Clone Sequence Records
BO12551.3prime Sequence
768 bp (766 high quality bases) assembled on 2006-05-08
> BO12551.3prime
ATGGTCTAGAAAGCTTGCGTGTATAAACGAGCACTCAGCATCATCGAGAG
GACATCCCAGCGGATGATGAAGCTTGAAAAAGCAGCTACGTTTCTTGATG
GTCAAATGGGATTTGGGGAGAGTAGCCGTTGGTTTAGGGGTTCTTATTCC
TATGAGATCACCACCGCAGAATTCGAAAACTTCGTGTTTATTGCGCAGCA
ATGTTTTGATGCCGCCGCACTCGGATTTAATGCCACTCAGCTCCTCCTTG
GTGAGAGCCTGGGCAATCTCTCTCATGGGCAGACGACCAGACCATTTATC
TTCGTTAGAGTCCAGAATCAGTTTGAAGATCTTAAACACTAGACCATCAA
TTATGGTCTTATCCACCTGCGTGCAATTTCGAACGCTCTCCTCCTTCTCG
CGCAGCTTAATTTTGGCATCTCCGGTCTTATACTTTCTTAGCTCTTCTTG
GACAAAGTACTCCAGATCTTCAATAGCCTTTGAGGCTTTTCTCTTAATTC
CCAGCAGAGCCAATCGCTTGGTGCTTGGTATTTTTAGACGGTCTTGTAGG
ATCTCATAGCCACATTCATGAGAGACCTGAGTGACGTATTGAAAGAAATC
CTGGTAGGCACTTATCTTCGTATTCCGCCTGCGAAACTTGGCTCCCGACA
GTTCAAAGGGACAGCAGGGCAGTAGGAAATAGTTAATGTTCAAACGACCA
GCCAAAACCGGTAGCCAAGGAGACAACTCGTCCGAATGGTTACCAATCAA
CCAATCCACACCCGGAAA
BO12551.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-PA | 1410 | CG9386-RA | 658..1407 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-RA | 1652 | CG9386-RA | 833..1582 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9553766..9554515 | 19..768 | 3750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:46:32 has no hits.
BO12551.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:38:59 Download gff for
BO12551.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-PA | 661..1410 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:57 Download gff for
BO12551.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-PA | 661..1410 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:43:02 Download gff for
BO12551.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 836..1592 | 8..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:32 Download gff for
BO12551.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 836..1592 | 8..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:32 Download gff for
BO12551.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9553756..9554512 | 8..765 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:43:02 Download gff for
BO12551.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5379478..5380234 | 8..765 | 99 | | Plus |
BO12551.5prime Sequence
809 bp (771 high quality bases) assembled on 2006-05-08
> BO12551.5prime
GAAGTTATCAGTCGACATGTCTCTAAAAGAGGATCCAAGCCAGCGCACGT
GCACAGGATTTACGATCGGATTCAAACTGCTGTCCAAGAAACTGGCGGAA
AACATCCTAGGCACCGGAATTGTGGATTTTGAGAATTGTCTCTATGAGTG
CCAATTTGCCAGCGATAGCATTGAAGGCTTTTCCGTGGGCCTCCTTGGAG
GAGAGTTTAAACTGAAGTCCAAATCGAACACCAACTGGTTGGAATTTGTG
CTCAGACCAAAGCTCTTAAGCTGGTCTCAGTCCAAGCAGGATGAAGCAAA
GGTGAAGTCACTAGGTTTGGTTAATGTGGAAAAGTACAATGATCTGTACA
AGGAGTTGAAACAGAGGCATTCACAACGCCTGCTGGAACACTGGAAGACC
GCACAGGAGTCCACGGATCCGCTCAAGTTCATTTACGAGGATTTGGCTAT
CGCTGCTTATCTTATAGTTTTGTGGAGTCAAACACAATCGGAGCCCACTG
CCTTCGCTGATTTGGGTTGTGGAAACGGTCTGTTAGTTCATGTCCTCAAC
GCCGAGGGCTACAAAGGGTATGGCTACGATATAAGAAAGCGAAAGCTATG
GTCCCTCTATCCACCGGATACCCAAAGGAGCCTCATTGAAAAGGCCGTGG
AGCCCAACAGCTTCCGCTTGGATTTTCCGGGTGTGGATTGGTTGATTGGT
AACCATTCGGACGAGTTGTCTCCTTGGCTACCGGTTTTGGCTGGCCGTTT
GAACATTAACTATTTCCTACTGCCCTGCTGTCCCCTTGAACTGTCGGGAG
CCAAGTTTC
BO12551.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-PA | 1410 | CG9386-RA | 1..793 | 17..809 | 3915 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-RA | 1652 | CG9386-RA | 176..968 | 17..809 | 3935 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9554380..9555064 | 809..125 | 3395 | 99.7 | Minus |
| 3R | 32079331 | 3R | 9555125..9555233 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 13:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\ISBu3 | 993 | Dbuz\ISBu3 ISBU3 993bp | 178..251 | 83..156 | 109 | 60.8 | Plus |
BO12551.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:00 Download gff for
BO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-PA | 1..793 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:59 Download gff for
BO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-PA | 1..793 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:16:29 Download gff for
BO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 168..968 | 10..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:01 Download gff for
BO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 168..968 | 10..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:01 Download gff for
