Clone BO12540 Report

Search the DGRC for BO12540

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG11659-RA
Protein status:BO12540.pep: validated full length
Sequenced Size:1672

Clone Sequence Records

BO12540.3prime Sequence

873 bp (858 high quality bases) assembled on 2006-05-08

> BO12540.3prime
ATGGTCTAGAAAGCTTGCTGTATTAATTTGACTAAGTAATATATTTTTCC
TATTTTTTAAATGCAAAAAGTGGGCCTTGTTGGCCATTCGATTGGTCTTT
CCATTGGCACTACGCTGTAGGTCATCCACAATGACGGCTCCTCCGTTCAA
CTGCTTGTACTTGGAATCAGTCCGAGACCTCACATAGTCCACCACATCCT
GGGCCTCCAGCTCACTGCCCAGTTTCTTAACAACAGCAGCAGCAGCTTCG
TCTCCAAAGATGTTGCTCCATATCCCGAAGACACAGACCTCGGCGACCTG
GGGCATCTCTGAGATGACGCTTTCAATATCGTTTGGATAGTACATGATGT
TCTGGTACTTCAGCATCTCCTTCTTTCGGTCCATAATGTACAAGAAGCCA
TCTCGATCCATGTATCCGAGGTCCCCGGAGTGATACCATCCCAGTGAATC
TCGCATGTTACGAGTCTCAACTTCGTTTCCGTAGTATCCCGACCAGTGCT
GGTTATTCATGATGCACACCTCTCCGATCTCATCGGGTCCAAGCGATTCG
CCGTCATCATTTTTTATCTTCATCTTTAGCCCATTGACCAATTGACCCAC
CGATCCGGTTTTCTCGTCGAAGTGACAGTTGATGGTGGCCATGGCACCCA
GTTCTGTAAATCCATAAACAAACTGCAGGCAATTATGGCTAAGACGGCTA
CGGATGCCTTTCTGAACCTCCAAGGCAGCCCGAGATCCTCCAAACATGTA
GCACCGTAGGCTCGACAGATCGCACGTCTCGAAATCTGGGCAGTTAATCA
TTAGAGCCATAGATGATGGTGGCTGTATGGTCCACGTAACCTTGTACTCT
TCGATGATTCGCAAGGCAAAGGC

BO12540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11659-PA 1641 CG11659-RA 784..1638 873..19 4275 100 Minus
CG6300-PA 1614 CG6300-RA 784..1609 873..48 3930 99 Minus
CG11407-PA 1617 CG11407-RA 1282..1355 375..302 145 87.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11659-RA 1705 CG11659-RA 834..1688 873..19 4275 100 Minus
CG6300-RA 1724 CG6300-RA 834..1659 873..48 4010 99 Minus
CG11407-RA 1789 CG11407-RA 952..1642 767..77 575 72.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19775476..19776330 19..873 4275 100 Plus
3R 32079331 3R 19771447..19772272 48..873 4010 99 Plus
3R 32079331 3R 19782308..19782998 767..77 545 71.9 Minus
3L 28110227 3L 5872947..5873261 438..124 300 73 Minus
Blast to na_te.dros performed 2015-02-12 03:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6956..7001 67..23 110 73.9 Minus

BO12540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:44 Download gff for BO12540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11659-PA 784..1641 15..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:37 Download gff for BO12540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11659-PA 784..1641 15..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:53:14 Download gff for BO12540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 834..1691 15..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:21 Download gff for BO12540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 834..1691 15..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:21 Download gff for BO12540.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19775473..19776330 15..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:53:14 Download gff for BO12540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15601195..15602052 15..873 99   Plus

