Clone Sequence Records
BO12550.3prime Sequence
791 bp (755 high quality bases) assembled on 2006-05-08
> BO12550.3prime
ATGGTCTAGAAAGCTTGCGAACTTCGAGGACTTGGCCAGGTTGAGTTCCT
CGGTCAGCATGCGACCGAAATCGGCGTGCACCTGGGTGAAGTTCTTGACG
GCCCGCTCCTGCAAGAACTGGCTGGCGTTGCTCAAATGGCCGGCAATGTT
CTGCACCAGACGCTTCTTGGCGCACTTGTCGAGCACATGCACCCAGAAGT
CGGTGACCTGGCCGAAGTTGTCCTCGGTGTCGCCGCTGCTGTAGCGGTAG
ACATCTCCAGTCACCGGACAGCAGGAGGACAAGGCCCTGGCCCTGGGGCA
TTCCTGGGGACCGTTGAACGAGTTGGGGAAGTAGTTGGGGGCACCATCCT
GGTTGTCCGTCACATTCATGGCTCCATCCCGCTGGAAGTTCTCAATCTTC
ACCTTGTACGGGCAGTTCACCGGGATCTGCAAGTAGTTCGGTCCCAGGCG
ATGGCGATGGGTGTCCGAGTAGGAGAACAGACGACCATGCAGCATCTTGT
CCGGAGAGGGCTCAACGCCGGGCACCAGGTGAGCGGGACTGAAGGCGATC
TGCTCCACCTCAGCAAAGTAGTTCTTGGGATTGCGATCCAGCACCATTTT
GCCCACAGGAATCAGAGGGTACTCCTTCTGCGACCAGACCTTGGTGACAT
CGAAGGGGTTGTACTTGAACTTCTTGGCCTGCTCGTAGGTCATGACCTGA
ATGTACATCGTCCAACTGGGGAACTTGCAGGTCTTGATCCTGTTGTACAG
ATCGCGAATGCTGTAATCCGGATCAGTGCTAGCCAACTGAT
BO12550.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6871-PA | 1521 | Cat-RA | 746..1518 | 791..19 | 3865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cat-RA | 1993 | CG6871-RA | 928..1700 | 791..19 | 3865 | 100 | Minus |
CG9314-RC | 1893 | CG9314-RC | 907..1595 | 753..65 | 865 | 75.6 | Minus |
CG9314-RA | 1806 | CG9314-RA | 907..1595 | 753..65 | 865 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18827354..18827895 | 560..19 | 2710 | 100 | Minus |
3L | 28110227 | 3L | 18827026..18827260 | 791..557 | 1175 | 100 | Minus |
2L | 23513712 | 2L | 8706633..8707229 | 661..65 | 750 | 75 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:48:46 has no hits.
BO12550.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:57 Download gff for
BO12550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6871-PA | 746..1521 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:53 Download gff for
BO12550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6871-PA | 746..1521 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:48:18 Download gff for
BO12550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 928..1706 | 12..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:21 Download gff for
BO12550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 928..1706 | 12..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:21 Download gff for
BO12550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18827026..18827258 | 559..791 | 100 | -> | Minus |
3L | 18827356..18827901 | 12..558 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:48:18 Download gff for
BO12550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18820126..18820358 | 559..791 | 100 | -> | Minus |
arm_3L | 18820456..18821001 | 12..558 | 99 | | Minus |
BO12550.5prime Sequence
783 bp (726 high quality bases) assembled on 2006-05-08
> BO12550.5prime
GAAGTTATCAGTCGACATGGCTGGACGCGATGCGGCTTCCAATCAGTTGA
TTGACTACAAAAACTCCCAAACGGTTTCTCCTGGTGCCATTACCACCGGC
AATGGAGCACCCATTGGAATCAAGGATGCCTCCCAGACGGTTGGTCCGCG
AGGACCTATCCTGCTGCAGGATGTGAACTTCCTGGATGAGATGTCGCACT
TCGACAGGGAGCGGATTCCAGAGCGTGTCGTGCACGCCAAGGGAGCTGGT
GCTTTTGGTTACTTTGAGGTGACCCATGACATCACCCAGTATTGTGCCGC
CAAGATTTTCGACAAGGTCAAGAAGCGCACTCCACTGGCCGTGCGATTCT
CCACCGTGGGTGGTGAGAGCGGATCTGCGGACACCGCCCGCGATCCTCGA
GGATTTGCCGTCAAGTTCTACACTGAGGATGGCGTCTGGGATTTGGTTGG
CAACAACACGCCGGTCTTCTTCATTCGCGACCCGATCCTATTCCCCAGCT
TCATTCACACCCAGAAGCGCAACCCGCAGACGCATCTGAAGGATCCGGAC
ATGTTCTGGGACTTCCTCACCCTGCGACCGGAGTCCGCTCACCAGGTGTG
CATCCTGTTCAGCGATCGCGGCACCCCCGACGGTTACTGCCACATGAACG
