Clone Sequence Records
BO12552.3prime Sequence
788 bp (756 high quality bases) assembled on 2006-05-08
> BO12552.3prime
ATGGTCTAGAAAGCTTGCGATCTGCACGGGTGACTCCACTGGTTGTTTCT
CCGGTTGTTGCTTCGACTGTCCAGGATCGGCAGGACGTCTGCGTCGGCGG
CGCCTTTTCTTCTGGGGAGGATTTGGCGGCGGGCTCTGGAAGGTGTCCAC
ATCGAAGACCGGATAGCGTGGAGTAAATCGGGAGGCCTCGCTGACCGTGT
TCGCGTCCGTGTCCGCAATATCAGTGGTCATGAACATGGCCTGCTCGTAG
GTAGGAGGAGGTAAATCTGGTACGAAATCGTCGGCAGCCTCCAACTCATC
ATCTCCATCCTCTGGAAGCTCGAAGTCCTCTAGATCCTCGGCCATCTCGT
AGCCGGAGTTGCTGACCCCGCTTGCGGCCATCTGAGCCAGTTCCATGGCC
CTTGTAGAGGTGCATGGCAAGTCGGCAGGCAGCGAACTTCCAGATGGGAA
GGCGTTAGTTGGCAGGAAGTCCGGTCCGGACACCGCAGTTGCCAGGGGCA
CGTTGCCAATAGTCACAGGGATTATGAGCCGGGGATTAGCCATAAGCCAG
TTCATAACAGCCACCACACGCACTTCGTAAGATACGCGCACCACCTTGCT
TAGGTGCTCGCAGGTGGGCGCCGTTGCCGGAATCCTCAGGGTTTCCGTGT
AAGTCCTCTGCGCATTATGAGCCACCGGACCGCACTCGCGCTTCACCAGC
ATTATCTTCTCGGATGTGGTGCGTAGCGAGGGCGTATCCGCCGTGTATGT
GGCTCTCANATGCAGCATGATCAGTAGCTTCCGACAAT
BO12552.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10086-PA | 1410 | CG10086-RA | 638..1407 | 788..19 | 3806 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10086-RA | 1864 | CG10086-RA | 732..1501 | 788..19 | 3824 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7792193..7792720 | 788..261 | 2614 | 99.6 | Minus |
| 3R | 32079331 | 3R | 7792879..7793120 | 260..19 | 1210 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:17:20 has no hits.
BO12552.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:01 Download gff for
BO12552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-PA | 638..1410 | 16..788 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:00 Download gff for
BO12552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-PA | 638..1410 | 16..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:58:20 Download gff for
BO12552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 732..1501 | 19..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:03:26 Download gff for
BO12552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 732..1501 | 19..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:03:26 Download gff for
BO12552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7792193..7792720 | 261..788 | 99 | -> | Minus |
| 3R | 7792879..7793120 | 19..260 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:58:20 Download gff for
BO12552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3617915..3618442 | 261..788 | 99 | -> | Minus |
| arm_3R | 3618601..3618842 | 19..260 | 100 | | Minus |
BO12552.5prime Sequence
851 bp (781 high quality bases) assembled on 2006-05-08
> BO12552.5prime
GAAGTTATCAGTCGACATGTCGAAGAACTGCATGATAACGTTCGACCAGA
ATGAGCACGGCACCTACTTCACCGGCCAGGTGATAACCGGCAAGGTGATT
GTCAATCTGAACAAGACCAAGAAACTGCGAGGAATAAAACTGCAAATAAG
TGGCTATGCGCAAGCCCAGTGGCGCATCCGCAGACATGGTAAGGCGGTGG
CAATCCAAAACCCCAAGAAGCGATCAAAGCACCAGTACAGCGGGCGGGAG
GACTATATAGCCTCCACCACTTACCTCATGGGTTCCGAGCAGGGCAGCAA
CTTTAACATGGACGCCGGCACGTACACCTACACTTTTGCTTGCCCCATTC
CCAGCCACTGCCCCTCGTCCTTCGAGGGTGCCTATGGACACATCCGGTAT
CTGGCCAAGGTCACCTTTTTGAAGCCAGGAGCTTCCAATCGCACCCACAA
