Clone BO12549 Report

Search the DGRC for BO12549

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptRpL5-RA
Protein status:BO12549.pep:
Sequenced Size:931

Clone Sequence Records

BO12549.3prime Sequence

851 bp (847 high quality bases) assembled on 2006-05-08

> BO12549.3prime
ATGGTCTAGAAAGCTTGCAGCCTCAGTTTCAGACTGCAGCTTGGCAACAT
ATGCTGCCTTATGAGCTGCAATCTTAGTCTTCCGTTGCTCGTTTGTGAGT
TTCTTAGCATTCCACCTTTTCTTCGTAACGGCAGAAGACTTCTTAGCGGT
GACCTTGTGTGTAGGGTCGTTACGAATTGCCTGGTGGGCTTTTTTATAGA
TATCCTCAAGATCATCAGCACGAATGCCCAACTTGATGTATCGGCTAAAC
TGCCTTTTGAAGCTCTCCTCATCCTCCTCCTCCAAAGAACGCATATAGTC
TGCAACGTGCTGGCCAAATATATGAGCGCGATGCACATCGGCATTAAAGC
TCTTGGTTTCAGCAGAGTATCCAGGAAAGCGTTTCACAGAGTGAGGTATG
TTTAGACCACCATCAACTGCTCCCTTCATAGCGCCAAACACACGGGCACC
AGTTGTAGTACGAGCGAGTCCAACATCCAAGAAGCAACGGAATGCCCCTG
GGCCGTCATCAACAGGCTCGACGTTGAACTCCTCACCAGTCACTTCAGTG
CATCCTGCATATAGGGAGTCCAGTCCCAACTTGTTAAGGACACGACGGGC
GACCAGCAGGCCTGTGCAGTAAGCAGCAGCGTAGTTGGTCAATCCAACCT
GGATCCCGTATTTGGGAAGCTCATGGGAATAAGCAGCGCACACCACGCGA
TCACCCTCGATGCGAGCATAGGCGATCTGTACTGTGATGTCCTTGTTGGA
CAAACGTACGATCAAACGGTACTTGGGAGTGTTGTACTTGTTCTTGTCCT
GAAATGTTAGGCGTTTCCTGGCATAGTAATCGGTCTTTCCTTCGCGACGC
C

BO12549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17489-PA 900 RpL5-RA 65..897 851..19 4165 100 Minus
CG17489-PB 900 RpL5-RB 65..897 851..19 4165 100 Minus
CG17489-PC 963 RpL5-RC 128..960 851..19 4165 100 Minus
CG17489-PE 537 RpL5-RE 65..529 851..387 2325 100 Minus
CG17489-PD 537 RpL5-RD 65..529 851..387 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 1945 CG17489-RG 158..990 851..19 4165 100 Minus
RpL5-RH 3835 CG17489-RH 410..1242 851..19 4165 100 Minus
RpL5-RB 1024 CG17489-RB 121..953 851..19 4165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22536056 211..650 2200 100 Plus
2L 23513712 2L 22536113..22536317 647..851 1025 100 Plus
2L 23513712 2L 22534872..22535063 19..210 960 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:45:44 has no hits.

BO12549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:46 Download gff for BO12549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17489-PC 128..963 15..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:51:39 Download gff for BO12549.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 144..979 15..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:28 Download gff for BO12549.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 121..956 15..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:28 Download gff for BO12549.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22534868..22535063 15..210 98 <- Plus
2L 22535617..22536054 211..648 100 <- Plus
2L 22536115..22536317 649..851 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:51:39 Download gff for BO12549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427600..22427795 15..210 98 <- Plus
arm_2L 22428349..22428786 211..648 100 <- Plus
arm_2L 22428847..22429049 649..851 100   Plus

BO12549.5prime Sequence

804 bp (752 high quality bases) assembled on 2006-05-08

> BO12549.5prime
GAAGTTATCAGTCGACATGGGTTTCGTTAAGGTAGTCAAGAACAAGCAGT
ACTTTAAGAGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGAAAGACC
GATTACTATGCCAGGAAACGCCTAACATTTCAGGACAAGAACAAGTACAA
CACTCCCAAGTACCGTTTGATCGTACGTTTGTCCAACAAGGACATCACAG
TACAGATCGCCTATGCTCGCATCGAGGGTGATCGCGTGGTGTGCGCTGCT
TATTCCCATGAGCTTCCCAAATACGGGATCCAGGTTGGATTGACCAACTA
CGCTGCTGCTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCCTTAACA
AGTTGGGACTGGACTCCCTATATGCAGGATGCACTGAAGTGACTGGTGAG
GAGTTCAACGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCGTTGCTT
CTTGGATGTTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGTTTGGCG
CTATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCTGTGAAA
CGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGATGTGCA
TCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTTCTTTGG
AGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATACATCAAG
TTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGCCCACCA
GGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGTCTTCTG
CCGT

