Clone Sequence Records
BO12540.3prime Sequence
873 bp (858 high quality bases) assembled on 2006-05-08
> BO12540.3prime
ATGGTCTAGAAAGCTTGCTGTATTAATTTGACTAAGTAATATATTTTTCC
TATTTTTTAAATGCAAAAAGTGGGCCTTGTTGGCCATTCGATTGGTCTTT
CCATTGGCACTACGCTGTAGGTCATCCACAATGACGGCTCCTCCGTTCAA
CTGCTTGTACTTGGAATCAGTCCGAGACCTCACATAGTCCACCACATCCT
GGGCCTCCAGCTCACTGCCCAGTTTCTTAACAACAGCAGCAGCAGCTTCG
TCTCCAAAGATGTTGCTCCATATCCCGAAGACACAGACCTCGGCGACCTG
GGGCATCTCTGAGATGACGCTTTCAATATCGTTTGGATAGTACATGATGT
TCTGGTACTTCAGCATCTCCTTCTTTCGGTCCATAATGTACAAGAAGCCA
TCTCGATCCATGTATCCGAGGTCCCCGGAGTGATACCATCCCAGTGAATC
TCGCATGTTACGAGTCTCAACTTCGTTTCCGTAGTATCCCGACCAGTGCT
GGTTATTCATGATGCACACCTCTCCGATCTCATCGGGTCCAAGCGATTCG
CCGTCATCATTTTTTATCTTCATCTTTAGCCCATTGACCAATTGACCCAC
CGATCCGGTTTTCTCGTCGAAGTGACAGTTGATGGTGGCCATGGCACCCA
GTTCTGTAAATCCATAAACAAACTGCAGGCAATTATGGCTAAGACGGCTA
CGGATGCCTTTCTGAACCTCCAAGGCAGCCCGAGATCCTCCAAACATGTA
GCACCGTAGGCTCGACAGATCGCACGTCTCGAAATCTGGGCAGTTAATCA
TTAGAGCCATAGATGATGGTGGCTGTATGGTCCACGTAACCTTGTACTCT
TCGATGATTCGCAAGGCAAAGGC
BO12540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11659-PA | 1641 | CG11659-RA | 784..1638 | 873..19 | 4275 | 100 | Minus |
CG6300-PA | 1614 | CG6300-RA | 784..1609 | 873..48 | 3930 | 99 | Minus |
CG11407-PA | 1617 | CG11407-RA | 1282..1355 | 375..302 | 145 | 87.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11659-RA | 1705 | CG11659-RA | 834..1688 | 873..19 | 4275 | 100 | Minus |
CG6300-RA | 1724 | CG6300-RA | 834..1659 | 873..48 | 4010 | 99 | Minus |
CG11407-RA | 1789 | CG11407-RA | 952..1642 | 767..77 | 575 | 72.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19775476..19776330 | 19..873 | 4275 | 100 | Plus |
3R | 32079331 | 3R | 19771447..19772272 | 48..873 | 4010 | 99 | Plus |
3R | 32079331 | 3R | 19782308..19782998 | 767..77 | 545 | 71.9 | Minus |
3L | 28110227 | 3L | 5872947..5873261 | 438..124 | 300 | 73 | Minus |
Blast to na_te.dros performed 2015-02-12 03:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6956..7001 | 67..23 | 110 | 73.9 | Minus |
BO12540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:44 Download gff for
BO12540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-PA | 784..1641 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:37 Download gff for
BO12540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-PA | 784..1641 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:53:14 Download gff for
BO12540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 834..1691 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:21 Download gff for
BO12540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 834..1691 | 15..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:21 Download gff for