CGTGGGCTTCACTGTGCTAAAGCTGCTGGACTTGAACCAGGAGACCAAGA
TGCTCCGGGAACCGGCGAGCAATGAAGCCGTGGAACACTTTTGCCTGATG
CACACGAAGCCCGTGCAGTTGAAGGTCACTCTCCAGCAGCAGGGCTATGT
TCCGGGTCAGTTCATGTTGATCCACGCCCATGTGCGTAATGACTCCAGCT
CCGATTGTCGGAAGCTACTGATCATGCTGCATTTGAGAGCCACATACACG
GCGGATACGCCCTCGCTACGCACCACATCCGAGAAGATAATGCTGGTGAA
GCGCGAGTGCGGTCCGGTGGCTCATAATGCGCAGAGGACTTACACGGGAA
CCCTGANGATTCCGGCAACGGCGCCCACCTGCGAGCACCTAAGCAAGGTG
G
BO12552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10086-PA | 1410 | CG10086-RA | 1..835 | 17..851 | 4131 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10086-RA | 1864 | CG10086-RA | 93..929 | 15..851 | 4159 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7791669..7792390 | 130..851 | 3584 | 99.7 | Plus |
| 3R | 32079331 | 3R | 7790725..7790842 | 15..132 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:57:01 has no hits.
BO12552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:02 Download gff for
BO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:02 Download gff for
BO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:15 Download gff for
BO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 87..929 | 8..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:15 Download gff for
BO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 87..929 | 8..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:15 Download gff for
BO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7790719..7790841 | 8..131 | 97 | -> | Plus |
| 3R | 7791671..7792390 | 132..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:15 Download gff for
BO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3616441..3616563 | 8..131 | 97 | -> | Plus |
| arm_3R | 3617393..3618112 | 132..851 | 99 | | Plus |
BO12552.complete Sequence
1441 bp assembled on 2006-10-11
GenBank Submission: FJ632484
> BO12552.complete
GAAGTTATCAGTCGACATGTCGAAGAACTGCATGATAACGTTCGACCAGA
ATGAGCACGGCACCTACTTCACCGGCCAGGTGATAACCGGCAAGGTGATT
GTCAATCTGAACAAGACCAAGAAACTGCGAGGAATAAAACTGCAAATAAG
TGGCTATGCGCAAGCCCAGTGGCGCATCCGCAGACATGGTAAGGCGGTGG
CAATCCAAAACCCCAAGAAGCGATCAAAGCACCAGTACAGCGGGCGGGAG
GACTATATAGCCTCCACCACTTACCTCATGGGTTCCGAGCAGGGCAGCAA
CTTTAACATGGACGCCGGCACGTACACCTACACTTTTGCTTGCCCCATTC
CCAGCCACTGCCCCTCGTCCTTCGAGGGTGCCTATGGACACATCCGGTAT
CTGGCCAAGGTCACCTTTTTGAAGCCAGGAGCTTCCAATCGCACCCACAA
CGTGGGCTTCACTGTGCTAAAGCTGCTGGACTTGAACCAGGAGACCAAGA
TGCTCCGGGAACCGGCGAGCAATGAAGCCGTGGAACACTTTTGCCTGATG
CACACGAAGCCCGTGCAGTTGAAGGTCACTCTCCAGCAGCAGGGCTATGT
TCCGGGTCAGTTCATGTTGATCCACGCCCATGTGCGTAATGACTCCAGCT
CCGATTGTCGGAAGCTACTGATCATGCTGCATTTGAGAGCCACATACACG
GCGGATACGCCCTCGCTACGCACCACATCCGAGAAGATAATGCTGGTGAA
GCGCGAGTGCGGTCCGGTGGCTCATAATGCGCAGAGGACTTACACGGAAA
CCCTGAGGATTCCGGCAACGGCGCCCACCTGCGAGCACCTAAGCAAGGTG
GTGCGCGTATCTTACGAAGTGCGTGTGGTGGCTGTTATGAACTGGCTTAT
GGCTAATCCCCGGCTCATAATCCCTGTGACTATTGGCAACGTGCCCCTGG
CAACTGCGGTGTCCGGACCGGACTTCCTGCCAACTAACGCCTTCCCATCT
GGAAGTTCGCTGCCTGCCGACTTGCCATGCACCTCTACAAGGGCCATGGA
ACTGGCTCAGATGGCCGCAAGCGGGGTCAGCAACTCCGGCTACGAGATGG
CCGAGGATCTAGAGGACTTCGAGCTTCCAGAGGATGGAGATGATGAGTTG
GAGGCTGCCGACGATTTCGTACCAGATTTACCTCCTCCTACCTACGAGCA
