Clone Sequence Records
BO12542.3prime Sequence
886 bp (860 high quality bases) assembled on 2006-05-08
> BO12542.3prime
ATGGTCTAGAAAGCTTGCCTCACTAAAGAACCATGGATTCTGATAGACTC
GCATATTTTTGCCTTTAATCATCTGATTTTTTTCCAGCGTTACATTCCAA
AGTTTAACATCTCCTTGTATGTAGACAGTGTCCACCACCTCAGGGCTAAC
CTTATATTTAAAATCAGTCATAAACTGCCGATTGACATACACCTCAAAGG
ATGTTTTGGTACAAACAATGGCTAAACAAAAAGACCGACCAGGGCGAAAG
TTTGTGTCAAACTCCGAACGCTCTTCTTGTGCCCAAGCTCCATTAAGCCA
GGCATTCCTACACACCACCGCCTTTCCAATAGCGCCGCTGCTTGCTTTCG
AAAAACGTGGGTTTAAGTGGAATGCAATTACTGGATGTGGCCATATGTCC
TGCCCCTGTTGCAGGTTTATATAAAACGAGTGGGGAAGTAATCGCACTCT
CCCTTCAATCTTCAAGCATCGACCATCGACCAACGAATTTGGTGGCAATG
CTCCATAATAAGGCAAAGTAAGGCCAAGATCATTCGAACTATTGTTACGC
TTAGGCGAACTGTCCGACTGTGTGTTCGGGGCGCTAATAATGCACCACTC
ATGAGGTATTTTAACAGTCTCCTCAACGCTGGCATCAATTTCATTAATCC
CATCATCTATGTGAAGCTCAATGTTATTAGCCTCTGACTGGGGTAATCGC
TCAGGATATTTTAAGACCAAAGTTCGCTTCATTTCCACGTTACTTACATC
TCCCTTCACTTCCAGAATGCGAACATCCCTATAAGGGATTCGATGAGTGT
ACGCTGCAAAGTGTTGTCCGTTTACCGATATCATATAGCATGCCTCAGTA
ACTAGCACTTGAATGGAAAACTCCTCGCCTCGACTT
BO12542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11372-PA | 1512 | galectin-RA | 642..1509 | 886..19 | 4315 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-RF | 1536 | CG11372-RF | 553..1420 | 886..19 | 4325 | 99.9 | Minus |
| galectin-RD | 1430 | CG11372-RD | 447..1314 | 886..19 | 4325 | 99.9 | Minus |
| galectin-RE | 1458 | CG11372-RE | 475..1342 | 886..19 | 4325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 75228..76095 | 886..19 | 4325 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:45:56 has no hits.
BO12542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:48 Download gff for
BO12542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11372-PA | 642..1512 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:42 Download gff for
BO12542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11372-PA | 642..1512 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:47 Download gff for
BO12542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RE | 475..1342 | 19..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:47 Download gff for
BO12542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RE | 475..1342 | 19..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:47 Download gff for
BO12542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 75228..76095 | 19..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:47 Download gff for
BO12542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 75228..76095 | 19..886 | 99 | | Minus |
BO12542.5prime Sequence
885 bp (804 high quality bases) assembled on 2006-05-08
> BO12542.5prime
GAAGTTATCAGTCGACATGACGGCAATAATACTCCTGGCTTGCCACTCGG
TTCGCGAACTCGTCGATCTGTCAGATGCTCTGTGGCAGAACACTTTTAAT
ATCGAACGAAGTTTAAACTATTATCGCATCAAGCGCCGTTTGGAACTGTT
TCGATTTCATTGCCGCGAGCTTTGGTTGCGTCAGGTGTCAAAAACATCCG
ATCCAATGCATCGGAAGGCAGGCATAGATTTTGCAGCCATTGAGGCGGGT
GCAGACTGTGTCCTAAATATGGATGCCTTTGACGATACGACAACGGAACT
ACACAAGAGGTTTTTACAGGCGGAGGGCACAAGACCCTTTCCTTCGGATT
GCATCAGCGGCATCGAGGTGGTGGATGGAAATGAATTTAAAGCCTCATTT
TACGAATATGCAGATGCTGTGCCAAAATATTTTAACGACCAAATAGGGAA
ATTGAGCGAAGGGATAAGTTTCACGGTGACTGGGAATCTCTCTGTAAACT
GCGAGAGGTTTTCCATCAATCTGGTTTATAACAATGACTCTCGAGATGTG
GCGCTCCACATTAATCCACGGTTGCCACAAAACTATATTGTCCGCAACAC
CAAAGTACAGGACATTTGGGGAAACGAGGAAGTGTCCTCGGCATTGCCGT
TTCTACTAAGTCGAGGCGAGGAGTTTTCCATTCAAGTGCTAGTTACTGAG
GCATGCTATATGATATCGGTAAACGGACAACACTTTGCAGCGTACACTCA
TCGAATCCCTTATAGGGATGTTCGCATTCTGGAAGTGAAGGGAGATGTAA
GTAACGTGGAAATGAAGCGAACTTTGGTCTTAAAATATCCTGAGCGATTA
CCCCAGTCAGAGGCTAATAACATTGAGCTTCACAT
BO12542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11372-PA | 1512 | galectin-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-RA | 1841 | CG11372-RA | 217..1085 | 17..885 | 4345 | 100 | Plus |
| galectin-RE | 1458 | CG11372-RE | 21..702 | 204..885 | 3050 | 96.5 | Plus |
| galectin-RF | 1536 | CG11372-RF | 287..780 | 392..885 | 2470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 75076..75455 | 506..885 | 1900 | 100 | Plus |
| 2L | 23513712 | 2L | 72603..72978 | 17..392 | 1880 | 100 | Plus |
| 2L | 23513712 | 2L | 74903..75020 | 392..509 | 590 | 100 | Plus |
| 2L | 23513712 | 2L | 73505..73693 | 204..392 | 585 | 87.3 | Plus |
| 2L | 23513712 | 2L | 73410..73470 | 56..116 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:21:37 has no hits.