BO12540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19775473..19776330 | 15..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:53:14 Download gff for
BO12540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15601195..15602052 | 15..873 | 99 | | Plus |
BO12540.5prime Sequence
891 bp (755 high quality bases) assembled on 2006-05-08
> BO12540.5prime
GAAGTTATCAGTCGACATGCCGTACACACCAGAAAATTCCTACGATAATG
ATCAAAAGATCTGGAGCGGTGAGCCGGTTGTCAAATACTTCGATCCGGAC
TTGTCCATCGGAGAGATAATTTTCCACGAGATGCGGCGGCATCCGCAGCT
TACTGCCCAGATCTCTGCTACGGAGGGTACTGTGTTGACCAGAGGGGAGC
TCCTTGCCAACGCCATGCGCTTGGCCAGCTATATGCGATCATTGGGACTC
CTTCAATCCGATATAGTGGGCCTCATAGGCCGGAATACCACCCACATGCT
TGCCGTAGCCTACGCCTGTTTCTTCAACGGAATAGCTTTTCACTCACTCA
ACATTACATACGATCGCGATACGATCGAAAAGATCTACAAGGTCACAAGG
CCTTCTATTATTTTCTGCGATGGAGATGAGTTTGAGAAGGTTCGATCTGC
CACTGCAGAACTGGATGTTAAGATTGTCACCATGCGCAATCATCCGTTGG
ATTCCATAAAGATCGATGAAGTTGTGGCCACGCCCATCGAAGAAAACTTC
CAGCCAGCTAAGCTGGAAAAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCTTCGGGAACAACTGGTACTCCAAAGGCAGTAACTATAACTAACAGTC
GGCACATCCTCGCAGGCAACTATCATCTGACCACCGCTGATGTTCAGTAC
TCTCACAACACCCTTGACTGGATCACTGGTTTGCTTACCACCATTACCTC
CGGAGTGTTCAGCACTACCCGCATCATTGCGGACAATGCCTTCGATCCCG
CCTTTGCCTTGCGAATCATCGAAGAGTACAAGGTTACGTGGACCATACAG
CCACCATCATCTATGGGTCTAATGATTAACTGGCCCGATTT
BO12540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11659-PA | 1641 | CG11659-RA | 1..866 | 17..882 | 4305 | 99.8 | Plus |
CG6300-PA | 1614 | CG6300-RA | 1..866 | 17..882 | 4180 | 99.3 | Plus |
CG11407-PA | 1617 | CG11407-RA | 548..587 | 564..603 | 175 | 97.5 | Plus |
CG11407-PA | 1617 | CG11407-RA | 403..479 | 419..495 | 160 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11659-RA | 1705 | CG11659-RA | 51..925 | 17..891 | 4330 | 99.7 | Plus |
CG6300-RA | 1724 | CG6300-RA | 51..925 | 17..891 | 4255 | 99.1 | Plus |
CG11407-RA | 1789 | CG11407-RA | 63..844 | 17..798 | 1180 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19776520..19777033 | 672..159 | 2570 | 100 | Minus |
3R | 32079331 | 3R | 19772462..19772975 | 672..159 | 2510 | 99.2 | Minus |
3R | 32079331 | 3R | 19776239..19776457 | 891..673 | 1050 | 98.6 | Minus |
3R | 32079331 | 3R | 19772181..19772399 | 891..673 | 1035 | 98.2 | Minus |
3R | 32079331 | 3R | 19781508..19781998 | 158..648 | 940 | 79.4 | Plus |
3R | 32079331 | 3R | 19773032..19773175 | 160..17 | 720 | 100 | Minus |
3R | 32079331 | 3R | 19777087..19777230 | 160..17 | 720 | 100 | Minus |
3R | 32079331 | 3R | 19781308..19781441 | 17..150 | 220 | 77.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:49:52 has no hits.