BO12540.5prime Sequence

891 bp (755 high quality bases) assembled on 2006-05-08

> BO12540.5prime
GAAGTTATCAGTCGACATGCCGTACACACCAGAAAATTCCTACGATAATG
ATCAAAAGATCTGGAGCGGTGAGCCGGTTGTCAAATACTTCGATCCGGAC
TTGTCCATCGGAGAGATAATTTTCCACGAGATGCGGCGGCATCCGCAGCT
TACTGCCCAGATCTCTGCTACGGAGGGTACTGTGTTGACCAGAGGGGAGC
TCCTTGCCAACGCCATGCGCTTGGCCAGCTATATGCGATCATTGGGACTC
CTTCAATCCGATATAGTGGGCCTCATAGGCCGGAATACCACCCACATGCT
TGCCGTAGCCTACGCCTGTTTCTTCAACGGAATAGCTTTTCACTCACTCA
ACATTACATACGATCGCGATACGATCGAAAAGATCTACAAGGTCACAAGG
CCTTCTATTATTTTCTGCGATGGAGATGAGTTTGAGAAGGTTCGATCTGC
CACTGCAGAACTGGATGTTAAGATTGTCACCATGCGCAATCATCCGTTGG
ATTCCATAAAGATCGATGAAGTTGTGGCCACGCCCATCGAAGAAAACTTC
CAGCCAGCTAAGCTGGAAAAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCTTCGGGAACAACTGGTACTCCAAAGGCAGTAACTATAACTAACAGTC
GGCACATCCTCGCAGGCAACTATCATCTGACCACCGCTGATGTTCAGTAC
TCTCACAACACCCTTGACTGGATCACTGGTTTGCTTACCACCATTACCTC
CGGAGTGTTCAGCACTACCCGCATCATTGCGGACAATGCCTTCGATCCCG
CCTTTGCCTTGCGAATCATCGAAGAGTACAAGGTTACGTGGACCATACAG
CCACCATCATCTATGGGTCTAATGATTAACTGGCCCGATTT

BO12540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11659-PA 1641 CG11659-RA 1..866 17..882 4305 99.8 Plus
CG6300-PA 1614 CG6300-RA 1..866 17..882 4180 99.3 Plus
CG11407-PA 1617 CG11407-RA 548..587 564..603 175 97.5 Plus
CG11407-PA 1617 CG11407-RA 403..479 419..495 160 88.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11659-RA 1705 CG11659-RA 51..925 17..891 4330 99.7 Plus
CG6300-RA 1724 CG6300-RA 51..925 17..891 4255 99.1 Plus
CG11407-RA 1789 CG11407-RA 63..844 17..798 1180 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19776520..19777033 672..159 2570 100 Minus
3R 32079331 3R 19772462..19772975 672..159 2510 99.2 Minus
3R 32079331 3R 19776239..19776457 891..673 1050 98.6 Minus
3R 32079331 3R 19772181..19772399 891..673 1035 98.2 Minus
3R 32079331 3R 19781508..19781998 158..648 940 79.4 Plus
3R 32079331 3R 19773032..19773175 160..17 720 100 Minus
3R 32079331 3R 19777087..19777230 160..17 720 100 Minus
3R 32079331 3R 19781308..19781441 17..150 220 77.6 Plus
Blast to na_te.dros performed on 2015-02-11 23:49:52 has no hits.

BO12540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:45 Download gff for BO12540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11659-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:38 Download gff for BO12540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11659-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:54 Download gff for BO12540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 47..925 9..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:09 Download gff for BO12540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 47..925 9..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:09 Download gff for BO12540.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19776239..19776457 673..891 98 <- Minus
3R 19776520..19777031 161..672 100 <- Minus
3R 19777087..19777234 9..160 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:54 Download gff for BO12540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15601961..15602179 673..891 98 <- Minus
arm_3R 15602242..15602753 161..672 100 <- Minus
arm_3R 15602809..15602956 9..160 97   Minus