GGCCATGTTCATGACCACTGATATTGCGGACACGGACGCGAACACGGTCA
GCGAGGCCTCCCGATTTACTCCACGCTATCCGGTCTTCGATGTGGACACC
TTCCAGAGCCCGCCGCCAAATCCTCCCCAGAAGAAAAGGCGCCGCCGACG
CAGACGTCCTGCCGATCCTGGACAGTCGAAGCAACAACCGGAGAAACAAC
CAGTGGAGTCACCCGTGCAGATCGCAAGCTTTCTAGACCAT
BO12552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10086-RA | 1410 | CG10086-PA | 1..1407 | 17..1423 | 7020 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10086-RA | 1864 | CG10086-RA | 93..1501 | 15..1423 | 7030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7791669..7792720 | 130..1181 | 5245 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7792879..7793120 | 1182..1423 | 1210 | 100 | Plus |
| 3R | 32079331 | 3R | 7790725..7790842 | 15..132 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:59:35 has no hits.
BO12552.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:30 Download gff for
BO12552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 1..1410 | 17..1426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:28 Download gff for
BO12552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 79..1493 | 8..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:58 Download gff for
BO12552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 95..1501 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:30 Download gff for
BO12552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 79..1493 | 8..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:41 Download gff for
BO12552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10086-RA | 95..1501 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:41 Download gff for
BO12552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7790727..7790841 | 17..131 | 100 | -> | Plus |
| 3R | 7791671..7792720 | 132..1181 | 99 | -> | Plus |
| 3R | 7792879..7793120 | 1182..1425 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:58 Download gff for
BO12552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3616449..3616563 | 17..131 | 100 | -> | Plus |
| arm_3R | 3617393..3618442 | 132..1181 | 99 | -> | Plus |
| arm_3R | 3618601..3618842 | 1182..1425 | 99 | | Plus |
BO12552.pep Sequence
Translation from 16 to 1441
> BO12552.pep
MSKNCMITFDQNEHGTYFTGQVITGKVIVNLNKTKKLRGIKLQISGYAQA
QWRIRRHGKAVAIQNPKKRSKHQYSGREDYIASTTYLMGSEQGSNFNMDA
GTYTYTFACPIPSHCPSSFEGAYGHIRYLAKVTFLKPGASNRTHNVGFTV
LKLLDLNQETKMLREPASNEAVEHFCLMHTKPVQLKVTLQQQGYVPGQFM
LIHAHVRNDSSSDCRKLLIMLHLRATYTADTPSLRTTSEKIMLVKRECGP
VAHNAQRTYTETLRIPATAPTCEHLSKVVRVSYEVRVVAVMNWLMANPRL
IIPVTIGNVPLATAVSGPDFLPTNAFPSGSSLPADLPCTSTRAMELAQMA
ASGVSNSGYEMAEDLEDFELPEDGDDELEAADDFVPDLPPPTYEQAMFMT
TDIADTDANTVSEASRFTPRYPVFDVDTFQSPPPNPPQKKRRRRRRRPAD
PGQSKQQPEKQPVESPVQIASFLDH
BO12552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10086-PA | 469 | CG10086-PA | 1..469 | 1..469 | 2465 | 100 | Plus |
| CG18745-PA | 433 | CG18745-PA | 1..405 | 1..434 | 659 | 33.9 | Plus |
| CG18747-PB | 418 | CG18747-PB | 1..399 | 1..392 | 541 | 31 | Plus |
| CG18746-PA | 438 | CG18746-PA | 4..306 | 5..311 | 521 | 33.9 | Plus |
| CG18748-PC | 409 | CG18748-PC | 5..392 | 5..428 | 517 | 28.3 | Plus |
