Clone Sequence Records
BO12547.3prime Sequence
852 bp (799 high quality bases) assembled on 2006-05-08
> BO12547.3prime
ATGGTCTAGAAAGCTTGCGGCGTAGGGACCGCCGGAGGAGTCCAGCCCTC
GCGGAGCATTGGCGTAGCTGTCCTCAGCGAATGTGTCGCTCACGCCGGAT
CCGGAAACGGAACCCGAAGATGAGCCGGAACCGGACAGGACATTTTCTGA
GGCACCTGCTGCCGCTCCCGACGATCGAATGACATCCACCGACTTGGAGC
GCTCATCGCGAGCCACAAATGGAGTGGGCTGCGCCACCTGGGCAACAGGG
ACAACCACCGCCTTAAGGGCATAGGGCACCCGGTTGACCACAGCATTGAA
GCCATGCACATCATCCGCCGTGTAGGTCACGGTGCGCTTGTAGCCATCGG
GATCGATCAGGCTGTAGAATCCGCGCACCACATAACCATCCCGGGTCTCG
CTGTGCTCCTTGATGTCACCGGTGCTCGCGTCGTTCACGGCATAGTTGAA
GCTGTAGCTGGCGGGCGGAAAGACCTCGGGCTCCTGGTGCTGGCGCAGAA
CGGAGCTGACCACCAACGGTTCCGACTGCTGATGCTGAACTGTCTGCTGC
TCCTGCTGCTGCTGCGTCGATGAAACCACCTCCGAGTTCTGCTCGTGGCG
GAGAACGGGCAGCGGCGAGGGCAGCAGCACGGATTCGGCATTGGCGGCAC
TGGCCGCATTCTGGAGAAGATTGGAGGCCTGAACACTGGCCGTACGGCTG
CCGGCGGTGAACTGATTCCTGGCGGGCGCCACGTAGTCATAGCCATCGGG
CGTGGCCTCCGAGTTCAGAGCATTGTTGCTGGGCGTGTGGTAGTCGCTCA
GGAAATCCTCGCCAGAACTGGACGCACTGTTGGCCGCCTTCGCCTCCTTC
TC
BO12547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2973-PA | 909 | CG2973-RA | 73..906 | 852..19 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr23B-RA | 1066 | CG2973-RA | 136..969 | 852..19 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2838617..2839450 | 852..19 | 4170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:26:24 has no hits.
BO12547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:53 Download gff for
BO12547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2973-PA | 73..909 | 16..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:51 Download gff for
BO12547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2973-PA | 73..909 | 16..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:41 Download gff for
BO12547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 136..969 | 19..852 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:25 Download gff for
BO12547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 136..969 | 19..852 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:25 Download gff for
BO12547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2838617..2839450 | 19..852 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:41 Download gff for
BO12547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2838617..2839450 | 19..852 | 100 | | Minus |
BO12547.5prime Sequence
896 bp (791 high quality bases) assembled on 2006-05-08
> BO12547.5prime
GAAGTTATCAGTCGACATGGCAGCTAAGTTTTTCGCCCTGCTGTCTCTGG
CACTTTTGGCCACTAGCCAAGCGGAGTACAACTACAACGAGAAGGAGGCG
AAGGCGGCCAACAGTGCGTCCAGTTCTGGCGAGGATTTCCTGAGCGACTA
CCACACGCCCAGCAACAATGCTCTGAACTCGGAGGCCACGCCCGATGGCT
ATGACTACGTGGCGCCCGCCAGGAATCAGTTCACCGCCGGCAGCCGTACG
GCCAGTGTTCAGGCCTCCAATCTTCTCCAGAATGCGGCCAGTGCCGCCAA
TGCCGAATCCGTGCTGCTGCCCTCGCCGCTGCCCGTTCTCCGCCACGAGC
AGAACTCGGAGGTGGTTTCATCGACGCAGCAGCAGCAGGAGCAGCAGACA
GTTCAGCATCAGCAGTCGGAACCGTTGGTGGTCAGCTCCGTTCTGCGCCA
GCACCAGGAGCCCGAGGTCTTTCCGCCCGCCAGCTACAGCTTCAACTATG
CCGTGAACGACGCGAGCACCGGTGACATCAAGGAGCACAGCGAGACCCGG
GATGGTTATGTGGTGCGCGGATTCTACAGCCTGATCGATCCCGATGGCTA
CAAGCGCACCGTGACCTACACGGCGGATGATGTGCATGGCTTCAATGCTG
TGGTCAACCGGGTGCCCTATGCCCTTAAGGCGGTGGTTGTCCCTGTTGCC
CAGGTGGCGCAGCCCACTCCATTTGTGGCTCGCGATGAGCGCTCCAAGTC
GGTGGATGTCATTCGATCGTCGGGAGCGGCAGCAGGTGCCTCAGAAAATG
TCCTGTCCGGTTCCGGCTCATCTTCGGGTTCCGTTTCCGGATCCGGCGTG
AGCGACACATTCGCTGAGGACAGCTACGCCAATGCTCCGCGAGGGC
BO12547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2973-PA | 909 | CG2973-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr23B-RA | 1066 | CG2973-RA | 64..943 | 17..896 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2838555..2839424 | 27..896 | 4350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:42:38 has no hits.
