Clone BO12558 Report

Search the DGRC for BO12558

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG2893-RE
Protein status:BO12558.pep:
Sequenced Size:1639

Clone Sequence Records

BO12558.3prime Sequence

809 bp (764 high quality bases) assembled on 2006-05-08

> BO12558.3prime
ATGGTCTAGAAAGCTTGCTGATCGACCGCAGGTGGGCAGGTTGACGCGGA
AGAACACATTGAGTTCGATGAGGGAGGCGAAAACCATGAAGACCAGATAC
ATCACCAGACAGGCAGTGCCCACCTTCTTGTCCAGCTTAAACTTGTTTGT
GGAGAAGGTCAGGTAAAGCAGGAACAGTGTCGACAACAAAGTGATCGCCG
AGTACTCCAATCCGGCGGAGTTTATGGCCACGTAGTTTTGGCCCGGTTGG
ATCGGGAAAAATACTGCTTTGATCAGCCAGGGAACCCCCAGGCACAGCAG
GATGTCGAAAGTGTTTGACCCAATAGAGTTACAGATTCCCATTGATCCGT
GACCGCGCTTCGCCACAATAACACTAGACACCGCTTCAGGGACACTGGTA
CCAGCTGCCAGGAACGTAATCCCCATCACCGAGTCAGGAATCTTTAGTGT
GTCTCCGATTATCGTTATCATCCACGCTACTACATAGGAAAGCGATCCGA
TCCAAACTATGCACATGATAAAGGTCAGTGGGAAAATCTTATTGTTTTTG
GCCTTCTTGCAGTCAGGAATGGCAATGCGAAATAGCAGATGGATCGGCCA
AATGATGAGCCAGGTAAACTGGGCAAAGCAGCTCTTATCCTTCGGGTATG
AGAGCAGAGAGTATCCCTCCTCCTTACGGCCCTCGTCAGCGGCTGCTACG
GCCACGTGAGATTCTGCCTCGGCATCGTCTAGTGGTGCCATCTGCACAAT
GGCCCCTGGTCCCGAACAAAGACCAACTGCTCCACCTCCTCCTCCGGCAC
TATGGGTGG

BO12558.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:46:43 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
zyd-RH 2341 CG2893-RH 1110..1900 809..19 3955 100 Minus
zyd-RG 3164 CG2893-RG 860..1650 809..19 3955 100 Minus
zyd-RF 2094 CG2893-RF 863..1653 809..19 3955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23032896..23033250 809..455 1775 100 Minus
X 23542271 X 23033701..23034036 354..19 1680 100 Minus
X 23542271 X 23033542..23033646 456..352 525 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:06:22 has no hits.

BO12558.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 22:00:14 Download gff for BO12558.3prime
Subject Subject Range Query Range Percent Splice Strand
zyd-RF 863..1660 11..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:52 Download gff for BO12558.3prime
Subject Subject Range Query Range Percent Splice Strand
zyd-RF 863..1660 11..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:52 Download gff for BO12558.3prime
Subject Subject Range Query Range Percent Splice Strand
X 23032896..23033249 456..809 100 -> Minus
X 23033543..23033644 354..455 100 -> Minus
X 23033702..23034043 11..353 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 22:00:14 Download gff for BO12558.3prime
Subject Subject Range Query Range Percent Splice Strand
XHet 11714..12067 456..809 100 -> Minus
XHet 12361..12462 354..455 100 -> Minus
XHet 12520..12861 11..353 98   Minus

