Clone Sequence Records
BO12549.3prime Sequence
851 bp (847 high quality bases) assembled on 2006-05-08
> BO12549.3prime
ATGGTCTAGAAAGCTTGCAGCCTCAGTTTCAGACTGCAGCTTGGCAACAT
ATGCTGCCTTATGAGCTGCAATCTTAGTCTTCCGTTGCTCGTTTGTGAGT
TTCTTAGCATTCCACCTTTTCTTCGTAACGGCAGAAGACTTCTTAGCGGT
GACCTTGTGTGTAGGGTCGTTACGAATTGCCTGGTGGGCTTTTTTATAGA
TATCCTCAAGATCATCAGCACGAATGCCCAACTTGATGTATCGGCTAAAC
TGCCTTTTGAAGCTCTCCTCATCCTCCTCCTCCAAAGAACGCATATAGTC
TGCAACGTGCTGGCCAAATATATGAGCGCGATGCACATCGGCATTAAAGC
TCTTGGTTTCAGCAGAGTATCCAGGAAAGCGTTTCACAGAGTGAGGTATG
TTTAGACCACCATCAACTGCTCCCTTCATAGCGCCAAACACACGGGCACC
AGTTGTAGTACGAGCGAGTCCAACATCCAAGAAGCAACGGAATGCCCCTG
GGCCGTCATCAACAGGCTCGACGTTGAACTCCTCACCAGTCACTTCAGTG
CATCCTGCATATAGGGAGTCCAGTCCCAACTTGTTAAGGACACGACGGGC
GACCAGCAGGCCTGTGCAGTAAGCAGCAGCGTAGTTGGTCAATCCAACCT
GGATCCCGTATTTGGGAAGCTCATGGGAATAAGCAGCGCACACCACGCGA
TCACCCTCGATGCGAGCATAGGCGATCTGTACTGTGATGTCCTTGTTGGA
CAAACGTACGATCAAACGGTACTTGGGAGTGTTGTACTTGTTCTTGTCCT
GAAATGTTAGGCGTTTCCTGGCATAGTAATCGGTCTTTCCTTCGCGACGC
C
BO12549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17489-PA | 900 | RpL5-RA | 65..897 | 851..19 | 4165 | 100 | Minus |
CG17489-PB | 900 | RpL5-RB | 65..897 | 851..19 | 4165 | 100 | Minus |
CG17489-PC | 963 | RpL5-RC | 128..960 | 851..19 | 4165 | 100 | Minus |
CG17489-PE | 537 | RpL5-RE | 65..529 | 851..387 | 2325 | 100 | Minus |
CG17489-PD | 537 | RpL5-RD | 65..529 | 851..387 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 1945 | CG17489-RG | 158..990 | 851..19 | 4165 | 100 | Minus |
RpL5-RH | 3835 | CG17489-RH | 410..1242 | 851..19 | 4165 | 100 | Minus |
RpL5-RB | 1024 | CG17489-RB | 121..953 | 851..19 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22535617..22536056 | 211..650 | 2200 | 100 | Plus |
2L | 23513712 | 2L | 22536113..22536317 | 647..851 | 1025 | 100 | Plus |
2L | 23513712 | 2L | 22534872..22535063 | 19..210 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:45:44 has no hits.
BO12549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:46 Download gff for
BO12549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17489-PC | 128..963 | 15..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:51:39 Download gff for
BO12549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RA | 144..979 | 15..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:28 Download gff for
BO12549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 121..956 | 15..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:28 Download gff for
BO12549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22534868..22535063 | 15..210 | 98 | <- | Plus |
2L | 22535617..22536054 | 211..648 | 100 | <- | Plus |
2L | 22536115..22536317 | 649..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:51:39 Download gff for
BO12549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22427600..22427795 | 15..210 | 98 | <- | Plus |
arm_2L | 22428349..22428786 | 211..648 | 100 | <- | Plus |
arm_2L | 22428847..22429049 | 649..851 | 100 | | Plus |
BO12549.5prime Sequence
804 bp (752 high quality bases) assembled on 2006-05-08
> BO12549.5prime
GAAGTTATCAGTCGACATGGGTTTCGTTAAGGTAGTCAAGAACAAGCAGT
ACTTTAAGAGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGAAAGACC
GATTACTATGCCAGGAAACGCCTAACATTTCAGGACAAGAACAAGTACAA
CACTCCCAAGTACCGTTTGATCGTACGTTTGTCCAACAAGGACATCACAG
TACAGATCGCCTATGCTCGCATCGAGGGTGATCGCGTGGTGTGCGCTGCT
TATTCCCATGAGCTTCCCAAATACGGGATCCAGGTTGGATTGACCAACTA
CGCTGCTGCTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCCTTAACA
AGTTGGGACTGGACTCCCTATATGCAGGATGCACTGAAGTGACTGGTGAG
GAGTTCAACGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCGTTGCTT
CTTGGATGTTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGTTTGGCG
CTATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCTGTGAAA
CGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGATGTGCA
TCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTTCTTTGG
AGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATACATCAAG
TTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGCCCACCA
GGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGTCTTCTG
CCGT
BO12549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17489-PA | 900 | RpL5-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
CG17489-PB | 900 | RpL5-RB | 1..788 | 17..804 | 3940 | 100 | Plus |
CG17489-PC | 963 | RpL5-RC | 66..851 | 19..804 | 3930 | 100 | Plus |
CG17489-PE | 537 | RpL5-RE | 1..529 | 17..545 | 2645 | 100 | Plus |
CG17489-PD | 537 | RpL5-RD | 1..529 | 17..545 | 2645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 1945 | CG17489-RG | 94..881 | 17..804 | 3940 | 100 | Plus |
RpL5-RH | 3835 | CG17489-RH | 346..1133 | 17..804 | 3940 | 100 | Plus |
RpL5-RB | 1024 | CG17489-RB | 57..844 | 17..804 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22535617..22536056 | 721..282 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 22536113..22536379 | 285..19 | 1335 | 100 | Minus |
2L | 23513712 | 2L | 22534981..22535063 | 804..722 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:47:26 has no hits.
