Clone Sequence Records
BO12535.3prime Sequence
837 bp (763 high quality bases) assembled on 2006-05-08
> BO12535.3prime
ATGGTCTAGAAAGCTTGCTGTATCCGACTTCCACAGCTTGATGGTCTTGT
CGTTCTCGAGCGCCGCGGAAGCAATGATGTTCTCCGTGGGATGGCAGGCG
GTGCACAGAACGGTATCGGTGTGTCCCTGCAGCTTTTGCACCACCTCCTT
GCTCTGCAGATTCCAAATGTAGACCATGTTGTCCTCGCTGCCACTCACGA
TCCACTTTCCTCCCGTCACCGAGAAGTTGGCGAATATGCAGTACTTCTCA
TTCTTGTGACCCGTATACGTCTTCAGGCACTTGCCCTTCGAGTAGTCCCA
CAACTTGAGCGTATTATCCAGCGTGGCGGCCAAAATGTACTTGCCATTGG
GCGAGAACTTTACAAAGCTGACGGGCGGATTGTCGTCGTCGATCAGGGTT
TTCAAGCACTGTCCACTGGCCGTGTCCCATATGCGACAGAGGCCGTCGTA
GCTGCTGCTCACGATCAGCGATCCGTCGCGATTGAAATGTACCGCCGAAA
CGGGATCGGAATGGGCGGGTAGAGTCTTCAGACACTTGCCGGTGCGCACA
TCCCATATGCGAACGCTCTCGTCGAAGCTGCCGGAGACGATCAGATTGGA
CTGCGGATTAAAGTTGCAGCAGAACACATAGTTGCTGTGGCCCTTCAGAG
TTTTCAAGCTCTTCCCGGTGCTCAGCTCCCAGACCTTGAGCGTCTTGTCA
TCACTGCCGCTCACGAGGAGTCGCGAGTCTGAGCTCCAGGCCACATCGCT
GATGCCCAGCTTGTGGCCCGAAATGGTCTTCTCGAACTTGCCATCGTATG
CTCCCCAGATTTTGATTAGTTTATCAGCGGAGGAGCT
BO12535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17437-PA | 1086 | wds-RA | 265..1083 | 837..19 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1973 | CG17437-RB | 564..1382 | 837..19 | 4095 | 100 | Minus |
| wds-RA | 1634 | CG17437-RA | 564..1382 | 837..19 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2586761..2587386 | 830..205 | 3130 | 100 | Minus |
| X | 23542271 | X | 2587439..2587626 | 206..19 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:36:30 has no hits.
BO12535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:33 Download gff for
BO12535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-PA | 265..1086 | 18..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:22 Download gff for
BO12535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17437-PA | 265..1086 | 18..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:38 Download gff for
BO12535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 564..1382 | 19..837 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:47:43 Download gff for
BO12535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 564..1382 | 19..837 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:47:43 Download gff for
BO12535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2586753..2587386 | 205..837 | 99 | -> | Minus |
| X | 2587441..2587626 | 19..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:38 Download gff for
BO12535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2480786..2481419 | 205..837 | 99 | -> | Minus |
| arm_X | 2481474..2481659 | 19..204 | 100 | | Minus |
BO12535.5prime Sequence
842 bp (815 high quality bases) assembled on 2006-05-08
> BO12535.5prime
GAAGTTATCAGTCGACATGGTGCCCATCGGAGCCGTGCACGGCGGCCATC
CCGGCGTAGTGCATCCGCCACAGCAACCACTGCCCACGGCGCCCAGCGGC
CCAAACTCGCTGCAGCCGAACTCGGTGGGCCAGCCGGGGGCCACCACCTC
CTCGAACAGCAGCGCCTCCAACAAGAGCTCGCTATCCGTCAAGCCCAACT
ACACGCTCAAGTTCACGCTGGCCGGGCACACCAAGGCGGTGTCGGCGGTC
AAGTTCAGTCCGAATGGCGAGTGGCTGGCCAGCTCCTCCGCTGATAAACT
AATCAAAATCTGGGGAGCATACGATGGCAAGTTCGAGAAGACCATTTCGG
GCCACAAGCTGGGCATCAGCGATGTGGCCTGGAGCTCAGACTCGCGACTC
CTCGTGAGCGGCAGTGATGACAAGACGCTCAAGGTCTGGGAGCTGAGCAC
CGGGAAGAGCTTGAAAACTCTGAAGGGCCACAGCAACTATGTGTTCTGCT
GCAACTTTAATCCGCAGTCCAATCTGATCGTCTCCGGCAGCTTCGACGAG
AGCGTTCGCATATGGGATGTGCGCACCGGCAAGTGTCTGAAGACTCTACC
CGCCCATTCCGATCCCGTTTCGGCGGTACATTTCAATCGCGACGGATCGC
TGATCGTGAGCAGCAGCTACGACGGCCTCTGTCGCATATGGGACACGGCC
AGTGGACAGTGCTTGAAAACCCTGATCGACGACGACAATCCGCCCGTCAG
CTTTGTAAAGTTCTCGCCCAATGGCAAGTACATTTTGGCCGCCACGCTGG
ATAATACGCTCAAGTTGTGGGACTACTCGAAGGGCAAGTGCC
BO12535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17437-PA | 1086 | wds-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1973 | CG17437-RB | 297..1125 | 14..842 | 4145 | 100 | Plus |
| wds-RA | 1634 | CG17437-RA | 297..1125 | 14..842 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2586761..2587315 | 288..842 | 2775 | 100 | Plus |
| X | 23542271 | X | 2586276..2586549 | 14..287 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:16:22 has no hits.