BO12558.5prime Sequence

799 bp (750 high quality bases) assembled on 2006-05-08

> BO12558.5prime
GAAGTTATCAGTCGACATGGAAGACTATTGGGGTCTTAGCAGCACTACGG
ATATAAATTGCACTCAGCCCGCCATCGATGACTTCCCCCGAGACCTATTC
TCGGAGGCGCAAAGACAGTCTGGTGCTGTTGTACTTCATGTTATAGCCAG
TTTATATTTATTTGTAGCCTTAGCCGTAGTGTGTGATGAGTACTTTGTGC
CAGCAGTTGAGAAAATATGTGCAGCACTCAACATGTCCAATGATGTGGCG
GGTGCCACTTTCATGGCCGCGGCCACCTCCGCCCCAGAATTATTTGTCAA
CGTGATAGGAACCTTTATCACGGAGGGCGACATCGGAGTGGGCACGATTG
TCGGATCGGCGGTATTTAACATCCTGGCAGTGGCCGCGTGCTGCGGAATC
GGAGCTGGCATGACAATACCCTTGGACTGGTGGCCACTGACGCGGGACAG
CATCGCATACGGAGTTACAGTGGCCATTCTCATTTGTGTTATGCACGACG
AGCGCGTCGAGTGGTATGAGGCCCTCATCCTGGTCTCCCTGTATGCCGTC
TATCTTGCGGTCATGTATTTCGACAAAACTTTCCAAAAGTGCGCCAAAGG
TGGCGTTAAGCAGGCTCGTTCTCGCAGCCGGTCCTCCAACTGCAGCATAC
ATACAAAGAACAGCAATGAGAAGGAACCAGAGCTTGTGGAAAACCGCATT
TGCCAGAACATGGCGAACATACAGCTAAACGGAGGACTTAACAAAGAGCA
GGCCAAGGCCACAAGCACATCCGGAGCCGGTACCACCGCGATTTCGATA

BO12558.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:46:44 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
zyd-RE 2006 CG2893-RE 82..864 17..799 3915 100 Plus
zyd-RH 2341 CG2893-RH 329..1078 50..799 3750 100 Plus
zyd-RF 2094 CG2893-RF 83..831 51..799 3745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23030420..23030613 223..416 955 99.5 Plus
X 23542271 X 23030666..23030856 412..602 955 100 Plus
X 23542271 X 23030189..23030363 50..224 875 100 Plus
X 23542271 X 23032743..23032864 678..799 610 100 Plus
X 23542271 X 23032518..23032600 598..680 415 100 Plus
X 23542271 X 23044008..23044153 232..377 190 75.3 Plus
Blast to na_te.dros performed on 2015-02-11 13:00:03 has no hits.

BO12558.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:16:18 Download gff for BO12558.5prime
Subject Subject Range Query Range Percent Splice Strand
zyd-RE 77..863 9..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:21:46 Download gff for BO12558.5prime
Subject Subject Range Query Range Percent Splice Strand
zyd-RE 77..863 9..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:46 Download gff for BO12558.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23023393..23023431 9..50 92 -> Plus
X 23030190..23030363 51..224 100 -> Plus
X 23030422..23030609 225..412 100 -> Plus
X 23030667..23030853 413..599 100 -> Plus
X 23032520..23032600 600..680 100 -> Plus
X 23032746..23032863 681..798 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:16:18 Download gff for BO12558.5prime
Subject Subject Range Query Range Percent Splice Strand
XHet 2211..2249 9..50 92 -> Plus
XHet 9008..9181 51..224 100 -> Plus
XHet 9240..9427 225..412 100 -> Plus
XHet 9485..9671 413..599 100 -> Plus
XHet 11338..11418 600..680 100 -> Plus
XHet 11564..11681 681..798 100   Plus