BO12542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:48 Download gff for
BO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11372-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:44 Download gff for
BO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11372-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:24 Download gff for
BO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 208..1085 | 7..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:17 Download gff for
BO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 208..1085 | 7..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:17 Download gff for
BO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 74903..75018 | 392..507 | 100 | -> | Plus |
| 2L | 72594..72977 | 7..391 | 98 | -> | Plus |
| 2L | 75078..75455 | 508..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:24 Download gff for
BO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 72594..72977 | 7..391 | 98 | -> | Plus |
| arm_2L | 74903..75018 | 392..507 | 100 | -> | Plus |
| arm_2L | 75078..75455 | 508..885 | 100 | | Plus |
BO12542.complete Sequence
1543 bp assembled on 2008-08-15
GenBank Submission: FJ638701
> BO12542.complete
GAAGTTATCAGTCGACATGACGGCAATAATACTCCTGGCTTGCCACTCGG
TTCGCGAACTCGTCGATCTGTCAGATGCTCTGTGGCAGAACACTTTTAAT
ATCGAACGAAGTTTAAACTATTATCGCATCAAGCGCCGTTTGGAACTGTT
TCGATTTCATTGCCGCGAGCTTTGGTTGCGTCAGGTGTCAAAAACATCCG
ATCCAATGCATCGGAAGGCAGGCATAGATTTTGCAGCCATTGAGGCGGGT
GCAGACTGTGTCCTAAATATGGATGCCTTTGACGATACGACAACGGAACT
ACACAAGAGGTTTTTACAGGCGGAGGGCACAAGACCCTTTCCTTCGGATT
GCATCAGCGGCATCGAGGTGGTGGATGGAAATGAATTTAAAGCCTCATTT
TACGAATATGCAGATGCTGTGCCAAAATATTTTAACGACCAAATAGGGAA
ATTGAGCGAAGGGATAAGTTTCACGGTGACTGGGAATCTCTCTGTAAACT
GCGAGAGGTTTTCCATCAATCTGGTTTATAACAATGACTCTCGAGATGTG
GCGCTCCACATTAATCCACGGTTGCCACAAAACTATATTGTCCGCAACAC
CAAAGTACAGGACATTTGGGGAAACGAGGAAGTGTCCTCGGCATTGCCGT
TTCTACTAAGTCGAGGCGAGGAGTTTTCCATTCAAGTGCTAGTTACTGAG
GCATGCTATATGATATCGGTAAACGGACAACACTTTGCAGCGTACACTCA
TCGAATCCCTTATAGGGATGTTCGCATTCTGGAAGTGAAGGGAGATGTAA
GTAACGTGGAAATGAAGCGAACTTTGGTCTTAAAATATCCTGAGCGATTA
CCCCAGTCAGAGGCTAATAACATTGAGCTTCACATAGATGATGGGATTAA
TGAAATTGATGCCAGCGTTGAGGAGACTGTTAAAATACCTCATGAGTGGT
GCATTATTAGCGCCCCGAACACACAGTCGGACAGTTCGCCTAAGCGTAAC
AATAGTTCGAATGATCTTGGCCTTACTTTGCCTTATTATGGAGCATTGCC
ACCAAATTCGTTGGTCGATGGTCGATGCTTGAAGATTGAAGGGAGAGTGC
GATTACTTCCCCACTCGTTTTATATAAACCTGCAACAGGGGCAGGACATA
TGGCCACATCCAGTAATTGCATTCCACTTAAACCCACGTTTTTCGAAAGC
AAGCAGCGGCGCTATTGGAAAGGCGGTGGTGTGTAGGAATGCCTGGCTTA
ATGGAGCTTGGGCACAAGAAGAGCGTTCGGAGTTTGACACAAACTTTCGC
CCTGGTCGGTCTTTTTGTTTAGCCATTGTTTGTACCAAAACATCCTTTGA
GGTGTATGTCAATCGGCAGTTTATGACTGATTTTAAATATAAGGTTAGCC
CTGAGGTGGTGGACACTGTCTACATACAAGGAGATGTTAAACTTTGGAAT
GTAACGCTGGAAAAAAATCAGATGATTAAAGGCAAAAATATGCGAGTCTA
TCAGAATCCATGGTTCTTTAGTGAGGCAAGCTTTCTAGACCAT
BO12542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-RA | 1512 | CG11372-PA | 1..1509 | 17..1525 | 7530 | 99.9 | Plus |
| galectin-RE | 1260 | CG11372-PE | 1..1257 | 269..1525 | 6060 | 98.8 | Plus |
