Clone Sequence Records
BO12541.3prime Sequence
371 bp (370 high quality bases) assembled on 2006-05-08
> BO12541.3prime
ATGGTCTAGAAAGCTTGCGCGGAACTTCTTGCCGAATAGGCTCTTGAAGC
TGCCAAGTCCACCGAAGCCGCCGCCGAAACCGTGTCCTCCAAAACCACCG
CCAAAGCCGTGACCAAGACCACCGAATCCTCCCTTCAAGCCGCCGAGTCC
TCCAAAGCCGCCGAACTTGCCGCCAAGTCCTCCAAGTCCTCCCAGTCCTC
GAACCACTCTCTCGCCCTCCAGTTCATCAACTTGTGGCTCCTGTTCCGCC
TCCAATTCCAAGAGTGTCAGTGGTTCTCCATTTTCGAAATCCACAGGTAT
GGCCAGAGAGCAGGAGATCACGGCGATCAGGGCGAGACTCAGGGCAAGGA
ACTTCATGTCGACTGATAACT
BO12541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-PA | 342 | CG13217-RA | 1..339 | 357..19 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-RA | 484 | CG13217-RA | 79..417 | 357..19 | 1695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11236270..11236608 | 19..357 | 1695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:41:44 has no hits.
BO12541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:46 Download gff for
BO12541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:39 Download gff for
BO12541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:52 Download gff for
BO12541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..423 | 13..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:32 Download gff for
BO12541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..423 | 13..357 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:32 Download gff for
BO12541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11236264..11236608 | 13..357 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:52 Download gff for
BO12541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7123769..7124113 | 13..357 | 99 | | Plus |
BO12541.5prime Sequence
371 bp (370 high quality bases) assembled on 2006-05-08
> BO12541.5prime
GAAGTTATCAGTCGACATGAAGTTCCTTGCCCTGAGTCTCGCCCTGATCG
CCGTGATCTCCTGCTCTCTGGCCATACCTGTGGATTTCGAAAATGGAGAA
CCACTGACACTCTTGGAATTGGAGGCGGAACAGGAGCCACAAGTTGATGA
ACTGGAGGGCGAGAGAGTGGTTCGAGGACTGGGAGGACTTGGAGGACTTG
GCGGCAAGTTCGGCGGCTTTGGAGGACTCGGCGGCTTGAAGGGAGGATTC
GGTGGTCTTGGTCACGGCTTTGGCGGTGGTTTTGGAGGACACGGTTTCGG
CGGCGGCTTCGGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGT
TCCGCGCAAGCTTTCTAGACC
BO12541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-PA | 342 | CG13217-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-RA | 484 | CG13217-RA | 79..417 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11236270..11236608 | 355..17 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:15 has no hits.
BO12541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:47 Download gff for
BO12541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:41 Download gff for
BO12541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:12 Download gff for
BO12541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..423 | 17..361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:28 Download gff for
BO12541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..423 | 17..361 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:28 Download gff for
BO12541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11236264..11236608 | 17..361 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:12 Download gff for
BO12541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7123769..7124113 | 17..361 | 99 | | Minus |
BO12541.complete Sequence
373 bp assembled on 2006-10-11
GenBank Submission: FJ632480
> BO12541.complete
GAAGTTATCAGTCGACATGAAGTTCCTTGCCCTGAGTCTCGCCCTGATCG
CCGTGATCTCCTGCTCTCTGGCCATACCTGTGGATTTCGAAAATGGAGAA
CCACTGACACTCTTGGAATTGGAGGCGGAACAGGAGCCACAAGTTGATGA
ACTGGAGGGCGAGAGAGTGGTTCGAGGACTGGGAGGACTTGGAGGACTTG
GCGGCAAGTTCGGCGGCTTTGGAGGACTCGGCGGCTTGAAGGGAGGATTC
GGTGGTCTTGGTCACGGCTTTGGCGGTGGTTTTGGAGGACACGGTTTCGG
CGGCGGCTTCGGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGT
TCCGCGCAAGCTTTCTAGACCAT
BO12541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-RA | 342 | CG13217-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-RA | 484 | CG13217-RA | 79..417 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11236270..11236608 | 355..17 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:09:33 has no hits.
BO12541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:42 Download gff for
BO12541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:45 Download gff for
BO12541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 76..420 | 17..361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:40 Download gff for
BO12541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..417 | 17..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:42 Download gff for
BO12541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 76..420 | 17..361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:06 Download gff for
BO12541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..417 | 17..357 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:06 Download gff for
BO12541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11236268..11236608 | 17..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:40 Download gff for
BO12541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7123773..7124113 | 17..357 | 99 | | Minus |
BO12541.pep Sequence
Translation from 16 to 373
> BO12541.pep
MKFLALSLALIAVISCSLAIPVDFENGEPLTLLELEAEQEPQVDELEGER
VVRGLGGLGGLGGKFGGFGGLGGLKGGFGGLGHGFGGGFGGHGFGGGFGG
LGSFKSLFGKKFRASFLDH
BO12541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-PA | 113 | CG13217-PA | 1..113 | 1..113 | 594 | 100 | Plus |
Listericin-PA | 121 | CG9080-PA | 3..95 | 2..100 | 157 | 43 | Plus |
CG34227-PA | 104 | CG34227-PA | 1..99 | 1..100 | 151 | 38.2 | Plus |
CG17738-PA | 110 | CG17738-PA | 4..106 | 5..100 | 147 | 38.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 49..94 | 54..100 | 147 | 63.8 | Plus |