BO12558.complete Sequence

1639 bp assembled on 2007-10-31

GenBank Submission: FJ632486

> BO12558.complete
GAAGTTATCAGTCGACATGGAAGACTATTGGGGTCTTAGCAGCACTACGG
ATATAAATTGCACTCAGCCCGCCATCGATGACTTCCCCCGAGACCTATTC
TCGGAGGCGCAAAGACAGTCTGGTGCTGTTGTACTTCATGTTATAGCCAG
TTTATATTTATTTGTAGCCTTAGCCGTAGTGTGTGATGAGTACTTTGTGC
CAGCAGTTGAGAAAATATGTGCAGCACTCAACATGTCCAATGATGTGGCG
GGTGCCACTTTCATGGCCGCGGCCACCTCCGCCCCAGAATTATTTGTCAA
CGTGATAGGAACCTTTATCACGGAGGGCGACATCGGAGTGGGCACGATTG
TCGGATCGGCGGTATTTAACATCCTGGCAGTGGCCGCGTGCTGCGGAATC
GGAGCTGGCATGACAATACCCTTGGACTGGTGGCCACTGACGCGGGACAG
CATCGCATACGGAGTTACAGTGGCCATTCTCATTTGTGTTATGCACGACG
AGCGCGTCGAGTGGTATGAGGCCCTCATCCTGGTCTCCCTGTATGCCGTC
TATCTTGCGGTCATGTATTTCGACAAAACTTTCCAAAAGTGCGCCAAAGG
TGGCGTTAAGCAGGCTCGTTCTCGCAGCCGGTCCTCCAACTGCAGCATAC
ATACAAAGAACAGCAATGAGAAGGAACCAGAGCTTGTGGAAAACCGCATT
TGCCAGAACATGGCGAACATACAGCTAAACGGAGGACTTAACAAAGAGCA
GGCCAAGGCCACAAGCACATCCGGAGCCGGTACCACCGCGATTTCGATAA
CCACCTCGACCATGACCACAACTTTGAGCACCACCCATAGTGCCGGAGGA
GGAGGTGGAGCAGTTGGTCTTTGTTCGGGACCAGGGGCCATTGTGCAGAT
GGCACCACTAGACGATGCCGAGGCAGAATCTCACGTGGCCGTAGCAGCCG
CTGACGAGGGCCGTAAGGAGGAGGGATACTCTCTGCTCTCATACCCGAAG
GATAAGAGCTGCTTTGCCCAGTTTACCTGGCTCATCATTTGGCCGATCCA
TCTGCTATTTCGCATTGCCATTCCTGACTGCAAGAAGGCCAAAAACAATA
AGATTTTCCCACTGACCTTTATCATGTGCATAGTTTGGATCGGATCGCTT
TCCTATGTAGTAGCGTGGATGATAACGATAATCGGAGACACACTAAAGAT
TCCTGACTCGGTGATGGGGATTACGTTCCTGGCAGCTGGTACCAGTGTCC
CTGAAGCGGTGTCTAGTGTTATTGTGGCGAAGCGCGGTCACGGATCAATG
GGAATCTGTAACTCTATTGGGTCAAACACTTTCGACATCCTGCTGTGCCT
GGGGGTTCCCTGGCTGATCAAAGCAGTATTTTTCCCGATCCAACCGGGCC
AAAACTACGTGGCCATAAACTCCGCCGGATTGGAGTACTCGGCGATCACT
TTGTTGTCGACACTGTTCCTGCTTTACCTGACCTTCTCCACAAACAAGTT
TAAGCTGGACAAGAAGGTGGGCACTGCCTGTCTGGTGATGTATCTGGTCT
TCATGGTTTTCGCCTCCCTCATCGAACTCAATGTGTTCTTCCGCGTCAAC
CTGCCCACCTGCGGTCGATCAGCAAGCTTTCTAGACCAT

BO12558.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
zyd-RE 1608 CG2893-PE 1..1605 17..1621 8025 100 Plus
zyd-RF 1629 CG2893-PF 56..1626 51..1621 7855 100 Plus
zyd-RA 1581 CG2893-PA 8..1578 51..1621 7855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
zyd-RE 2006 CG2893-RE 82..1686 17..1621 8025 100 Plus
zyd-RH 2341 CG2893-RH 329..1900 50..1621 7860 100 Plus
zyd-RF 2094 CG2893-RF 83..1653 51..1621 7855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23032743..23033250 678..1185 2540 100 Plus
X 23542271 X 23033701..23034036 1286..1621 1680 100 Plus
X 23542271 X 23030420..23030613 223..416 955 99.5 Plus
X 23542271 X 23030666..23030856 412..602 955 100 Plus
X 23542271 X 23030189..23030363 50..224 875 100 Plus
X 23542271 X 23033542..23033646 1184..1288 525 100 Plus
X 23542271 X 23032518..23032600 598..680 415 100 Plus
X 23542271 X 23044008..23044153 232..377 190 75.3 Plus
Blast to na_te.dros performed on 2014-11-27 10:47:09 has no hits.

