..484 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:42 Download gff for BO12530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18099762..18099970 485..693 100 -> Minus
arm_3L 18100067..18100537 11..484 99   Minus

BO12530.5prime Sequence

707 bp (706 high quality bases) assembled on 2006-05-08

> BO12530.5prime
GAAGTTATCAGTCGACATGCTGCGAGCGGGATGCCAGCTGCTGACGCAGT
CCACCCTGCCCACCGGGAAGACGGTCGGAAATAGTTTCGCCCTCGAGTTC
GTCCGCTGGCGCAGGAAACCGCGATGGCTGCCGGTGGCCAAGAGCAAGAT
GTTCCGCGTGCCTGAACGCAAGAAGCAGTCGGAGGAGGAGCGCACGGAGC
TCATGAGGCTACACAACCAGTACAAAACGCAGCTTCGCTCAGTGCGTCAG
TTTCTAAGGGAGGAAGTCGTCCGCCACGAGGAAACATCCACAGCAGATCA
CATCGTGCTCACTCCCGAGCAGGAGGAGGCCGAGTTCCAGAAATGCCTGG
ATGCCAATGCTGCCTGGAACGCTGCCATAGCCAAGGAGCGTGATCAGCGA
TTGGCCAAGAAGCGTGAGGAAAAGGTGGCCTATATTCAGGAGCGATTGGA
GGCACAACAGCTGCGCGAGGAGGAGCGCAAGGAGCAGGCCAACCAGCGGG
TGCTGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTG
GATGCAGCCATTGAGACAGCGTTGGCCAATCCCGTGGACCACAATTTCGC
CATCGATATGGCCGGTAATCTTTACCACGGACGAAGCACCTCTCAGCTCC
CGGACGCCACTCCCGAACCCAACCAGCAAGTTTTGAGTAATGCAAGCTTT
CTAGACC

BO12530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7354-PA 678 mRpS26-RA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-RA 825 CG7354-RA 84..758 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18106967..18107432 226..691 2330 100 Plus
3L 28110227 3L 18106662..18106870 17..225 1045 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:57:32 has no hits.

BO12530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:27 Download gff for BO12530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7354-PA 1..678 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:12 Download gff for BO12530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7354-PA 1..678 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:20 Download gff for BO12530.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..763 17..699 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:21 Download gff for BO12530.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..763 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:21 Download gff for BO12530.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18106662..18106870 17..225 100 -> Plus
3L 18106967..18107437 226..699 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:20 Download gff for BO12530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18099762..18099970 17..225 100 -> Plus
arm_3L 18100067..18100537 226..699 99   Plus

BO12530.complete Sequence

709 bp assembled on 2006-10-11

GenBank Submission: FJ632475

> BO12530.complete
GAAGTTATCAGTCGACATGCTGCGAGCGGGATGCCAGCTGCTGACGCAGT
CCACCCTGCCCACCGGGAAGACGGTCGGAAATAGTTTCGCCCTCGAGTTC
GTCCGCTGGCGCAGGAAACCGCGATGGCTGCCGGTGGCCAAGAGCAAGAT
GTTCCGCGTGCCTGAACGCAAGAAGCAGTCGGAGGAGGAGCGCACGGAGC
TCATGAGGCTACACAACCAGTACAAAACGCAGCTTCGCTCAGTGCGTCAG
TTTCTAAGGGAGGAAGTCGTCCGCCACGAGGAAACATCCACAGCAGATCA
CATCGTGCTCACTCCCGAGCAGGAGGAGGCCGAGTTCCAGAAATGCCTGG
ATGCCAATGCTGCCTGGAACGCTGCCATAGCCAAGGAGCGTGATCAGCGA
TTGGCCAAGAAGCGTGAGGAAAAGGTGGCCTATATTCAGGAGCGATTGGA
GGCACAACAGCTGCGCGAGGAGGAGCGCAAGGAGCAGGCCAACCAGCGGG
TGCTGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTG
GATGCAGCCATTGAGACAGCGTTGGCCAATCCCGTGGACCACAATTTCGC
CATCGATATGGCCGGTAATCTTTACCACGGACGAAGCACCTCTCAGCTCC
CGGACGCCACTCCCGAACCCAACCAGCAAGTTTTGAGTAATGCAAGCTTT
CTAGACCAT

BO12530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-RA 678 CG7354-PA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-RA 825 CG7354-RA 84..758 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18106967..18107432 226..691 2330 100 Plus
3L 28110227 3L 18106662..18106870 17..225 1045 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:16:45 has no hits.

BO12530.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:36 Download gff for BO12530.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 1..678 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:39 Download gff for BO12530.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 82..761 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:30 Download gff for BO12530.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..758 17..693 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:37 Download gff for BO12530.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 82..761 17..699 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:44 Download gff for BO12530.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..758 17..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:44 Download gff for BO12530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18106662..18106870 17..225 100 -> Plus
3L 18106967..18107432 226..693 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:30 Download gff for BO12530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18099762..18099970 17..225 100 -> Plus
arm_3L 18100067..18100532 226..693 99   Plus

BO12530.pep Sequence

Translation from 16 to 709

> BO12530.pep
MLRAGCQLLTQSTLPTGKTVGNSFALEFVRWRRKPRWLPVAKSKMFRVPE
RKKQSEEERTELMRLHNQYKTQLRSVRQFLREEVVRHEETSTADHIVLTP
EQEEAEFQKCLDANAAWNAAIAKERDQRLAKKREEKVAYIQERLEAQQLR
EEERKEQANQRVLLEIERSKNYITRENLDAAIETALANPVDHNFAIDMAG
NLYHGRSTSQLPDATPEPNQQVLSNASFLDH

BO12530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-PA 225 CG7354-PA 1..225 1..225 1149 100 Plus