BO12549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17489-PA 900 RpL5-RA 1..788 17..804 3940 100 Plus
CG17489-PB 900 RpL5-RB 1..788 17..804 3940 100 Plus
CG17489-PC 963 RpL5-RC 66..851 19..804 3930 100 Plus
CG17489-PE 537 RpL5-RE 1..529 17..545 2645 100 Plus
CG17489-PD 537 RpL5-RD 1..529 17..545 2645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 1945 CG17489-RG 94..881 17..804 3940 100 Plus
RpL5-RH 3835 CG17489-RH 346..1133 17..804 3940 100 Plus
RpL5-RB 1024 CG17489-RB 57..844 17..804 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22536056 721..282 2200 100 Minus
2L 23513712 2L 22536113..22536379 285..19 1335 100 Minus
2L 23513712 2L 22534981..22535063 804..722 415 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:47:26 has no hits.

BO12549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:47 Download gff for BO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17489-PB 1..788 17..804 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:00 Download gff for BO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 80..867 17..804 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:07 Download gff for BO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 57..844 17..804 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:07 Download gff for BO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22534981..22535063 722..804 100 <- Minus
2L 22535617..22536054 284..721 100 <- Minus
2L 22536115..22536381 16..283 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:00 Download gff for BO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427713..22427795 722..804 100 <- Minus
arm_2L 22428349..22428786 284..721 100 <- Minus
arm_2L 22428847..22429113 16..283 99   Minus

BO12549.complete Sequence

931 bp assembled on 2006-10-11

GenBank Submission: FJ632482

> BO12549.complete
GAAGTTATCAGTCGACATGGGTTTCGTTAAGGTAGTCAAGAACAAGCAGT
ACTTTAAGAGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGAAAGACC
GATTACTATGCCAGGAAACGCCTAACATTTCAGGACAAGAACAAGTACAA
CACTCCCAAGTACCGTTTGATCGTACGTTTGTCCAACAAGGACATCACAG
TACAGATCGCCTATGCTCGCATCGAGGGTGATCGCGTGGTGTGCGCTGCT
TATTCCCATGAGCTTCCCAAATACGGGATCCAGGTTGGATTGACCAACTA
CGCTGCTGCTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCCTTAACA
AGTTGGGACTGGACTCCCTATATGCAGGATGCACTGAAGTGACTGGTGAG
GAGTTCAACGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCGTTGCTT
CTTGGATGTTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGTTTGGCG
CTATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCTGTGAAA
CGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGATGTGCA
TCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTTCTTTGG
AGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATACATCAAG
TTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGCCCACCA
GGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGTCTTCTG
CCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCACAAACGAGCAACGG
AAGACTAAGATTGCAGCTCATAAGGCAGCATATGTTGCCAAGCTGCAGTC
TGAAACTGAGGCTGCAAGCTTTCTAGACCAT

BO12549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 900 CG17489-PG 1..897 17..913 4485 100 Plus
RpL5-RH 900 CG17489-PH 1..897 17..913 4485 100 Plus
RpL5-RB 900 CG17489-PB 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 1945 CG17489-RG 94..990 17..913 4485 100 Plus
RpL5-RH 3835 CG17489-RH 346..1242 17..913 4485 100 Plus
RpL5-RB 1024 CG17489-RB 57..953 17..913 4485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22536056 721..282 2200 100 Minus
2L 23513712 2L 22536113..22536379 285..19 1335 100 Minus
2L 23513712 2L 22534872..22535063 913..722 960 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:51:37 has no hits.

BO12549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:44 Download gff for BO12549.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 1..900 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:49 Download gff for BO12549.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 94..993 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:33 Download gff for BO12549.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 80..976 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:44 Download gff for BO12549.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 94..993 17..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:45 Download gff for BO12549.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 57..953 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:45 Download gff for BO12549.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22534870..22535063 722..915 98 <- Minus
2L 22535617..22536054 284..721 100 <- Minus
2L 22536115..22536380 17..283 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:33 Download gff for BO12549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427602..22427795 722..915 98 <- Minus
arm_2L 22428349..22428786 284..721 100 <- Minus
arm_2L 22428847..22429112 17..283 99   Minus

BO12549.pep Sequence

Translation from 16 to 931

> BO12549.pep
MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYR
LIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYC
TGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGL
ARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIF
GQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRND
PTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKIAAHKAAYVAKLQSETEAA
SFLDH

BO12549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-PG 299 CG17489-PG 1..299 1..299 1553 100 Plus
RpL5-PH 299 CG17489-PH 1..299 1..299 1553 100 Plus
RpL5-PB 299 CG17489-PB 1..299 1..299 1553 100 Plus
RpL5-PA 299 CG17489-PA 1..299 1..299 1553 100 Plus