BO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9554380..9555063 | 126..809 | 99 | <- | Minus |
| 3R | 9555125..9555241 | 10..125 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:16:29 Download gff for
BO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5380102..5380785 | 126..809 | 99 | <- | Minus |
| arm_3R | 5380847..5380963 | 10..125 | 97 | | Minus |
BO12551.complete Sequence
1441 bp assembled on 2006-10-11
GenBank Submission: FJ632483
> BO12551.complete
GAAGTTATCAGTCGACATGTCTCTAAAAGAGGATCCAAGCCAGCGCACGT
GCACAGGATTTACGATCGGATTCAAACTGCTGTCCAAGAAACTGGCGGAA
AACATCCTAGGCACCGGAATTGTGGATTTTGAGAATTGTCTCTATGAGTG
CCAATTTGCCAGCGATAGCATTGAAGGCTTTTCCGTGGGCCTCCTTGGAG
GAGAGTTTAAACTGAAGTCCAAATCGAACACCAACTGGTTGGAATTTGTG
CTCAGACCAAAGCTCTTAAGCTGGTCTCAGTCCAAGCAGGATGAAGCAAA
GGTGAAGTCACTAGGTTTGGTTAATGTGGAAAAGTACAATGATCTGTACA
AGGAGTTGAAACAGAGGCATTCACAACGCCTGCTGGAACACTGGAAGACC
GCACAGGAGTCCACGGATCCGCTCAAGTTCATTTACGAGGATTTGGCTAT
CGCTGCTTATCTTATAGTTTTGTGGAGTCAAACACAATCGGAGCCCACTG
CCTTCGCTGATTTGGGTTGTGGAAACGGTCTGTTAGTTCATGTCCTCAAC
GCCGAGGGCTACAAAGGGTATGGCTACGATATAAGAAAGCGAAAGCTATG
GTCCCTCTATCCACCGGATACCCAAAGGAGCCTCATTGAAAAGGCCGTGG
AGCCCAACAGCTTCCGCTTGGATTTTCCGGGTGTGGATTGGTTGATTGGT
AACCATTCGGACGAGTTGTCTCCTTGGCTACCGGTTTTGGCTGGTCGTTT
GAACATTAACTATTTCCTACTGCCCTGCTGTCCCTTTGAACTGTCGGGAG
CCAAGTTTCGCAGGCGGAATACGAAGATAAGTGCCTACCAGGATTTCTTT
CAATACGTCACTCAGGTCTCTCATGAATGTGGCTATGAGATCCTACAAGA
CCGTCTAAAAATACCAAGCACCAAGCGATTGGCTCTGCTGGGAATTAAGA
GAAAAGCCTCAAAGGCTATTGAAGATCTGGAGTACTTTGTCCAAGAAGAG
CTAAGAAAGTATAAGACCGGAGATGCCAAAATTAAGCTGCGCGAGAAGGA
GGAGAGCGTTCGAAATTGCACGCAGGTGGATAAGACCATAATTGATGGTC
TAGTGTTTAAGATCTTCAAACTGATTCTGGACTCTAACGAAGATAAATGG
TCTGGTCGTCTGCCCATGAGAGAGATTGCCCAGGCTCTCACCAAGGAGGA
GCTGAGTGGCATTAAATCCGAGTGCGGCGGCATCAAAACATTGCTGCGCA
ATAAACACGAAGTTTTCGAATTCTGCGGTGGTGATCTCATAGGAATAAGA
ACCCCTAAACCAACGGCTACTCTCCCCAAATCCCATTTGACCATCAAGAA
ACGTAGCTGCTTTTTCAAGCTTCATCATCCGCTGGGATGTCCTCTCGATG
ATGCTGAGTGCTCGTTTATACACGCAAGCTTTCTAGACCAT
BO12551.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-RA | 1566 | CG9386-PA | 157..1563 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-RA | 1652 | CG9386-RA | 176..1582 | 17..1423 | 7035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9553766..9555064 | 1423..125 | 6495 | 100 | Minus |
| 3R | 32079331 | 3R | 9555125..9555233 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:11:47 has no hits.
BO12551.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:28 Download gff for
BO12551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 149..1566 | 10..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:26 Download gff for
BO12551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 149..1573 | 10..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:36 Download gff for
BO12551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 176..1582 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:29 Download gff for
BO12551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 149..1573 | 10..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:57 Download gff for
BO12551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9386-RA | 176..1582 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:57 Download gff for
BO12551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9553764..9555063 | 126..1425 | 99 | <- | Minus |
| 3R | 9555125..9555233 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:36 Download gff for
BO12551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5379486..5380785 | 126..1425 | 99 | <- | Minus |
| arm_3R | 5380847..5380955 | 17..125 | 100 | | Minus |
BO12551.pep Sequence
Translation from 16 to 1441
> BO12551.pep
MSLKEDPSQRTCTGFTIGFKLLSKKLAENILGTGIVDFENCLYECQFASD
SIEGFSVGLLGGEFKLKSKSNTNWLEFVLRPKLLSWSQSKQDEAKVKSLG
LVNVEKYNDLYKELKQRHSQRLLEHWKTAQESTDPLKFIYEDLAIAAYLI
VLWSQTQSEPTAFADLGCGNGLLVHVLNAEGYKGYGYDIRKRKLWSLYPP
DTQRSLIEKAVEPNSFRLDFPGVDWLIGNHSDELSPWLPVLAGRLNINYF
LLPCCPFELSGAKFRRRNTKISAYQDFFQYVTQVSHECGYEILQDRLKIP
STKRLALLGIKRKASKAIEDLEYFVQEELRKYKTGDAKIKLREKEESVRN
CTQVDKTIIDGLVFKIFKLILDSNEDKWSGRLPMREIAQALTKEELSGIK
SECGGIKTLLRNKHEVFEFCGGDLIGIRTPKPTATLPKSHLTIKKRSCFF
KLHHPLGCPLDDAECSFIHASFLDH
BO12551.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9386-PA | 521 | CG9386-PA | 53..521 | 1..469 | 2474 | 100 | Plus |