GCTATGGCTCGCACACCTTCAAATTGATCAACGCCAAGGGCGAGCCCATC
TATGCCAAGTTCCACTTCAAGACGGACCAGGGCATCAAGAATTTGGACGT
GAAGACCGCCGATCAGTTGGCTAGCACTGATCC
BO12550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6871-PA | 1521 | Cat-RA | 1..767 | 17..783 | 3810 | 99.8 | Plus |
CG9314-PA | 1521 | CG9314-RA | 693..725 | 709..741 | 165 | 100 | Plus |
CG9314-PA | 1521 | CG9314-RA | 499..566 | 515..582 | 165 | 89.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cat-RA | 1993 | CG6871-RA | 183..949 | 17..783 | 3820 | 99.9 | Plus |
CG9314-RC | 1893 | CG9314-RC | 227..856 | 120..749 | 555 | 73.5 | Plus |
CG9314-RA | 1806 | CG9314-RA | 227..856 | 120..749 | 555 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18826337..18827047 | 73..783 | 3540 | 99.9 | Plus |
2L | 23513712 | 2L | 8705798..8706427 | 120..749 | 555 | 72.5 | Plus |
3L | 28110227 | 3L | 18822786..18822844 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:59:07 has no hits.
BO12550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:58 Download gff for
BO12550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6871-PA | 1..767 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:55 Download gff for
BO12550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6871-PA | 1..767 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:40 Download gff for
BO12550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 172..949 | 5..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:35 Download gff for
BO12550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 172..949 | 5..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:35 Download gff for
BO12550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18822775..18822842 | 5..73 | 92 | -> | Plus |
3L | 18826338..18827047 | 74..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:40 Download gff for
BO12550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18815875..18815942 | 5..73 | 92 | -> | Plus |
arm_3L | 18819438..18820147 | 74..783 | 99 | | Plus |
BO12550.complete Sequence
1552 bp assembled on 2007-10-26
GenBank Submission: FJ638702
> BO12550.complete
GAAGTTATCAGTCGACATGGCTGGACGCGATGCGGCTTCCAATCAGTTGA
TTGACTACAAAAACTCCCAAACGGTTTCTCCTGGTGCCATTACCACCGGC
AATGGAGCACCCATTGGAATCAAGGATGCCTCCCAGACGGTTGGTCCGCG
AGGACCTATCCTGCTGCAGGATGTGAACTTCCTGGATGAGATGTCGCACT
TCGACAGGGAGCGGATTCCAGAGCGTGTCGTGCACGCCAAGGGAGCTGGT
GCTTTTGGTTACTTTGAGGTGACCCATGACATCACCCAGTATTGTGCCGC
CAAGATTTTCGACAAGGTCAAGAAGCGCACTCCACTGGCCGTGCGATTCT
CCACCGTGGGTGGTGAGAGCGGATCTGCGGACACCGCCCGCGATCCTCGA
GGATTTGCCGTCAAGTTCTACACTGAGGATGGCGTCTGGGATTTGGTTGG
CAACAACACGCCGGTCTTCTTCATTCGCGACCCGATCCTATTCCCCAGCT
TCATTCACACCCAGAAGCGCAACCCGCAGACGCATCTGAAGGATCCGGAC
ATGTTCTGGGACTTCCTCACCCTGCGACCGGAGTCCGCTCACCAGGTGTG
CATCCTGTTCAGCGATCGCGGCACCCCCGACGGTTACTGCCACATGAACG
GCTATGGCTCGCACACCTTCAAATTGATCAACGCCAAGGGCGAGCCCATC
TATGCCAAGTTCCACTTCAAGACGGACCAGGGCATCAAGAATTTGGACGT
GAAGACCGCCGATCAGTTGGCTAGCACTGATCCGGATTACAGCATTCGCG
ATCTGTACAACAGGATCAAGACCTGCAAGTTCCCCAGTTGGACGATGTAC
ATTCAGGTCATGACCTACGAGCAGGCCAAGAAGTTCAAGTACAACCCCTT
CGATGTCACCAAGGTCTGGTCGCAGAAGGAGTACCCTCTGATTCCTGTGG
GCAAAATGGTGCTGGATCGCAATCCCAAGAACTACTTTGCTGAGGTGGAG
CAGATCGCCTTCAGTCCCGCTCACCTGGTGCCCGGCGTTGAGCCCTCTCC
GGACAAGATGCTGCATGGTCGTCTGTTCTCCTACTCGGACACCCATCGCC
ATCGCCTGGGACCGAACTACTTGCAGATCCCGGTGAACTGCCCGTACAAG
GTGAAGATTGAGAACTTCCAGCGGGATGGAGCCATGAATGTGACGGACAA
CCAGGATGGTGCCCCCAACTACTTCCCCAACTCGTTCAACGGTCCCCAGG
AATGCCCCAGGGCCAGGGCCTTGTCCTCCTGCTGTCCGGTGACTGGAGAT