| galectin-RD | 1206 | CG11372-PD | 70..1203 | 392..1525 | 5655 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-RA | 1841 | CG11372-RA | 217..1725 | 17..1525 | 7530 | 99.9 | Plus |
| galectin-RE | 1458 | CG11372-RE | 21..1342 | 204..1525 | 6235 | 98.1 | Plus |
| galectin-RF | 1536 | CG11372-RF | 287..1420 | 392..1525 | 5655 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 75076..76095 | 506..1525 | 5085 | 99.9 | Plus |
| 2L | 23513712 | 2L | 72603..72978 | 17..392 | 1880 | 100 | Plus |
| 2L | 23513712 | 2L | 74903..75020 | 392..509 | 590 | 100 | Plus |
| 2L | 23513712 | 2L | 73505..73693 | 204..392 | 585 | 87.3 | Plus |
| 2L | 23513712 | 2L | 73410..73470 | 56..116 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:22 has no hits.
BO12542.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:21 Download gff for
BO12542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 207..1724 | 7..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:45 Download gff for
BO12542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 217..1725 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:00 Download gff for
BO12542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 216..1724 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:29 Download gff for
BO12542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 217..1725 | 17..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:29 Download gff for
BO12542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 72603..72977 | 17..391 | 100 | -> | Plus |
| 2L | 74903..75018 | 392..507 | 100 | -> | Plus |
| 2L | 75078..76095 | 508..1527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:45 Download gff for
BO12542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 74903..75018 | 392..507 | 100 | -> | Plus |
| arm_2L | 72603..72977 | 17..391 | 100 | -> | Plus |
| arm_2L | 75078..76095 | 508..1527 | 99 | | Plus |
BO12542.pep Sequence
Translation from 16 to 1543
> BO12542.pep
MTAIILLACHSVRELVDLSDALWQNTFNIERSLNYYRIKRRLELFRFHCR
ELWLRQVSKTSDPMHRKAGIDFAAIEAGADCVLNMDAFDDTTTELHKRFL
QAEGTRPFPSDCISGIEVVDGNEFKASFYEYADAVPKYFNDQIGKLSEGI
SFTVTGNLSVNCERFSINLVYNNDSRDVALHINPRLPQNYIVRNTKVQDI
WGNEEVSSALPFLLSRGEEFSIQVLVTEACYMISVNGQHFAAYTHRIPYR
DVRILEVKGDVSNVEMKRTLVLKYPERLPQSEANNIELHIDDGINEIDAS
VEETVKIPHEWCIISAPNTQSDSSPKRNNSSNDLGLTLPYYGALPPNSLV
DGRCLKIEGRVRLLPHSFYINLQQGQDIWPHPVIAFHLNPRFSKASSGAI
GKAVVCRNAWLNGAWAQEERSEFDTNFRPGRSFCLAIVCTKTSFEVYVNR
QFMTDFKYKVSPEVVDTVYIQGDVKLWNVTLEKNQMIKGKNMRVYQNPWF
FSEASFLDH
BO12542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-PA | 503 | CG11372-PA | 1..503 | 1..503 | 2664 | 100 | Plus |
| galectin-PE | 419 | CG11372-PE | 1..419 | 85..503 | 2150 | 97.1 | Plus |
| galectin-PB | 402 | CG11372-PB | 24..402 | 125..503 | 2006 | 99.7 | Plus |
| galectin-PD | 401 | CG11372-PD | 24..401 | 126..503 | 2005 | 100 | Plus |
| galectin-PF | 272 | CG11372-PF | 1..272 | 232..503 | 1454 | 100 | Plus |