BO12547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:54 Download gff for
BO12547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2973-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:52 Download gff for
BO12547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2973-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:23 Download gff for
BO12547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 61..943 | 14..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:25:08 Download gff for
BO12547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 61..943 | 14..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:25:08 Download gff for
BO12547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2838553..2839424 | 23..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:23 Download gff for
BO12547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2838553..2839424 | 23..896 | 99 | | Plus |
BO12547.complete Sequence
940 bp assembled on 2006-10-11
GenBank Submission: FJ632481
> BO12547.complete
GAAGTTATCAGTCGACATGGCAGCTAAGTTTTTCGCCCTGCTGTCTCTGG
CACTTTTGGCCACTAGCCAAGCGGAGTACAACTACAACGAGAAGGAGGCG
AAGGCGGCCAACAGTGCGTCCAGTTCTGGCGAGGATTTCCTGAGCGACTA
CCACACGCCCAGCAACAATGCTCTGAACTCGGAGGCCACGCCCGATGGCT
ATGACTACGTGGCGCCCGCCAGGAATCAGTTCACCGCCGGCAGCCGTACG
GCCAGTGTTCAGGCCTCCAATCTTCTCCAGAATGCGGCCAGTGCCGCCAA
TGCCGAATCCGTGCTGCTGCCCTCGCCGCTGCCCGTTCTCCGCCACGAGC
AGAACTCGGAGGTGGTTTCATCGACGCAGCAGCAGCAGGAGCAGCAGACA
GTTCAGCATCAGCAGTCGGAACCGTTGGTGGTCAGCTCCGTTCTGCGCCA
GCACCAGGAGCCCGAGGTCTTTCCGCCCGCCAGCTACAGCTTCAACTATG
CCGTGAACGACGCGAGCACCGGTGACATCAAGGAGCACAGCGAGACCCGG
GATGGTTATGTGGTGCGCGGATTCTACAGCCTGATCGATCCCGATGGCTA
CAAGCGCACCGTGACCTACACGGCGGATGATGTGCATGGCTTCAATGCTG
TGGTCAACCGGGTGCCCTATGCCCTTAAGGCGGTGGTTGTCCCTGTTGCC
CAGGTGGCGCAGCCCACTCCATTTGTGGCTCGCGATGAGCGCTCCAAGTC
GGTGGATGTCATTCGATCGTCGGGAGCGGCAGCAGGTGCCTCAGAAAATG
TCCTGTCCGGTTCCGGCTCATCTTCGGGTTCCGTTTCCGGATCCGGCGTG
AGCGACACATTCGCTGAGGACAGCTACGCCAATGCTCCGCGAGGGCTGGA
CTCCTCCGGCGGTCCCTACGCCGCAAGCTTTCTAGACCAT
BO12547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr23B-RA | 909 | CG2973-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr23B-RA | 1066 | CG2973-RA | 64..969 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2838555..2839450 | 27..922 | 4480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:11:12 has no hits.
BO12547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:43 Download gff for
BO12547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:47 Download gff for
BO12547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 58..966 | 14..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:34 Download gff for
BO12547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 64..969 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:43 Download gff for
BO12547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 58..966 | 14..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:52 Download gff for
BO12547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr23B-RA | 64..969 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:52 Download gff for
BO12547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2838553..2839450 | 23..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:34 Download gff for
BO12547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2838553..2839450 | 23..924 | 99 | | Plus |
BO12547.pep Sequence
Translation from 16 to 940
> BO12547.pep
MAAKFFALLSLALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN
NALNSEATPDGYDYVAPARNQFTAGSRTASVQASNLLQNAASAANAESVL
LPSPLPVLRHEQNSEVVSSTQQQQEQQTVQHQQSEPLVVSSVLRQHQEPE
VFPPASYSFNYAVNDASTGDIKEHSETRDGYVVRGFYSLIDPDGYKRTVT
YTADDVHGFNAVVNRVPYALKAVVVPVAQVAQPTPFVARDERSKSVDVIR
SSGAAAGASENVLSGSGSSSGSVSGSGVSDTFAEDSYANAPRGLDSSGGP
YAASFLDH
BO12547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr23B-PA | 302 | CG2973-PA | 1..302 | 1..302 | 1516 | 100 | Plus |
| Cpr31A-PA | 340 | CG33302-PA | 1..214 | 1..235 | 242 | 32.9 | Plus |
| Ccp84Ae-PA | 208 | CG1330-PA | 44..127 | 150..233 | 237 | 57.1 | Plus |
| Ccp84Ab-PA | 221 | CG1252-PA | 41..146 | 136..233 | 236 | 50.9 | Plus |
| Cpr64Aa-PA | 192 | CG15006-PA | 51..139 | 149..237 | 233 | 55.6 | Plus |