BO12535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:35 Download gff for
BO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:24 Download gff for
BO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17437-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:15 Download gff for
BO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 295..1125 | 10..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:29 Download gff for
BO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 295..1125 | 10..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:29 Download gff for
BO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2586274..2586549 | 10..287 | 99 | -> | Plus |
| X | 2586761..2587315 | 288..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:15 Download gff for
BO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2480307..2480582 | 10..287 | 99 | -> | Plus |
| arm_X | 2480794..2481348 | 288..842 | 100 | | Plus |
BO12535.complete Sequence
1117 bp assembled on 2006-10-11
GenBank Submission: FJ632477
> BO12535.complete
GAAGTTATCAGTCGACATGGTGCCCATCGGAGCCGTGCACGGCGGCCATC
CCGGCGTAGTGCATCCGCCACAGCAACCACTGCCCACGGCGCCCAGCGGC
CCAAACTCGCTGCAGCCGAACTCGGTGGGCCAGCCGGGGGCCACCACCTC
CTCGAACAGCAGCGCCTCCAACAAGAGCTCGCTATCCGTCAAGCCCAACT
ACACGCTCAAGTTCACGCTGGCCGGGCACACCAAGGCGGTGTCGGCGGTC
AAGTTCAGTCCGAATGGCGAGTGGCTGGCCAGCTCCTCCGCTGATAAACT
AATCAAAATCTGGGGAGCATACGATGGCAAGTTCGAGAAGACCATTTCGG
GCCACAAGCTGGGCATCAGCGATGTGGCCTGGAGCTCAGACTCGCGACTC
CTCGTGAGCGGCAGTGATGACAAGACGCTCAAGGTCTGGGAGCTGAGCAC
CGGGAAGAGCTTGAAAACTCTGAAGGGCCACAGCAACTATGTGTTCTGCT
GCAACTTTAATCCGCAGTCCAATCTGATCGTCTCCGGCAGCTTCGACGAG
AGCGTTCGCATATGGGATGTGCGCACCGGCAAGTGTCTGAAGACTCTACC
CGCCCATTCCGATCCCGTTTCGGCGGTACATTTCAATCGCGACGGATCGC
TGATCGTGAGCAGCAGCTACGACGGCCTCTGTCGCATATGGGACACGGCC
AGTGGACAGTGCTTGAAAACCCTGATCGACGACGACAATCCGCCCGTCAG
CTTTGTAAAGTTCTCGCCCAATGGCAAGTACATTTTGGCCGCCACGCTGG
ATAATACGCTCAAGTTGTGGGACTACTCGAAGGGCAAGTGCCTGAAGACG
TATACGGGTCACAAGAATGAGAAGTACTGCATATTCGCCAACTTCTCGGT
GACGGGAGGAAAGTGGATCGTGAGTGGCAGCGAGGACAACATGGTCTACA
TTTGGAATCTGCAGAGCAAGGAGGTGGTGCAAAAGCTGCAGGGACACACC
GATACCGTTCTGTGCACCGCCTGCCATCCCACGGAGAACATCATTGCTTC
CGCGGCGCTCGAGAACGACAAGACCATCAAGCTGTGGAAGTCGGATACAG
CAAGCTTTCTAGACCAT
BO12535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1086 | CG17437-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
| wds-RA | 1086 | CG17437-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1973 | CG17437-RB | 297..1382 | 14..1099 | 5430 | 100 | Plus |
| wds-RA | 1634 | CG17437-RA | 297..1382 | 14..1099 | 5430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2586761..2587386 | 288..913 | 3130 | 100 | Plus |
| X | 23542271 | X | 2586276..2586549 | 14..287 | 1370 | 100 | Plus |
| X | 23542271 | X | 2587439..2587626 | 912..1099 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:10:03 has no hits.
BO12535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:38 Download gff for
BO12535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 1..1086 | 17..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:42 Download gff for
BO12535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 298..1385 | 10..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:24 Download gff for
BO12535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 300..1382 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:39 Download gff for
BO12535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 298..1385 | 10..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:42 Download gff for
BO12535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 300..1382 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:42 Download gff for
BO12535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2587441..2587626 | 914..1101 | 98 | | Plus |
| X | 2586279..2586549 | 17..287 | 100 | -> | Plus |
| X | 2586761..2587386 | 288..913 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:24 Download gff for
BO12535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2480312..2480582 | 17..287 | 100 | -> | Plus |
| arm_X | 2480794..2481419 | 288..913 | 100 | -> | Plus |
| arm_X | 2481474..2481659 | 914..1101 | 98 | | Plus |
BO12535.pep Sequence
Translation from 16 to 1117
> BO12535.pep
MVPIGAVHGGHPGVVHPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSA
SNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWG
AYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLK
TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP
VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS
PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW
IVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALEN
DKTIKLWKSDTASFLDH
BO12535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-PB | 361 | CG17437-PB | 1..361 | 1..361 | 1929 | 100 | Plus |
| wds-PA | 361 | CG17437-PA | 1..361 | 1..361 | 1929 | 100 | Plus |
| CG10931-PA | 345 | CG10931-PA | 41..342 | 57..359 | 937 | 55.4 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 101..409 | 65..358 | 421 | 29.2 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 101..409 | 65..358 | 421 | 29.2 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 166..409 | 50..269 | 306 | 31.3 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 309..411 | 84..186 | 205 | 37.9 | Plus |