BO12540.complete Sequence

1672 bp assembled on 2007-06-22

GenBank Submission: FJ632479

> BO12540.complete
GAAGTTATCAGTCGACATGCCGTACACACCAGAAAATTCCTACGATAATG
ATCAAAAGATCTGGAGCGGTGAGCCGGTTGTCAAATACTTCGATCCGGAC
TTGTCCATCGGAGAGATAATTTTCCACGAGATGCGGCGGCATCCGCAGCT
TACTGCCCAGATCTCTGCTACGGAGGGTACTGTGTTGACCAGAGGGGAGC
TCCTTGCCAACGCCATGCGCTTGGCCAGCTATATGCGATCATTGGGACTC
CTTCAATCCGATATAGTGGGCCTCATAGGCCGGAATACCACCCACATGCT
TGCCGTAGCCTACGCCTGTTTCTTCAACGGAATAGCTTTTCACTCACTCA
ACATTACATACGATCGCGATACGATCGAAAAGATCTACAAGGTCACAAGG
CCTTCTATTATTTTCTGCGATGGAGATGAGTTTGAGAAGGTTCGATCTGC
CACTGCAGAACTGGATGTTAAGATTGTCACCATGCGCAATCATCCGTTGG
ATTCCATAAAGATCGATGAAGTTGTGGCCACGCCCATCGAAGAAAACTTC
CAGCCAGCTAAGCTGGAAAAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCTTCGGGAACAACTGGTACTCCAAAGGCAGTAACTATAACTAACAGTC
GGCACATCCTCGCAGGCAACTATCATCTGACCACCGCTGATGTTCAGTAC
TCTCACAACACCCTTGACTGGATCACTGGTTTGCTTACCACCATTACCTC
CGGAGTGTTCAGCACTACCCGCATCATTGCGGACAATGCCTTCGATCCCG
CCTTTGCCTTGCGAATCATCGAAGAGTACAAGGTTACGTGGACCATACAG
CCACCATCATCTATGGCTCTAATGATTAACTGCCCAGATTTCGAGACGTG
CGATCTGTCGAGCCTACGGTGCTACATGTTTGGAGGATCTCGGGCTGCCT
TGGAGGTTCAGAAAGGCATCCGTAGCCGTCTTAGCCATAATTGCCTGCAG
TTTGTTTATGGATTTACAGAACTGGGTGCCATGGCCACCATCAACTGTCA
CTTCGACGAGAAAACCGGATCGGTGGGTCAATTGGTCAATGGGCTAAAGA
TGAAGATAAAAAATGATGACGGCGAATCGCTTGGACCCGATGAGATCGGA
GAGGTGTGCATCATGAATAACCAGCACTGGTCGGGATACTACGGAAACGA
AGTTGAGACTCGTAACATGCGAGATTCACTGGGATGGTATCACTCCGGGG
ACCTCGGATACATGGATCGAGATGGCTTCTTGTACATTATGGACCGAAAG
AAGGAGATGCTGAAGTACCAGAACATCATGTACTATCCAAACGATATTGA
AAGCGTCATCTCAGAGATGCCCCAGGTCGCCGAGGTCTGTGTCTTCGGGA
TATGGAGCAACATCTTTGGAGACGAAGCTGCTGCTGCTGTTGTTAAGAAA
CTGGGCAGTGAGCTGGAGGCCCAGGATGTGGTGGACTATGTGAGGTCTCG
GACTGATTCCAAGTACAAGCAGTTGAACGGAGGAGCCGTCATTGTGGATG
ACCTACAGCGTAGTGCCAATGGAAAGACCAATCGAATGGCCAACAAGGCC
CACTTTTTGCATTTAAAAAATAGGAAAAATATATTACTTAGTCAAATTAA
TACAGCAAGCTTTCTAGACCAT

