Clone Sequence Records
BO12558.3prime Sequence
809 bp (764 high quality bases) assembled on 2006-05-08
> BO12558.3prime
ATGGTCTAGAAAGCTTGCTGATCGACCGCAGGTGGGCAGGTTGACGCGGA
AGAACACATTGAGTTCGATGAGGGAGGCGAAAACCATGAAGACCAGATAC
ATCACCAGACAGGCAGTGCCCACCTTCTTGTCCAGCTTAAACTTGTTTGT
GGAGAAGGTCAGGTAAAGCAGGAACAGTGTCGACAACAAAGTGATCGCCG
AGTACTCCAATCCGGCGGAGTTTATGGCCACGTAGTTTTGGCCCGGTTGG
ATCGGGAAAAATACTGCTTTGATCAGCCAGGGAACCCCCAGGCACAGCAG
GATGTCGAAAGTGTTTGACCCAATAGAGTTACAGATTCCCATTGATCCGT
GACCGCGCTTCGCCACAATAACACTAGACACCGCTTCAGGGACACTGGTA
CCAGCTGCCAGGAACGTAATCCCCATCACCGAGTCAGGAATCTTTAGTGT
GTCTCCGATTATCGTTATCATCCACGCTACTACATAGGAAAGCGATCCGA
TCCAAACTATGCACATGATAAAGGTCAGTGGGAAAATCTTATTGTTTTTG
GCCTTCTTGCAGTCAGGAATGGCAATGCGAAATAGCAGATGGATCGGCCA
AATGATGAGCCAGGTAAACTGGGCAAAGCAGCTCTTATCCTTCGGGTATG
AGAGCAGAGAGTATCCCTCCTCCTTACGGCCCTCGTCAGCGGCTGCTACG
GCCACGTGAGATTCTGCCTCGGCATCGTCTAGTGGTGCCATCTGCACAAT
GGCCCCTGGTCCCGAACAAAGACCAACTGCTCCACCTCCTCCTCCGGCAC
TATGGGTGG
BO12558.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:46:43 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zyd-RH | 2341 | CG2893-RH | 1110..1900 | 809..19 | 3955 | 100 | Minus |
zyd-RG | 3164 | CG2893-RG | 860..1650 | 809..19 | 3955 | 100 | Minus |
zyd-RF | 2094 | CG2893-RF | 863..1653 | 809..19 | 3955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23032896..23033250 | 809..455 | 1775 | 100 | Minus |
X | 23542271 | X | 23033701..23034036 | 354..19 | 1680 | 100 | Minus |
X | 23542271 | X | 23033542..23033646 | 456..352 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:06:22 has no hits.
BO12558.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 22:00:14 Download gff for
BO12558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zyd-RF | 863..1660 | 11..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:52 Download gff for
BO12558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zyd-RF | 863..1660 | 11..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:52 Download gff for
BO12558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23032896..23033249 | 456..809 | 100 | -> | Minus |
X | 23033543..23033644 | 354..455 | 100 | -> | Minus |
X | 23033702..23034043 | 11..353 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 22:00:14 Download gff for
BO12558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 11714..12067 | 456..809 | 100 | -> | Minus |
XHet | 12361..12462 | 354..455 | 100 | -> | Minus |
XHet | 12520..12861 | 11..353 | 98 | | Minus |
BO12558.5prime Sequence
799 bp (750 high quality bases) assembled on 2006-05-08
> BO12558.5prime
GAAGTTATCAGTCGACATGGAAGACTATTGGGGTCTTAGCAGCACTACGG
ATATAAATTGCACTCAGCCCGCCATCGATGACTTCCCCCGAGACCTATTC
TCGGAGGCGCAAAGACAGTCTGGTGCTGTTGTACTTCATGTTATAGCCAG
TTTATATTTATTTGTAGCCTTAGCCGTAGTGTGTGATGAGTACTTTGTGC
