Clone BO12550 Report

Search the DGRC for BO12550

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCat-RA
Protein status:BO12550.pep: validated full length
Sequenced Size:1552

Clone Sequence Records

BO12550.3prime Sequence

791 bp (755 high quality bases) assembled on 2006-05-08

> BO12550.3prime
ATGGTCTAGAAAGCTTGCGAACTTCGAGGACTTGGCCAGGTTGAGTTCCT
CGGTCAGCATGCGACCGAAATCGGCGTGCACCTGGGTGAAGTTCTTGACG
GCCCGCTCCTGCAAGAACTGGCTGGCGTTGCTCAAATGGCCGGCAATGTT
CTGCACCAGACGCTTCTTGGCGCACTTGTCGAGCACATGCACCCAGAAGT
CGGTGACCTGGCCGAAGTTGTCCTCGGTGTCGCCGCTGCTGTAGCGGTAG
ACATCTCCAGTCACCGGACAGCAGGAGGACAAGGCCCTGGCCCTGGGGCA
TTCCTGGGGACCGTTGAACGAGTTGGGGAAGTAGTTGGGGGCACCATCCT
GGTTGTCCGTCACATTCATGGCTCCATCCCGCTGGAAGTTCTCAATCTTC
ACCTTGTACGGGCAGTTCACCGGGATCTGCAAGTAGTTCGGTCCCAGGCG
ATGGCGATGGGTGTCCGAGTAGGAGAACAGACGACCATGCAGCATCTTGT
CCGGAGAGGGCTCAACGCCGGGCACCAGGTGAGCGGGACTGAAGGCGATC
TGCTCCACCTCAGCAAAGTAGTTCTTGGGATTGCGATCCAGCACCATTTT
GCCCACAGGAATCAGAGGGTACTCCTTCTGCGACCAGACCTTGGTGACAT
CGAAGGGGTTGTACTTGAACTTCTTGGCCTGCTCGTAGGTCATGACCTGA
ATGTACATCGTCCAACTGGGGAACTTGCAGGTCTTGATCCTGTTGTACAG
ATCGCGAATGCTGTAATCCGGATCAGTGCTAGCCAACTGAT

BO12550.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6871-PA 1521 Cat-RA 746..1518 791..19 3865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cat-RA 1993 CG6871-RA 928..1700 791..19 3865 100 Minus
CG9314-RC 1893 CG9314-RC 907..1595 753..65 865 75.6 Minus
CG9314-RA 1806 CG9314-RA 907..1595 753..65 865 75.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18827354..18827895 560..19 2710 100 Minus
3L 28110227 3L 18827026..18827260 791..557 1175 100 Minus
2L 23513712 2L 8706633..8707229 661..65 750 75 Minus
Blast to na_te.dros performed on 2015-02-12 18:48:46 has no hits.

BO12550.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:57 Download gff for BO12550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6871-PA 746..1521 15..791 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:53 Download gff for BO12550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6871-PA 746..1521 15..791 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:48:18 Download gff for BO12550.3prime
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 928..1706 12..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:21 Download gff for BO12550.3prime
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 928..1706 12..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:21 Download gff for BO12550.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18827026..18827258 559..791 100 -> Minus
3L 18827356..18827901 12..558 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:48:18 Download gff for BO12550.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18820126..18820358 559..791 100 -> Minus
arm_3L 18820456..18821001 12..558 99   Minus

BO12550.5prime Sequence

783 bp (726 high quality bases) assembled on 2006-05-08

> BO12550.5prime
GAAGTTATCAGTCGACATGGCTGGACGCGATGCGGCTTCCAATCAGTTGA
TTGACTACAAAAACTCCCAAACGGTTTCTCCTGGTGCCATTACCACCGGC
AATGGAGCACCCATTGGAATCAAGGATGCCTCCCAGACGGTTGGTCCGCG
AGGACCTATCCTGCTGCAGGATGTGAACTTCCTGGATGAGATGTCGCACT
TCGACAGGGAGCGGATTCCAGAGCGTGTCGTGCACGCCAAGGGAGCTGGT
GCTTTTGGTTACTTTGAGGTGACCCATGACATCACCCAGTATTGTGCCGC
CAAGATTTTCGACAAGGTCAAGAAGCGCACTCCACTGGCCGTGCGATTCT
CCACCGTGGGTGGTGAGAGCGGATCTGCGGACACCGCCCGCGATCCTCGA
GGATTTGCCGTCAAGTTCTACACTGAGGATGGCGTCTGGGATTTGGTTGG
CAACAACACGCCGGTCTTCTTCATTCGCGACCCGATCCTATTCCCCAGCT
TCATTCACACCCAGAAGCGCAACCCGCAGACGCATCTGAAGGATCCGGAC
ATGTTCTGGGACTTCCTCACCCTGCGACCGGAGTCCGCTCACCAGGTGTG
CATCCTGTTCAGCGATCGCGGCACCCCCGACGGTTACTGCCACATGAACG
GCTATGGCTCGCACACCTTCAAATTGATCAACGCCAAGGGCGAGCCCATC
TATGCCAAGTTCCACTTCAAGACGGACCAGGGCATCAAGAATTTGGACGT
GAAGACCGCCGATCAGTTGGCTAGCACTGATCC

