Clone Sequence Records
BO12556.3prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-08
> BO12556.3prime
ATGGTCTAGAAAGCTTGCTCGACGCCGTTCGCCTTTGACGGTTTTGCGTT
TCTCCTTCTTTTCCTCGCGCAGTTGCTTTTGCTTTTCCCGATCCTCTTTG
TCCTTTTGCTTTTTGGCCGCACTATCCATTCGGGCCTGCTCCCGCTTTTC
CTTGGCTAGCGCCTGGACATCCGATTTGTTGGTATTCTTGGTGAGCGTTC
CACTGTCATCCTCGCTTTCCGCCTCGGAATTCTCGTCGTCCTCGTTGGCA
ACGGCAGTCTGGGAGTATTGAGCTAGAATCTGCTGCTTGATGCGACGCTC
CTCTTCGGTGTATTCACGCTCCTTGTTTACGGCGGGTTGCAGCTTCTGTT
GCTCCAGCAACTTGGCCAACTGGGCATTCACATCGATATCCAGACCTTTT
TTCGGCGGATCATCGGCGCTGGGATGGCTCTGTAGCCACTTTTGTAGTAT
GGTGGCCACCAGTTCGTCAATGTTGGCGGAACCTGTTTCGCTGAGAATTC
CCTCGAGAGCCTCGGTTTTTTCATCTGTCGTTTCGTCGCCCTCCAAAATT
CCAATAATATACGAACCGAAAACGTTCTCGTCGGTGTTCAATTTGCGCAG
CTGCTCGTTGAGCCAGCTCTGGAAGTCATCCGTGGCGCTCATGTCGACTG
ATAACT
BO12556.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-PB | 627 | CG9586-RB | 1..624 | 642..19 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-RB | 936 | CG9586-RB | 130..754 | 643..19 | 3125 | 100 | Minus |
CG9586-RC | 966 | CG9586-RC | 130..514 | 643..259 | 1925 | 100 | Minus |
CG9586-RC | 966 | CG9586-RC | 542..784 | 261..19 | 1215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9165603..9165845 | 19..261 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 9165943..9166164 | 259..480 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 9166223..9166385 | 481..643 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:12:37 has no hits.
BO12556.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:08 Download gff for
BO12556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-PB | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:09 Download gff for
BO12556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-PB | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:19 Download gff for
BO12556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 124..757 | 15..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:36 Download gff for
BO12556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 124..757 | 15..649 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:36 Download gff for
BO12556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9165600..9165842 | 15..258 | 99 | <- | Plus |
2L | 9165943..9166164 | 259..480 | 100 | <- | Plus |
2L | 9166223..9166391 | 481..649 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:19 Download gff for
BO12556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9165600..9165842 | 15..258 | 99 | <- | Plus |
arm_2L | 9165943..9166164 | 259..480 | 100 | <- | Plus |
arm_2L | 9166223..9166391 | 481..649 | 98 | | Plus |
BO12556.5prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-08
> BO12556.5prime
GAAGTTATCAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCA
ACGAGCAGCTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTAT
ATTATTGGAATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGC
TCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGG
TGGCCACCATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGAT
CCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTT
GCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACA
CCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAG
ACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGA
TGACAGTGGAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGC
TAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAG
CAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAA
GAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCGTCGAGCAAGCTTTC
TAGACC
BO12556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-PB | 627 | CG9586-RB | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-RB | 936 | CG9586-RB | 130..754 | 16..640 | 3125 | 100 | Plus |
CG9586-RC | 966 | CG9586-RC | 130..514 | 16..400 | 1925 | 100 | Plus |
CG9586-RC | 966 | CG9586-RC | 542..784 | 398..640 | 1215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9165603..9165845 | 640..398 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 9165943..9166164 | 400..179 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 9166223..9166385 | 178..16 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:58:57 has no hits.
BO12556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:09 Download gff for
BO12556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-PB | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:10 Download gff for
BO12556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-PB | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:38 Download gff for
BO12556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 124..757 | 10..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:34 Download gff for
BO12556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 124..757 | 10..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:34 Download gff for
BO12556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9165600..9165842 | 401..644 | 99 | <- | Minus |
2L | 9165943..9166164 | 179..400 | 100 | <- | Minus |
2L | 9166223..9166391 | 10..178 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:38 Download gff for
BO12556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9165600..9165842 | 401..644 | 99 | <- | Minus |
arm_2L | 9165943..9166164 | 179..400 | 100 | <- | Minus |
arm_2L | 9166223..9166391 | 10..178 | 98 | | Minus |
BO12556.complete Sequence
658 bp assembled on 2006-10-11
GenBank Submission: FJ632485
> BO12556.complete
GAAGTTATCAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCA
ACGAGCAGCTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTAT
ATTATTGGAATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGC
TCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGG
TGGCCACCATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGAT
CCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTT
GCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACA
CCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAG
ACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGA
TGACAGTGGAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGC
TAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAG
CAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAA
GAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCGTCGAGCAAGCTTTC
TAGACCAT
BO12556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-RB | 627 | CG9586-PB | 1..624 | 17..640 | 3120 | 100 | Plus |
CG9586-RC | 657 | CG9586-PC | 1..384 | 17..400 | 1920 | 100 | Plus |
CG9586-RC | 657 | CG9586-PC | 412..654 | 398..640 | 1215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-RB | 936 | CG9586-RB | 130..754 | 16..640 | 3125 | 100 | Plus |
CG9586-RC | 966 | CG9586-RC | 130..514 | 16..400 | 1925 | 100 | Plus |
CG9586-RC | 966 | CG9586-RC | 542..784 | 398..640 | 1215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9165603..9165845 | 640..398 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 9165943..9166164 | 400..179 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 9166223..9166385 | 178..16 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:12:59 has no hits.
BO12556.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:31 Download gff for
BO12556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:29 Download gff for
BO12556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 55..688 | 10..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:09 Download gff for
BO12556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 131..754 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:31 Download gff for
BO12556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 55..688 | 10..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:51 Download gff for
BO12556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 131..754 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:51 Download gff for
BO12556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9166223..9166384 | 17..178 | 100 | | Minus |
2L | 9165601..9165842 | 401..642 | 99 | <- | Minus |
2L | 9165943..9166164 | 179..400 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:09 Download gff for
BO12556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9165601..9165842 | 401..642 | 99 | <- | Minus |
arm_2L | 9165943..9166164 | 179..400 | 100 | <- | Minus |
arm_2L | 9166223..9166384 | 17..178 | 100 | | Minus |
BO12556.pep Sequence
Translation from 16 to 658
> BO12556.pep
MSATDDFQSWLNEQLRKLNTDENVFGSYIIGILEGDETTDEKTEALEGIL
SETGSANIDELVATILQKWLQSHPSADDPPKKGLDIDVNAQLAKLLEQQK
LQPAVNKEREYTEEERRIKQQILAQYSQTAVANEDDENSEAESEDDSGTL
TKNTNKSDVQALAKEKREQARMDSAAKKQKDKEDREKQKQLREEKKEKRK
TVKGERRRASFLDH
BO12556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-PB | 208 | CG9586-PB | 1..208 | 1..208 | 1043 | 100 | Plus |
CG9586-PC | 218 | CG9586-PC | 1..218 | 1..208 | 1022 | 95.4 | Plus |