CAGCAGTTGAGAAAATATGTGCAGCACTCAACATGTCCAATGATGTGGCG
GGTGCCACTTTCATGGCCGCGGCCACCTCCGCCCCAGAATTATTTGTCAA
CGTGATAGGAACCTTTATCACGGAGGGCGACATCGGAGTGGGCACGATTG
TCGGATCGGCGGTATTTAACATCCTGGCAGTGGCCGCGTGCTGCGGAATC
GGAGCTGGCATGACAATACCCTTGGACTGGTGGCCACTGACGCGGGACAG
CATCGCATACGGAGTTACAGTGGCCATTCTCATTTGTGTTATGCACGACG
AGCGCGTCGAGTGGTATGAGGCCCTCATCCTGGTCTCCCTGTATGCCGTC
TATCTTGCGGTCATGTATTTCGACAAAACTTTCCAAAAGTGCGCCAAAGG
TGGCGTTAAGCAGGCTCGTTCTCGCAGCCGGTCCTCCAACTGCAGCATAC
ATACAAAGAACAGCAATGAGAAGGAACCAGAGCTTGTGGAAAACCGCATT
TGCCAGAACATGGCGAACATACAGCTAAACGGAGGACTTAACAAAGAGCA
GGCCAAGGCCACAAGCACATCCGGAGCCGGTACCACCGCGATTTCGATA
BO12558.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:46:44 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zyd-RE | 2006 | CG2893-RE | 82..864 | 17..799 | 3915 | 100 | Plus |
zyd-RH | 2341 | CG2893-RH | 329..1078 | 50..799 | 3750 | 100 | Plus |
zyd-RF | 2094 | CG2893-RF | 83..831 | 51..799 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23030420..23030613 | 223..416 | 955 | 99.5 | Plus |
X | 23542271 | X | 23030666..23030856 | 412..602 | 955 | 100 | Plus |
X | 23542271 | X | 23030189..23030363 | 50..224 | 875 | 100 | Plus |
X | 23542271 | X | 23032743..23032864 | 678..799 | 610 | 100 | Plus |
X | 23542271 | X | 23032518..23032600 | 598..680 | 415 | 100 | Plus |
X | 23542271 | X | 23044008..23044153 | 232..377 | 190 | 75.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:00:03 has no hits.
BO12558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:16:18 Download gff for
BO12558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zyd-RE | 77..863 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:21:46 Download gff for
BO12558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zyd-RE | 77..863 | 9..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:46 Download gff for
BO12558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23023393..23023431 | 9..50 | 92 | -> | Plus |
X | 23030190..23030363 | 51..224 | 100 | -> | Plus |
X | 23030422..23030609 | 225..412 | 100 | -> | Plus |
X | 23030667..23030853 | 413..599 | 100 | -> | Plus |
X | 23032520..23032600 | 600..680 | 100 | -> | Plus |
X | 23032746..23032863 | 681..798 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:16:18 Download gff for
BO12558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 2211..2249 | 9..50 | 92 | -> | Plus |
XHet | 9008..9181 | 51..224 | 100 | -> | Plus |
XHet | 9240..9427 | 225..412 | 100 | -> | Plus |
XHet | 9485..9671 | 413..599 | 100 | -> | Plus |
XHet | 11338..11418 | 600..680 | 100 | -> | Plus |
XHet | 11564..11681 | 681..798 | 100 | | Plus |
BO12558.complete Sequence
1639 bp assembled on 2007-10-31
GenBank Submission: FJ632486
> BO12558.complete
GAAGTTATCAGTCGACATGGAAGACTATTGGGGTCTTAGCAGCACTACGG