BO12549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:47 Download gff for
BO12549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17489-PB | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:00 Download gff for
BO12549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RA | 80..867 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:07 Download gff for
BO12549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 57..844 | 17..804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:07 Download gff for
BO12549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22534981..22535063 | 722..804 | 100 | <- | Minus |
2L | 22535617..22536054 | 284..721 | 100 | <- | Minus |
2L | 22536115..22536381 | 16..283 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:00 Download gff for
BO12549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22427713..22427795 | 722..804 | 100 | <- | Minus |
arm_2L | 22428349..22428786 | 284..721 | 100 | <- | Minus |
arm_2L | 22428847..22429113 | 16..283 | 99 | | Minus |
BO12549.complete Sequence
931 bp assembled on 2006-10-11
GenBank Submission: FJ632482
> BO12549.complete
GAAGTTATCAGTCGACATGGGTTTCGTTAAGGTAGTCAAGAACAAGCAGT
ACTTTAAGAGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGAAAGACC
GATTACTATGCCAGGAAACGCCTAACATTTCAGGACAAGAACAAGTACAA
CACTCCCAAGTACCGTTTGATCGTACGTTTGTCCAACAAGGACATCACAG
TACAGATCGCCTATGCTCGCATCGAGGGTGATCGCGTGGTGTGCGCTGCT
TATTCCCATGAGCTTCCCAAATACGGGATCCAGGTTGGATTGACCAACTA
CGCTGCTGCTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCCTTAACA
AGTTGGGACTGGACTCCCTATATGCAGGATGCACTGAAGTGACTGGTGAG
GAGTTCAACGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCGTTGCTT
CTTGGATGTTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGTTTGGCG
CTATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCTGTGAAA
CGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGATGTGCA
TCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTTCTTTGG
AGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATACATCAAG
TTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGCCCACCA
GGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGTCTTCTG
CCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCACAAACGAGCAACGG
AAGACTAAGATTGCAGCTCATAAGGCAGCATATGTTGCCAAGCTGCAGTC
TGAAACTGAGGCTGCAAGCTTTCTAGACCAT
BO12549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 900 | CG17489-PG | 1..897 | 17..913 | 4485 | 100 | Plus |
RpL5-RH | 900 | CG17489-PH | 1..897 | 17..913 | 4485 | 100 | Plus |
RpL5-RB | 900 | CG17489-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 1945 | CG17489-RG | 94..990 | 17..913 | 4485 | 100 | Plus |
RpL5-RH | 3835 | CG17489-RH | 346..1242 | 17..913 | 4485 | 100 | Plus |
RpL5-RB | 1024 | CG17489-RB | 57..953 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22535617..22536056 | 721..282 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 22536113..22536379 | 285..19 | 1335 | 100 | Minus |
2L | 23513712 | 2L | 22534872..22535063 | 913..722 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:51:37 has no hits.
BO12549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:44 Download gff for
BO12549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:49 Download gff for
BO12549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 94..993 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:33 Download gff for
BO12549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RA | 80..976 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:44 Download gff for
BO12549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 94..993 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:45 Download gff for
BO12549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 57..953 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:45 Download gff for
BO12549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22534870..22535063 | 722..915 | 98 | <- | Minus |
2L | 22535617..22536054 | 284..721 | 100 | <- | Minus |
2L | 22536115..22536380 | 17..283 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:33 Download gff for
BO12549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22427602..22427795 | 722..915 | 98 | <- | Minus |
arm_2L | 22428349..22428786 | 284..721 | 100 | <- | Minus |
arm_2L | 22428847..22429112 | 17..283 | 99 | | Minus |
BO12549.pep Sequence
Translation from 16 to 931
> BO12549.pep
MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYR
LIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYC
TGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGL
ARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIF
GQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRND
PTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKIAAHKAAYVAKLQSETEAA
SFLDH
BO12549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-PG | 299 | CG17489-PG | 1..299 | 1..299 | 1553 | 100 | Plus |
RpL5-PH | 299 | CG17489-PH | 1..299 | 1..299 | 1553 | 100 | Plus |
RpL5-PB | 299 | CG17489-PB | 1..299 | 1..299 | 1553 | 100 | Plus |
RpL5-PA | 299 | CG17489-PA | 1..299 | 1..299 | 1553 | 100 | Plus |