BO12558.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:39 Download gff for BO12558.complete
Subject Subject Range Query Range Percent Splice Strand
CG2893-RB 71..1683 9..1624 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:51 Download gff for BO12558.complete
Subject Subject Range Query Range Percent Splice Strand
CG2893-RB 71..1687 9..1629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:04 Download gff for BO12558.complete
Subject Subject Range Query Range Percent Splice Strand
zyd-RE 82..1686 17..1623 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:15 Download gff for BO12558.complete
Subject Subject Range Query Range Percent Splice Strand
CG2893-RB 76..1680 17..1623 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:47 Download gff for BO12558.complete
Subject Subject Range Query Range Percent Splice Strand
zyd-RE 82..1686 17..1623 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:47 Download gff for BO12558.complete
Subject Subject Range Query Range Percent Splice Strand
X 23023398..23023431 17..50 100 -> Plus
X 23030190..23030363 51..224 100 -> Plus
X 23030422..23030609 225..412 100 -> Plus
X 23030667..23030853 413..599 100 -> Plus
X 23032520..23032600 600..680 100 -> Plus
X 23032746..23033249 681..1184 100 -> Plus
X 23033543..23033644 1185..1286 100 -> Plus
X 23033702..23034036 1287..1623 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:04 Download gff for BO12558.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 12361..12462 1185..1286 100 -> Plus
XHet 2216..2249 17..50 100 -> Plus
XHet 9008..9181 51..224 100 -> Plus
XHet 9240..9427 225..412 100 -> Plus
XHet 9485..9671 413..599 100 -> Plus
XHet 11338..11418 600..680 100 -> Plus
XHet 11564..12067 681..1184 100 -> Plus
XHet 12520..12854 1287..1623 99   Plus

BO12558.pep Sequence

Translation from 16 to 1639

> BO12558.pep
MEDYWGLSSTTDINCTQPAIDDFPRDLFSEAQRQSGAVVLHVIASLYLFV
ALAVVCDEYFVPAVEKICAALNMSNDVAGATFMAAATSAPELFVNVIGTF
ITEGDIGVGTIVGSAVFNILAVAACCGIGAGMTIPLDWWPLTRDSIAYGV
TVAILICVMHDERVEWYEALILVSLYAVYLAVMYFDKTFQKCAKGGVKQA
RSRSRSSNCSIHTKNSNEKEPELVENRICQNMANIQLNGGLNKEQAKATS
TSGAGTTAISITTSTMTTTLSTTHSAGGGGGAVGLCSGPGAIVQMAPLDD
AEAESHVAVAAADEGRKEEGYSLLSYPKDKSCFAQFTWLIIWPIHLLFRI
AIPDCKKAKNNKIFPLTFIMCIVWIGSLSYVVAWMITIIGDTLKIPDSVM
GITFLAAGTSVPEAVSSVIVAKRGHGSMGICNSIGSNTFDILLCLGVPWL
IKAVFFPIQPGQNYVAINSAGLEYSAITLLSTLFLLYLTFSTNKFKLDKK
VGTACLVMYLVFMVFASLIELNVFFRVNLPTCGRSASFLDH

BO12558.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
zyd-PE 535 CG2893-PE 1..535 1..535 2761 100 Plus
zyd-PF 542 CG2893-PF 20..542 13..535 2693 100 Plus
zyd-PA 526 CG2893-PA 4..526 13..535 2693 100 Plus
zyd-PG 499 CG2893-PG 4..499 13..535 2515 94.8 Plus
zyd-PH 463 CG2893-PH 1..463 73..535 2387 100 Plus