BO12540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:45 Download gff for
BO12540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:38 Download gff for
BO12540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:54 Download gff for
BO12540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 47..925 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:09 Download gff for
BO12540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 47..925 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:09 Download gff for
BO12540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19776239..19776457 | 673..891 | 98 | <- | Minus |
3R | 19776520..19777031 | 161..672 | 100 | <- | Minus |
3R | 19777087..19777234 | 9..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:54 Download gff for
BO12540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15601961..15602179 | 673..891 | 98 | <- | Minus |
arm_3R | 15602242..15602753 | 161..672 | 100 | <- | Minus |
arm_3R | 15602809..15602956 | 9..160 | 97 | | Minus |
BO12540.complete Sequence
1672 bp assembled on 2007-06-22
GenBank Submission: FJ632479
> BO12540.complete
GAAGTTATCAGTCGACATGCCGTACACACCAGAAAATTCCTACGATAATG
ATCAAAAGATCTGGAGCGGTGAGCCGGTTGTCAAATACTTCGATCCGGAC
TTGTCCATCGGAGAGATAATTTTCCACGAGATGCGGCGGCATCCGCAGCT
TACTGCCCAGATCTCTGCTACGGAGGGTACTGTGTTGACCAGAGGGGAGC
TCCTTGCCAACGCCATGCGCTTGGCCAGCTATATGCGATCATTGGGACTC
CTTCAATCCGATATAGTGGGCCTCATAGGCCGGAATACCACCCACATGCT
TGCCGTAGCCTACGCCTGTTTCTTCAACGGAATAGCTTTTCACTCACTCA
ACATTACATACGATCGCGATACGATCGAAAAGATCTACAAGGTCACAAGG
CCTTCTATTATTTTCTGCGATGGAGATGAGTTTGAGAAGGTTCGATCTGC
CACTGCAGAACTGGATGTTAAGATTGTCACCATGCGCAATCATCCGTTGG
ATTCCATAAAGATCGATGAAGTTGTGGCCACGCCCATCGAAGAAAACTTC
CAGCCAGCTAAGCTGGAAAAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCTTCGGGAACAACTGGTACTCCAAAGGCAGTAACTATAACTAACAGTC
GGCACATCCTCGCAGGCAACTATCATCTGACCACCGCTGATGTTCAGTAC
TCTCACAACACCCTTGACTGGATCACTGGTTTGCTTACCACCATTACCTC
CGGAGTGTTCAGCACTACCCGCATCATTGCGGACAATGCCTTCGATCCCG
CCTTTGCCTTGCGAATCATCGAAGAGTACAAGGTTACGTGGACCATACAG
CCACCATCATCTATGGCTCTAATGATTAACTGCCCAGATTTCGAGACGTG
CGATCTGTCGAGCCTACGGTGCTACATGTTTGGAGGATCTCGGGCTGCCT
TGGAGGTTCAGAAAGGCATCCGTAGCCGTCTTAGCCATAATTGCCTGCAG
TTTGTTTATGGATTTACAGAACTGGGTGCCATGGCCACCATCAACTGTCA
CTTCGACGAGAAAACCGGATCGGTGGGTCAATTGGTCAATGGGCTAAAGA
TGAAGATAAAAAATGATGACGGCGAATCGCTTGGACCCGATGAGATCGGA
GAGGTGTGCATCATGAATAACCAGCACTGGTCGGGATACTACGGAAACGA
AGTTGAGACTCGTAACATGCGAGATTCACTGGGATGGTATCACTCCGGGG
ACCTCGGATACATGGATCGAGATGGCTTCTTGTACATTATGGACCGAAAG
AAGGAGATGCTGAAGTACCAGAACATCATGTACTATCCAAACGATATTGA
AAGCGTCATCTCAGAGATGCCCCAGGTCGCCGAGGTCTGTGTCTTCGGGA
TATGGAGCAACATCTTTGGAGACGAAGCTGCTGCTGCTGTTGTTAAGAAA
CTGGGCAGTGAGCTGGAGGCCCAGGATGTGGTGGACTATGTGAGGTCTCG
GACTGATTCCAAGTACAAGCAGTTGAACGGAGGAGCCGTCATTGTGGATG
ACCTACAGCGTAGTGCCAATGGAAAGACCAATCGAATGGCCAACAAGGCC
CACTTTTTGCATTTAAAAAATAGGAAAAATATATTACTTAGTCAAATTAA
TACAGCAAGCTTTCTAGACCAT
BO12540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11659-RA | 1641 | CG11659-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
CG6300-RA | 1614 | CG6300-PA | 1..1609 | 17..1625 | 7850 | 99.2 | Plus |
CG11407-RA | 1617 | CG11407-PA | 1..1580 | 17..1596 | 1570 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11659-RA | 1705 | CG11659-RA | 51..1688 | 17..1654 | 8190 | 100 | Plus |
CG6300-RA | 1724 | CG6300-RA | 51..1659 | 17..1625 | 7850 | 99.2 | Plus |