ATATAAATTGCACTCAGCCCGCCATCGATGACTTCCCCCGAGACCTATTC
TCGGAGGCGCAAAGACAGTCTGGTGCTGTTGTACTTCATGTTATAGCCAG
TTTATATTTATTTGTAGCCTTAGCCGTAGTGTGTGATGAGTACTTTGTGC
CAGCAGTTGAGAAAATATGTGCAGCACTCAACATGTCCAATGATGTGGCG
GGTGCCACTTTCATGGCCGCGGCCACCTCCGCCCCAGAATTATTTGTCAA
CGTGATAGGAACCTTTATCACGGAGGGCGACATCGGAGTGGGCACGATTG
TCGGATCGGCGGTATTTAACATCCTGGCAGTGGCCGCGTGCTGCGGAATC
GGAGCTGGCATGACAATACCCTTGGACTGGTGGCCACTGACGCGGGACAG
CATCGCATACGGAGTTACAGTGGCCATTCTCATTTGTGTTATGCACGACG
AGCGCGTCGAGTGGTATGAGGCCCTCATCCTGGTCTCCCTGTATGCCGTC
TATCTTGCGGTCATGTATTTCGACAAAACTTTCCAAAAGTGCGCCAAAGG
TGGCGTTAAGCAGGCTCGTTCTCGCAGCCGGTCCTCCAACTGCAGCATAC
ATACAAAGAACAGCAATGAGAAGGAACCAGAGCTTGTGGAAAACCGCATT
TGCCAGAACATGGCGAACATACAGCTAAACGGAGGACTTAACAAAGAGCA
GGCCAAGGCCACAAGCACATCCGGAGCCGGTACCACCGCGATTTCGATAA
CCACCTCGACCATGACCACAACTTTGAGCACCACCCATAGTGCCGGAGGA
GGAGGTGGAGCAGTTGGTCTTTGTTCGGGACCAGGGGCCATTGTGCAGAT
GGCACCACTAGACGATGCCGAGGCAGAATCTCACGTGGCCGTAGCAGCCG
CTGACGAGGGCCGTAAGGAGGAGGGATACTCTCTGCTCTCATACCCGAAG
GATAAGAGCTGCTTTGCCCAGTTTACCTGGCTCATCATTTGGCCGATCCA
TCTGCTATTTCGCATTGCCATTCCTGACTGCAAGAAGGCCAAAAACAATA
AGATTTTCCCACTGACCTTTATCATGTGCATAGTTTGGATCGGATCGCTT
TCCTATGTAGTAGCGTGGATGATAACGATAATCGGAGACACACTAAAGAT
TCCTGACTCGGTGATGGGGATTACGTTCCTGGCAGCTGGTACCAGTGTCC
CTGAAGCGGTGTCTAGTGTTATTGTGGCGAAGCGCGGTCACGGATCAATG
GGAATCTGTAACTCTATTGGGTCAAACACTTTCGACATCCTGCTGTGCCT
GGGGGTTCCCTGGCTGATCAAAGCAGTATTTTTCCCGATCCAACCGGGCC
AAAACTACGTGGCCATAAACTCCGCCGGATTGGAGTACTCGGCGATCACT
TTGTTGTCGACACTGTTCCTGCTTTACCTGACCTTCTCCACAAACAAGTT
TAAGCTGGACAAGAAGGTGGGCACTGCCTGTCTGGTGATGTATCTGGTCT
TCATGGTTTTCGCCTCCCTCATCGAACTCAATGTGTTCTTCCGCGTCAAC
CTGCCCACCTGCGGTCGATCAGCAAGCTTTCTAGACCAT
BO12558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zyd-RE | 1608 | CG2893-PE | 1..1605 | 17..1621 | 8025 | 100 | Plus |
zyd-RF | 1629 | CG2893-PF | 56..1626 | 51..1621 | 7855 | 100 | Plus |
zyd-RA | 1581 | CG2893-PA | 8..1578 | 51..1621 | 7855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zyd-RE | 2006 | CG2893-RE | 82..1686 | 17..1621 | 8025 | 100 | Plus |
zyd-RH | 2341 | CG2893-RH | 329..1900 | 50..1621 | 7860 | 100 | Plus |
zyd-RF | 2094 | CG2893-RF | 83..1653 | 51..1621 | 7855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23032743..23033250 | 678..1185 | 2540 | 100 | Plus |
X | 23542271 | X | 23033701..23034036 | 1286..1621 | 1680 | 100 | Plus |
X | 23542271 | X | 23030420..23030613 | 223..416 | 955 | 99.5 | Plus |
X | 23542271 | X | 23030666..23030856 | 412..602 | 955 | 100 | Plus |
X | 23542271 | X | 23030189..23030363 | 50..224 | 875 | 100 | Plus |
X | 23542271 | X | 23033542..23033646 | 1184..1288 | 525 | 100 | Plus |
X | 23542271 | X | 23032518..23032600 | 598..680 | 415 | 100 | Plus |
X | 23542271 | X | 23044008..23044153 | 232..377 | 190 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:47:09 has no hits.