BO12540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11659-RA 1641 CG11659-PA 1..1638 17..1654 8190 100 Plus
CG6300-RA 1614 CG6300-PA 1..1609 17..1625 7850 99.2 Plus
CG11407-RA 1617 CG11407-PA 1..1580 17..1596 1570 73.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11659-RA 1705 CG11659-RA 51..1688 17..1654 8190 100 Plus
CG6300-RA 1724 CG6300-RA 51..1659 17..1625 7850 99.2 Plus
CG11407-RA 1789 CG11407-RA 63..1642 17..1596 1570 73.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19775476..19776457 1654..673 4910 100 Minus
3R 32079331 3R 19771447..19772399 1625..673 4630 99.1 Minus
3R 32079331 3R 19776520..19777033 672..159 2570 100 Minus
3R 32079331 3R 19772462..19772975 672..159 2510 99.2 Minus
3R 32079331 3R 19781508..19781998 158..648 940 79.4 Plus
3R 32079331 3R 19773032..19773175 160..17 720 100 Minus
3R 32079331 3R 19777087..19777230 160..17 720 100 Minus
3R 32079331 3R 19782082..19782998 680..1596 550 70.7 Plus
3L 28110227 3L 5872947..5873261 1235..1549 300 73 Plus
3R 32079331 3R 19781308..19781441 17..150 220 77.6 Plus
Blast to na_te.dros performed on 2014-11-27 08:47:39 has no hits.

BO12540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:20 Download gff for BO12540.complete
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 1..1641 17..1658 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:59 Download gff for BO12540.complete
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 47..1691 9..1658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:34 Download gff for BO12540.complete
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 51..1688 17..1656 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:20 Download gff for BO12540.complete
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 47..1691 9..1658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:32 Download gff for BO12540.complete
Subject Subject Range Query Range Percent Splice Strand
CG11659-RA 51..1688 17..1656 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:32 Download gff for BO12540.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19777087..19777230 17..160 100   Minus
3R 19775474..19776457 673..1656 99 <- Minus
3R 19776520..19777031 161..672 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:34 Download gff for BO12540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15601196..15602179 673..1656 99 <- Minus
arm_3R 15602242..15602753 161..672 100 <- Minus
arm_3R 15602809..15602952 17..160 100   Minus

BO12540.pep Sequence

Translation from 16 to 1672

> BO12540.pep
MPYTPENSYDNDQKIWSGEPVVKYFDPDLSIGEIIFHEMRRHPQLTAQIS
ATEGTVLTRGELLANAMRLASYMRSLGLLQSDIVGLIGRNTTHMLAVAYA
CFFNGIAFHSLNITYDRDTIEKIYKVTRPSIIFCDGDEFEKVRSATAELD
VKIVTMRNHPLDSIKIDEVVATPIEENFQPAKLEKGNDQTLAILCSSGTT
GTPKAVTITNSRHILAGNYHLTTADVQYSHNTLDWITGLLTTITSGVFST
TRIIADNAFDPAFALRIIEEYKVTWTIQPPSSMALMINCPDFETCDLSSL
RCYMFGGSRAALEVQKGIRSRLSHNCLQFVYGFTELGAMATINCHFDEKT
GSVGQLVNGLKMKIKNDDGESLGPDEIGEVCIMNNQHWSGYYGNEVETRN
MRDSLGWYHSGDLGYMDRDGFLYIMDRKKEMLKYQNIMYYPNDIESVISE
MPQVAEVCVFGIWSNIFGDEAAAAVVKKLGSELEAQDVVDYVRSRTDSKY
KQLNGGAVIVDDLQRSANGKTNRMANKAHFLHLKNRKNILLSQINTASFL
DH

BO12540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11659-PA 546 CG11659-PA 1..546 1..546 2859 100 Plus
CG6300-PA 537 CG6300-PA 1..536 1..536 2789 99.1 Plus
CG11407-PA 538 CG11407-PA 1..535 1..535 2083 72 Plus
CG18586-PB 545 CG18586-PB 16..544 8..538 1603 56.5 Plus
CG5568-PA 545 CG5568-PA 10..544 2..536 1569 54.2 Plus