CG11407-RA | 1789 | CG11407-RA | 63..1642 | 17..1596 | 1570 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19775476..19776457 | 1654..673 | 4910 | 100 | Minus |
3R | 32079331 | 3R | 19771447..19772399 | 1625..673 | 4630 | 99.1 | Minus |
3R | 32079331 | 3R | 19776520..19777033 | 672..159 | 2570 | 100 | Minus |
3R | 32079331 | 3R | 19772462..19772975 | 672..159 | 2510 | 99.2 | Minus |
3R | 32079331 | 3R | 19781508..19781998 | 158..648 | 940 | 79.4 | Plus |
3R | 32079331 | 3R | 19773032..19773175 | 160..17 | 720 | 100 | Minus |
3R | 32079331 | 3R | 19777087..19777230 | 160..17 | 720 | 100 | Minus |
3R | 32079331 | 3R | 19782082..19782998 | 680..1596 | 550 | 70.7 | Plus |
3L | 28110227 | 3L | 5872947..5873261 | 1235..1549 | 300 | 73 | Plus |
3R | 32079331 | 3R | 19781308..19781441 | 17..150 | 220 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:47:39 has no hits.
BO12540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:20 Download gff for
BO12540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 1..1641 | 17..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:59 Download gff for
BO12540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 47..1691 | 9..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:34 Download gff for
BO12540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 51..1688 | 17..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:20 Download gff for
BO12540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 47..1691 | 9..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:32 Download gff for
BO12540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11659-RA | 51..1688 | 17..1656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:32 Download gff for
BO12540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19777087..19777230 | 17..160 | 100 | | Minus |
3R | 19775474..19776457 | 673..1656 | 99 | <- | Minus |
3R | 19776520..19777031 | 161..672 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:34 Download gff for
BO12540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15601196..15602179 | 673..1656 | 99 | <- | Minus |
arm_3R | 15602242..15602753 | 161..672 | 100 | <- | Minus |
arm_3R | 15602809..15602952 | 17..160 | 100 | | Minus |
BO12540.pep Sequence
Translation from 16 to 1672
> BO12540.pep
MPYTPENSYDNDQKIWSGEPVVKYFDPDLSIGEIIFHEMRRHPQLTAQIS
ATEGTVLTRGELLANAMRLASYMRSLGLLQSDIVGLIGRNTTHMLAVAYA
CFFNGIAFHSLNITYDRDTIEKIYKVTRPSIIFCDGDEFEKVRSATAELD
VKIVTMRNHPLDSIKIDEVVATPIEENFQPAKLEKGNDQTLAILCSSGTT
GTPKAVTITNSRHILAGNYHLTTADVQYSHNTLDWITGLLTTITSGVFST
TRIIADNAFDPAFALRIIEEYKVTWTIQPPSSMALMINCPDFETCDLSSL
RCYMFGGSRAALEVQKGIRSRLSHNCLQFVYGFTELGAMATINCHFDEKT
GSVGQLVNGLKMKIKNDDGESLGPDEIGEVCIMNNQHWSGYYGNEVETRN
MRDSLGWYHSGDLGYMDRDGFLYIMDRKKEMLKYQNIMYYPNDIESVISE
MPQVAEVCVFGIWSNIFGDEAAAAVVKKLGSELEAQDVVDYVRSRTDSKY
KQLNGGAVIVDDLQRSANGKTNRMANKAHFLHLKNRKNILLSQINTASFL
DH
BO12540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11659-PA | 546 | CG11659-PA | 1..546 | 1..546 | 2859 | 100 | Plus |
CG6300-PA | 537 | CG6300-PA | 1..536 | 1..536 | 2789 | 99.1 | Plus |
CG11407-PA | 538 | CG11407-PA | 1..535 | 1..535 | 2083 | 72 | Plus |
CG18586-PB | 545 | CG18586-PB | 16..544 | 8..538 | 1603 | 56.5 | Plus |
CG5568-PA | 545 | CG5568-PA | 10..544 | 2..536 | 1569 | 54.2 | Plus |