BO12550.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6871-PA 1521 Cat-RA 1..767 17..783 3810 99.8 Plus
CG9314-PA 1521 CG9314-RA 693..725 709..741 165 100 Plus
CG9314-PA 1521 CG9314-RA 499..566 515..582 165 89.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cat-RA 1993 CG6871-RA 183..949 17..783 3820 99.9 Plus
CG9314-RC 1893 CG9314-RC 227..856 120..749 555 73.5 Plus
CG9314-RA 1806 CG9314-RA 227..856 120..749 555 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18826337..18827047 73..783 3540 99.9 Plus
2L 23513712 2L 8705798..8706427 120..749 555 72.5 Plus
3L 28110227 3L 18822786..18822844 17..75 295 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:59:07 has no hits.

BO12550.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:58 Download gff for BO12550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6871-PA 1..767 17..783 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:55 Download gff for BO12550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6871-PA 1..767 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:40 Download gff for BO12550.5prime
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 172..949 5..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:35 Download gff for BO12550.5prime
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 172..949 5..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:35 Download gff for BO12550.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18822775..18822842 5..73 92 -> Plus
3L 18826338..18827047 74..783 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:40 Download gff for BO12550.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18815875..18815942 5..73 92 -> Plus
arm_3L 18819438..18820147 74..783 99   Plus

BO12550.complete Sequence

1552 bp assembled on 2007-10-26

GenBank Submission: FJ638702

> BO12550.complete
GAAGTTATCAGTCGACATGGCTGGACGCGATGCGGCTTCCAATCAGTTGA
TTGACTACAAAAACTCCCAAACGGTTTCTCCTGGTGCCATTACCACCGGC
AATGGAGCACCCATTGGAATCAAGGATGCCTCCCAGACGGTTGGTCCGCG
AGGACCTATCCTGCTGCAGGATGTGAACTTCCTGGATGAGATGTCGCACT
TCGACAGGGAGCGGATTCCAGAGCGTGTCGTGCACGCCAAGGGAGCTGGT
GCTTTTGGTTACTTTGAGGTGACCCATGACATCACCCAGTATTGTGCCGC
CAAGATTTTCGACAAGGTCAAGAAGCGCACTCCACTGGCCGTGCGATTCT
CCACCGTGGGTGGTGAGAGCGGATCTGCGGACACCGCCCGCGATCCTCGA
GGATTTGCCGTCAAGTTCTACACTGAGGATGGCGTCTGGGATTTGGTTGG
CAACAACACGCCGGTCTTCTTCATTCGCGACCCGATCCTATTCCCCAGCT
TCATTCACACCCAGAAGCGCAACCCGCAGACGCATCTGAAGGATCCGGAC
ATGTTCTGGGACTTCCTCACCCTGCGACCGGAGTCCGCTCACCAGGTGTG
CATCCTGTTCAGCGATCGCGGCACCCCCGACGGTTACTGCCACATGAACG
GCTATGGCTCGCACACCTTCAAATTGATCAACGCCAAGGGCGAGCCCATC
TATGCCAAGTTCCACTTCAAGACGGACCAGGGCATCAAGAATTTGGACGT
GAAGACCGCCGATCAGTTGGCTAGCACTGATCCGGATTACAGCATTCGCG
ATCTGTACAACAGGATCAAGACCTGCAAGTTCCCCAGTTGGACGATGTAC
ATTCAGGTCATGACCTACGAGCAGGCCAAGAAGTTCAAGTACAACCCCTT
CGATGTCACCAAGGTCTGGTCGCAGAAGGAGTACCCTCTGATTCCTGTGG
GCAAAATGGTGCTGGATCGCAATCCCAAGAACTACTTTGCTGAGGTGGAG
CAGATCGCCTTCAGTCCCGCTCACCTGGTGCCCGGCGTTGAGCCCTCTCC
GGACAAGATGCTGCATGGTCGTCTGTTCTCCTACTCGGACACCCATCGCC
ATCGCCTGGGACCGAACTACTTGCAGATCCCGGTGAACTGCCCGTACAAG
GTGAAGATTGAGAACTTCCAGCGGGATGGAGCCATGAATGTGACGGACAA
CCAGGATGGTGCCCCCAACTACTTCCCCAACTCGTTCAACGGTCCCCAGG
AATGCCCCAGGGCCAGGGCCTTGTCCTCCTGCTGTCCGGTGACTGGAGAT
GTCTACCGCTACAGCAGCGGCGACACCGAGGACAACTTCGGCCAGGTCAC
CGACTTCTGGGTGCATGTGCTCGACAAGTGCGCCAAGAAGCGTCTGGTGC
AGAACATTGCCGGCCATTTGAGCAACGCCAGCCAGTTCTTGCAGGAGCGG
GCCGTCAAGAACTTCACCCAGGTGCACGCCGATTTCGGTCGCATGCTGAC
CGAGGAACTCAACCTGGCCAAGTCCTCGAAGTTCGCAAGCTTTCTAGACC
AT

