Clone BO12541 Report

Search the DGRC for BO12541

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG13217-RA
Protein status:BO12541.pep: validated full length
Sequenced Size:373

Clone Sequence Records

BO12541.3prime Sequence

371 bp (370 high quality bases) assembled on 2006-05-08

> BO12541.3prime
ATGGTCTAGAAAGCTTGCGCGGAACTTCTTGCCGAATAGGCTCTTGAAGC
TGCCAAGTCCACCGAAGCCGCCGCCGAAACCGTGTCCTCCAAAACCACCG
CCAAAGCCGTGACCAAGACCACCGAATCCTCCCTTCAAGCCGCCGAGTCC
TCCAAAGCCGCCGAACTTGCCGCCAAGTCCTCCAAGTCCTCCCAGTCCTC
GAACCACTCTCTCGCCCTCCAGTTCATCAACTTGTGGCTCCTGTTCCGCC
TCCAATTCCAAGAGTGTCAGTGGTTCTCCATTTTCGAAATCCACAGGTAT
GGCCAGAGAGCAGGAGATCACGGCGATCAGGGCGAGACTCAGGGCAAGGA
ACTTCATGTCGACTGATAACT

BO12541.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-PA 342 CG13217-RA 1..339 357..19 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-RA 484 CG13217-RA 79..417 357..19 1695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11236270..11236608 19..357 1695 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:41:44 has no hits.

BO12541.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:46 Download gff for BO12541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-PA 1..342 15..357 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:39 Download gff for BO12541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-PA 1..342 15..357 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:52 Download gff for BO12541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..423 13..357 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:32 Download gff for BO12541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..423 13..357 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:32 Download gff for BO12541.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11236264..11236608 13..357 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:52 Download gff for BO12541.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7123769..7124113 13..357 99   Plus

BO12541.5prime Sequence

371 bp (370 high quality bases) assembled on 2006-05-08

> BO12541.5prime
GAAGTTATCAGTCGACATGAAGTTCCTTGCCCTGAGTCTCGCCCTGATCG
CCGTGATCTCCTGCTCTCTGGCCATACCTGTGGATTTCGAAAATGGAGAA
CCACTGACACTCTTGGAATTGGAGGCGGAACAGGAGCCACAAGTTGATGA
ACTGGAGGGCGAGAGAGTGGTTCGAGGACTGGGAGGACTTGGAGGACTTG
GCGGCAAGTTCGGCGGCTTTGGAGGACTCGGCGGCTTGAAGGGAGGATTC
GGTGGTCTTGGTCACGGCTTTGGCGGTGGTTTTGGAGGACACGGTTTCGG
CGGCGGCTTCGGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGT
TCCGCGCAAGCTTTCTAGACC

BO12541.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-PA 342 CG13217-RA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-RA 484 CG13217-RA 79..417 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11236270..11236608 355..17 1695 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:16:15 has no hits.

BO12541.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:47 Download gff for BO12541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-PA 1..342 17..359 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:41 Download gff for BO12541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-PA 1..342 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:12 Download gff for BO12541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..423 17..361 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:28 Download gff for BO12541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..423 17..361 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:28 Download gff for BO12541.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11236264..11236608 17..361 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:12 Download gff for BO12541.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7123769..7124113 17..361 99   Minus

BO12541.complete Sequence

373 bp assembled on 2006-10-11

GenBank Submission: FJ632480

> BO12541.complete
GAAGTTATCAGTCGACATGAAGTTCCTTGCCCTGAGTCTCGCCCTGATCG
CCGTGATCTCCTGCTCTCTGGCCATACCTGTGGATTTCGAAAATGGAGAA
CCACTGACACTCTTGGAATTGGAGGCGGAACAGGAGCCACAAGTTGATGA
ACTGGAGGGCGAGAGAGTGGTTCGAGGACTGGGAGGACTTGGAGGACTTG
GCGGCAAGTTCGGCGGCTTTGGAGGACTCGGCGGCTTGAAGGGAGGATTC
GGTGGTCTTGGTCACGGCTTTGGCGGTGGTTTTGGAGGACACGGTTTCGG
CGGCGGCTTCGGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGT
TCCGCGCAAGCTTTCTAGACCAT

BO12541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-RA 342 CG13217-PA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-RA 484 CG13217-RA 79..417 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11236270..11236608 355..17 1695 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:09:33 has no hits.

BO12541.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:42 Download gff for BO12541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 1..342 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:45 Download gff for BO12541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 76..420 17..361 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:40 Download gff for BO12541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..417 17..357 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:42 Download gff for BO12541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 76..420 17..361 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:06 Download gff for BO12541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..417 17..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:06 Download gff for BO12541.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11236268..11236608 17..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:40 Download gff for BO12541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7123773..7124113 17..357 99   Minus

BO12541.pep Sequence

Translation from 16 to 373

> BO12541.pep
MKFLALSLALIAVISCSLAIPVDFENGEPLTLLELEAEQEPQVDELEGER
VVRGLGGLGGLGGKFGGFGGLGGLKGGFGGLGHGFGGGFGGHGFGGGFGG
LGSFKSLFGKKFRASFLDH

BO12541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-PA 113 CG13217-PA 1..113 1..113 594 100 Plus
Listericin-PA 121 CG9080-PA 3..95 2..100 157 43 Plus
CG34227-PA 104 CG34227-PA 1..99 1..100 151 38.2 Plus
CG17738-PA 110 CG17738-PA 4..106 5..100 147 38.5 Plus
CG8157-PB 113 CG8157-PB 49..94 54..100 147 63.8 Plus