BO12558.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:39 Download gff for
BO12558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2893-RB | 71..1683 | 9..1624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:51 Download gff for
BO12558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2893-RB | 71..1687 | 9..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:04 Download gff for
BO12558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zyd-RE | 82..1686 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:15 Download gff for
BO12558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2893-RB | 76..1680 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:47 Download gff for
BO12558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zyd-RE | 82..1686 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:47 Download gff for
BO12558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23023398..23023431 | 17..50 | 100 | -> | Plus |
X | 23030190..23030363 | 51..224 | 100 | -> | Plus |
X | 23030422..23030609 | 225..412 | 100 | -> | Plus |
X | 23030667..23030853 | 413..599 | 100 | -> | Plus |
X | 23032520..23032600 | 600..680 | 100 | -> | Plus |
X | 23032746..23033249 | 681..1184 | 100 | -> | Plus |
X | 23033543..23033644 | 1185..1286 | 100 | -> | Plus |
X | 23033702..23034036 | 1287..1623 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:04 Download gff for
BO12558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 12361..12462 | 1185..1286 | 100 | -> | Plus |
XHet | 2216..2249 | 17..50 | 100 | -> | Plus |
XHet | 9008..9181 | 51..224 | 100 | -> | Plus |
XHet | 9240..9427 | 225..412 | 100 | -> | Plus |
XHet | 9485..9671 | 413..599 | 100 | -> | Plus |
XHet | 11338..11418 | 600..680 | 100 | -> | Plus |
XHet | 11564..12067 | 681..1184 | 100 | -> | Plus |
XHet | 12520..12854 | 1287..1623 | 99 | | Plus |
BO12558.pep Sequence
Translation from 16 to 1639
> BO12558.pep
MEDYWGLSSTTDINCTQPAIDDFPRDLFSEAQRQSGAVVLHVIASLYLFV
ALAVVCDEYFVPAVEKICAALNMSNDVAGATFMAAATSAPELFVNVIGTF
ITEGDIGVGTIVGSAVFNILAVAACCGIGAGMTIPLDWWPLTRDSIAYGV
TVAILICVMHDERVEWYEALILVSLYAVYLAVMYFDKTFQKCAKGGVKQA
RSRSRSSNCSIHTKNSNEKEPELVENRICQNMANIQLNGGLNKEQAKATS
TSGAGTTAISITTSTMTTTLSTTHSAGGGGGAVGLCSGPGAIVQMAPLDD
AEAESHVAVAAADEGRKEEGYSLLSYPKDKSCFAQFTWLIIWPIHLLFRI
AIPDCKKAKNNKIFPLTFIMCIVWIGSLSYVVAWMITIIGDTLKIPDSVM
GITFLAAGTSVPEAVSSVIVAKRGHGSMGICNSIGSNTFDILLCLGVPWL
IKAVFFPIQPGQNYVAINSAGLEYSAITLLSTLFLLYLTFSTNKFKLDKK
VGTACLVMYLVFMVFASLIELNVFFRVNLPTCGRSASFLDH
BO12558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zyd-PE | 535 | CG2893-PE | 1..535 | 1..535 | 2761 | 100 | Plus |
zyd-PF | 542 | CG2893-PF | 20..542 | 13..535 | 2693 | 100 | Plus |
zyd-PA | 526 | CG2893-PA | 4..526 | 13..535 | 2693 | 100 | Plus |
zyd-PG | 499 | CG2893-PG | 4..499 | 13..535 | 2515 | 94.8 | Plus |
zyd-PH | 463 | CG2893-PH | 1..463 | 73..535 | 2387 | 100 | Plus |