Clone BO12556 Report

Search the DGRC for BO12556

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG9586-RB
Protein status:BO12556.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO12556.3prime Sequence

656 bp (655 high quality bases) assembled on 2006-05-08

> BO12556.3prime
ATGGTCTAGAAAGCTTGCTCGACGCCGTTCGCCTTTGACGGTTTTGCGTT
TCTCCTTCTTTTCCTCGCGCAGTTGCTTTTGCTTTTCCCGATCCTCTTTG
TCCTTTTGCTTTTTGGCCGCACTATCCATTCGGGCCTGCTCCCGCTTTTC
CTTGGCTAGCGCCTGGACATCCGATTTGTTGGTATTCTTGGTGAGCGTTC
CACTGTCATCCTCGCTTTCCGCCTCGGAATTCTCGTCGTCCTCGTTGGCA
ACGGCAGTCTGGGAGTATTGAGCTAGAATCTGCTGCTTGATGCGACGCTC
CTCTTCGGTGTATTCACGCTCCTTGTTTACGGCGGGTTGCAGCTTCTGTT
GCTCCAGCAACTTGGCCAACTGGGCATTCACATCGATATCCAGACCTTTT
TTCGGCGGATCATCGGCGCTGGGATGGCTCTGTAGCCACTTTTGTAGTAT
GGTGGCCACCAGTTCGTCAATGTTGGCGGAACCTGTTTCGCTGAGAATTC
CCTCGAGAGCCTCGGTTTTTTCATCTGTCGTTTCGTCGCCCTCCAAAATT
CCAATAATATACGAACCGAAAACGTTCTCGTCGGTGTTCAATTTGCGCAG
CTGCTCGTTGAGCCAGCTCTGGAAGTCATCCGTGGCGCTCATGTCGACTG
ATAACT

BO12556.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-PB 627 CG9586-RB 1..624 642..19 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 936 CG9586-RB 130..754 643..19 3125 100 Minus
CG9586-RC 966 CG9586-RC 130..514 643..259 1925 100 Minus
CG9586-RC 966 CG9586-RC 542..784 261..19 1215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9165603..9165845 19..261 1215 100 Plus
2L 23513712 2L 9165943..9166164 259..480 1110 100 Plus
2L 23513712 2L 9166223..9166385 481..643 815 100 Plus
Blast to na_te.dros performed on 2015-01-31 12:12:37 has no hits.

BO12556.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:08 Download gff for BO12556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-PB 1..627 15..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:09 Download gff for BO12556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-PB 1..627 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:19 Download gff for BO12556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 15..649 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:36 Download gff for BO12556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 15..649 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:36 Download gff for BO12556.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9165600..9165842 15..258 99 <- Plus
2L 9165943..9166164 259..480 100 <- Plus
2L 9166223..9166391 481..649 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:19 Download gff for BO12556.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9165600..9165842 15..258 99 <- Plus
arm_2L 9165943..9166164 259..480 100 <- Plus
arm_2L 9166223..9166391 481..649 98   Plus

BO12556.5prime Sequence

656 bp (655 high quality bases) assembled on 2006-05-08

> BO12556.5prime
GAAGTTATCAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCA
ACGAGCAGCTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTAT
ATTATTGGAATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGC
TCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGG
TGGCCACCATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGAT
CCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTT
GCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACA
CCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAG
ACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGA
TGACAGTGGAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGC
TAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAG
CAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAA
GAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCGTCGAGCAAGCTTTC
TAGACC

BO12556.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-PB 627 CG9586-RB 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 936 CG9586-RB 130..754 16..640 3125 100 Plus
CG9586-RC 966 CG9586-RC 130..514 16..400 1925 100 Plus
CG9586-RC 966 CG9586-RC 542..784 398..640 1215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9165603..9165845 640..398 1215 100 Minus
2L 23513712 2L 9165943..9166164 400..179 1110 100 Minus
2L 23513712 2L 9166223..9166385 178..16 815 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:58:57 has no hits.

BO12556.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:09 Download gff for BO12556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-PB 1..627 17..644 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:10 Download gff for BO12556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-PB 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:38 Download gff for BO12556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 10..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:34 Download gff for BO12556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 10..644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:34 Download gff for BO12556.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9165600..9165842 401..644 99 <- Minus
2L 9165943..9166164 179..400 100 <- Minus
2L 9166223..9166391 10..178 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:38 Download gff for BO12556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9165600..9165842 401..644 99 <- Minus
arm_2L 9165943..9166164 179..400 100 <- Minus
arm_2L 9166223..9166391 10..178 98   Minus

BO12556.complete Sequence

658 bp assembled on 2006-10-11

GenBank Submission: FJ632485

> BO12556.complete
GAAGTTATCAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCA
ACGAGCAGCTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTAT
ATTATTGGAATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGC
TCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGG
TGGCCACCATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGAT
CCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTT
GCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACA
CCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAG
ACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGA
TGACAGTGGAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGC
TAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAG
CAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAA
GAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCGTCGAGCAAGCTTTC
TAGACCAT

BO12556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 627 CG9586-PB 1..624 17..640 3120 100 Plus
CG9586-RC 657 CG9586-PC 1..384 17..400 1920 100 Plus
CG9586-RC 657 CG9586-PC 412..654 398..640 1215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 936 CG9586-RB 130..754 16..640 3125 100 Plus
CG9586-RC 966 CG9586-RC 130..514 16..400 1925 100 Plus
CG9586-RC 966 CG9586-RC 542..784 398..640 1215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9165603..9165845 640..398 1215 100 Minus
2L 23513712 2L 9165943..9166164 400..179 1110 100 Minus
2L 23513712 2L 9166223..9166385 178..16 815 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:12:59 has no hits.

BO12556.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:31 Download gff for BO12556.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:29 Download gff for BO12556.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 55..688 10..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:09 Download gff for BO12556.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 131..754 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:31 Download gff for BO12556.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 55..688 10..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:51 Download gff for BO12556.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 131..754 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:51 Download gff for BO12556.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9166223..9166384 17..178 100   Minus
2L 9165601..9165842 401..642 99 <- Minus
2L 9165943..9166164 179..400 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:09 Download gff for BO12556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9165601..9165842 401..642 99 <- Minus
arm_2L 9165943..9166164 179..400 100 <- Minus
arm_2L 9166223..9166384 17..178 100   Minus

BO12556.pep Sequence

Translation from 16 to 658

> BO12556.pep
MSATDDFQSWLNEQLRKLNTDENVFGSYIIGILEGDETTDEKTEALEGIL
SETGSANIDELVATILQKWLQSHPSADDPPKKGLDIDVNAQLAKLLEQQK
LQPAVNKEREYTEEERRIKQQILAQYSQTAVANEDDENSEAESEDDSGTL
TKNTNKSDVQALAKEKREQARMDSAAKKQKDKEDREKQKQLREEKKEKRK
TVKGERRRASFLDH

BO12556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-PB 208 CG9586-PB 1..208 1..208 1043 100 Plus
CG9586-PC 218 CG9586-PC 1..218 1..208 1022 95.4 Plus