GTCTACCGCTACAGCAGCGGCGACACCGAGGACAACTTCGGCCAGGTCAC
CGACTTCTGGGTGCATGTGCTCGACAAGTGCGCCAAGAAGCGTCTGGTGC
AGAACATTGCCGGCCATTTGAGCAACGCCAGCCAGTTCTTGCAGGAGCGG
GCCGTCAAGAACTTCACCCAGGTGCACGCCGATTTCGGTCGCATGCTGAC
CGAGGAACTCAACCTGGCCAAGTCCTCGAAGTTCGCAAGCTTTCTAGACC
AT
BO12550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cat-RA | 1521 | CG6871-PA | 1..1518 | 17..1534 | 7575 | 99.9 | Plus |
CG9314-RC | 1521 | CG9314-PC | 104..1472 | 120..1488 | 1250 | 72.8 | Plus |
CG9314-RA | 1521 | CG9314-PA | 104..1472 | 120..1488 | 1250 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cat-RA | 1993 | CG6871-RA | 183..1700 | 17..1534 | 7575 | 99.9 | Plus |
CG9314-RC | 1893 | CG9314-RC | 227..1595 | 120..1488 | 1250 | 72.8 | Plus |
CG9314-RA | 1806 | CG9314-RA | 227..1595 | 120..1488 | 1250 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18826337..18827260 | 73..996 | 4605 | 99.9 | Plus |
3L | 28110227 | 3L | 18827354..18827895 | 993..1534 | 2710 | 100 | Plus |
2L | 23513712 | 2L | 8706633..8707229 | 892..1488 | 750 | 75 | Plus |
2L | 23513712 | 2L | 8705798..8706427 | 120..749 | 555 | 72.5 | Plus |
3L | 28110227 | 3L | 18822786..18822844 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:42:29 has no hits.
BO12550.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:38 Download gff for
BO12550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 1..1521 | 17..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:49 Download gff for
BO12550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 170..1704 | 5..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:05 Download gff for
BO12550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 183..1700 | 17..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:05 Download gff for
BO12550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 181..1698 | 17..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:24 Download gff for
BO12550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cat-RA | 183..1700 | 17..1536 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:24 Download gff for
BO12550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18822786..18822842 | 17..73 | 100 | -> | Plus |
3L | 18826338..18827258 | 74..994 | 99 | -> | Plus |
3L | 18827356..18827895 | 995..1536 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:05 Download gff for
BO12550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18815886..18815942 | 17..73 | 100 | -> | Plus |
arm_3L | 18819438..18820358 | 74..994 | 99 | -> | Plus |
arm_3L | 18820456..18820995 | 995..1536 | 99 | | Plus |
BO12550.pep Sequence
Translation from 16 to 1552
> BO12550.pep
MAGRDAASNQLIDYKNSQTVSPGAITTGNGAPIGIKDASQTVGPRGPILL
QDVNFLDEMSHFDRERIPERVVHAKGAGAFGYFEVTHDITQYCAAKIFDK
VKKRTPLAVRFSTVGGESGSADTARDPRGFAVKFYTEDGVWDLVGNNTPV
FFIRDPILFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESAHQVCILFSD
RGTPDGYCHMNGYGSHTFKLINAKGEPIYAKFHFKTDQGIKNLDVKTADQ
LASTDPDYSIRDLYNRIKTCKFPSWTMYIQVMTYEQAKKFKYNPFDVTKV
WSQKEYPLIPVGKMVLDRNPKNYFAEVEQIAFSPAHLVPGVEPSPDKMLH
GRLFSYSDTHRHRLGPNYLQIPVNCPYKVKIENFQRDGAMNVTDNQDGAP
NYFPNSFNGPQECPRARALSSCCPVTGDVYRYSSGDTEDNFGQVTDFWVH
VLDKCAKKRLVQNIAGHLSNASQFLQERAVKNFTQVHADFGRMLTEELNL
AKSSKFASFLDH
BO12550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cat-PA | 506 | CG6871-PA | 1..506 | 1..506 | 2731 | 100 | Plus |
CG9314-PC | 506 | CG9314-PC | 1..506 | 1..506 | 2025 | 70.4 | Plus |
CG9314-PA | 506 | CG9314-PA | 1..506 | 1..506 | 2025 | 70.4 | Plus |