BO12550.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cat-RA 1521 CG6871-PA 1..1518 17..1534 7575 99.9 Plus
CG9314-RC 1521 CG9314-PC 104..1472 120..1488 1250 72.8 Plus
CG9314-RA 1521 CG9314-PA 104..1472 120..1488 1250 72.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cat-RA 1993 CG6871-RA 183..1700 17..1534 7575 99.9 Plus
CG9314-RC 1893 CG9314-RC 227..1595 120..1488 1250 72.8 Plus
CG9314-RA 1806 CG9314-RA 227..1595 120..1488 1250 72.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18826337..18827260 73..996 4605 99.9 Plus
3L 28110227 3L 18827354..18827895 993..1534 2710 100 Plus
2L 23513712 2L 8706633..8707229 892..1488 750 75 Plus
2L 23513712 2L 8705798..8706427 120..749 555 72.5 Plus
3L 28110227 3L 18822786..18822844 17..75 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:42:29 has no hits.

BO12550.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:38 Download gff for BO12550.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 1..1521 17..1538 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:49 Download gff for BO12550.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 170..1704 5..1541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:05 Download gff for BO12550.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 183..1700 17..1536 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:05 Download gff for BO12550.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 181..1698 17..1536 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:24 Download gff for BO12550.complete
Subject Subject Range Query Range Percent Splice Strand
Cat-RA 183..1700 17..1536 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:24 Download gff for BO12550.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18822786..18822842 17..73 100 -> Plus
3L 18826338..18827258 74..994 99 -> Plus
3L 18827356..18827895 995..1536 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:05 Download gff for BO12550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18815886..18815942 17..73 100 -> Plus
arm_3L 18819438..18820358 74..994 99 -> Plus
arm_3L 18820456..18820995 995..1536 99   Plus

BO12550.pep Sequence

Translation from 16 to 1552

> BO12550.pep
MAGRDAASNQLIDYKNSQTVSPGAITTGNGAPIGIKDASQTVGPRGPILL
QDVNFLDEMSHFDRERIPERVVHAKGAGAFGYFEVTHDITQYCAAKIFDK
VKKRTPLAVRFSTVGGESGSADTARDPRGFAVKFYTEDGVWDLVGNNTPV
FFIRDPILFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESAHQVCILFSD
RGTPDGYCHMNGYGSHTFKLINAKGEPIYAKFHFKTDQGIKNLDVKTADQ
LASTDPDYSIRDLYNRIKTCKFPSWTMYIQVMTYEQAKKFKYNPFDVTKV
WSQKEYPLIPVGKMVLDRNPKNYFAEVEQIAFSPAHLVPGVEPSPDKMLH
GRLFSYSDTHRHRLGPNYLQIPVNCPYKVKIENFQRDGAMNVTDNQDGAP
NYFPNSFNGPQECPRARALSSCCPVTGDVYRYSSGDTEDNFGQVTDFWVH
VLDKCAKKRLVQNIAGHLSNASQFLQERAVKNFTQVHADFGRMLTEELNL
AKSSKFASFLDH

BO12550.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cat-PA 506 CG6871-PA 1..506 1..506 2731 100 Plus
CG9314-PC 506 CG9314-PC 1..506 1..506 2025 70.4 Plus
CG9314-PA 506 CG9314-PA 1..506 1..506 2025 70.4 Plus