Clone Sequence Records
BO12560.3prime Sequence
662 bp (661 high quality bases) assembled on 2006-05-08
> BO12560.3prime
ATGGTCTAGAAAGCTTGCGCACACCAATCGATAGGATATGTACCGTCCCG
CCGTCTCAGAGGAACGGATGATCTTAACCACCTGGCCGCGCTTGAGTCCA
AAGTACCGGGCCACGGGATCGCCCGCCTGGATCCTCATCAACATGTTCTC
CTTCAGTTTGTAACGGCTGAGCAGCTCCTGCTTCTCCTCGACGGTCATGA
CCACGTGCTCCGGGACCAGTTCGTGCTCCGTGATGTTGATCAGCAGTTCG
GATTCGAGAAACTGTTCCAGGATGTACTTGGGGGCCATATCTACGAGCGA
TTGCTTGGCGGAGGGCGTCATGCCGCCCTGCACCACAACGATGGCCCGGT
GGATGTTCTCTTCCTGCATGCGAGTGCAGTACGTCTTGATTGTCTTGATG
CCGATCTTCGGCTCCTCGGGAAAGAAGACGAACATCTGGTCCGTGGGATC
GTCGTTGTGGGCCACCAAAACTATCAAATCGGAACGAGCAGGTCGCTTTT
CGCTGGGTTTGTCGCCGAACATTTCCTTGAACTGCTCCAAGGTCTGGTCC
AACTCGTCTTGGGTCACCAGGTAGCCCCGATCGTGGCTCAGCTGCATGAT
GGTCTTGCGAATGCGCCACAGCTTGTAGGTTTCCGCTTCGTCATCCATGT
CGACTGATAACT
BO12560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11979-PA | 633 | Rpb5-RA | 1..630 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-RB | 1030 | CG11979-RB | 96..726 | 649..19 | 3155 | 100 | Minus |
| Rpb5-RA | 816 | CG11979-RA | 96..726 | 649..19 | 3155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10898335..10898965 | 19..649 | 3155 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:44:59 has no hits.
BO12560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:14 Download gff for
BO12560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-PA | 1..633 | 16..648 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:14 Download gff for
BO12560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11979-PA | 1..633 | 16..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:03:39 Download gff for
BO12560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 91..733 | 12..658 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:35 Download gff for
BO12560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 91..733 | 12..658 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:35 Download gff for
BO12560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10898328..10898970 | 12..658 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:03:39 Download gff for
BO12560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6785833..6786475 | 12..658 | 98 | | Plus |
BO12560.5prime Sequence
662 bp (661 high quality bases) assembled on 2006-05-08
> BO12560.5prime
GAAGTTATCAGTCGACATGGATGACGAAGCGGAAACCTACAAGCTGTGGC
GCATTCGCAAGACCATCATGCAGCTGAGCCACGATCGGGGCTACCTGGTG
ACCCAAGACGAGTTGGACCAGACCTTGGAGCAGTTCAAGGAAATGTTCGG
CGACAAACCCAGCGAAAAGCGACCTGCTCGTTCCGATTTGATAGTTTTGG
TGGCCCACAACGACGATCCCACGGACCAGATGTTCGTCTTCTTTCCCGAG
GAGCCGAAGATCGGCATCAAGACAATCAAGACGTACTGCACTCGCATGCA
GGAAGAGAACATCCACCGGGCCATCGTTGTGGTGCAGGGCGGCATGACGC
CCTCCGCCAAGCAATCGCTCGTAGATATGGCCCCCAAGTACATCCTGGAA
CAGTTTCTCGAATCCGAACTGCTGATCAACATCACGGAGCACGAACTGGT
CCCGGAGCACGTGGTCATGACCGTCGAGGAGAAGCAGGAGCTGCTCAGCC
GTTACAAACTGAAGGAGAACATGTTGATGAGGATCCAGGCGGGCGATCCC
GTGGCCCGGTACTTTGGACTCAAGCGCGGCCAGGTGGTTAAGATCATCCG
TTCCTCTGAGACGGCGGGACGGTACATATCCTATCGATTGGTGTGCGCAA
GCTTTCTAGACC
BO12560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11979-PA | 633 | Rpb5-RA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-RB | 1030 | CG11979-RB | 96..726 | 16..646 | 3155 | 100 | Plus |
| Rpb5-RA | 816 | CG11979-RA | 96..726 | 16..646 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10898335..10898965 | 646..16 | 3155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:57:01 has no hits.
BO12560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:15 Download gff for
BO12560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-PA | 1..633 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:16 Download gff for
BO12560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11979-PA | 1..633 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:57 Download gff for
BO12560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 91..733 | 7..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:07 Download gff for
BO12560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 91..733 | 7..653 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:07 Download gff for
BO12560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10898328..10898970 | 7..653 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:57 Download gff for
BO12560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6785833..6786475 | 7..653 | 98 | | Minus |
BO12560.complete Sequence
664 bp assembled on 2006-10-11
GenBank Submission: FJ632487
> BO12560.complete
GAAGTTATCAGTCGACATGGATGACGAAGCGGAAACCTACAAGCTGTGGC
GCATTCGCAAGACCATCATGCAGCTGAGCCACGATCGGGGCTACCTGGTG
ACCCAAGACGAGTTGGACCAGACCTTGGAGCAGTTCAAGGAAATGTTCGG
CGACAAACCCAGCGAAAAGCGACCTGCTCGTTCCGATTTGATAGTTTTGG
TGGCCCACAACGACGATCCCACGGACCAGATGTTCGTCTTCTTTCCCGAG
GAGCCGAAGATCGGCATCAAGACAATCAAGACGTACTGCACTCGCATGCA
GGAAGAGAACATCCACCGGGCCATCGTTGTGGTGCAGGGCGGCATGACGC
CCTCCGCCAAGCAATCGCTCGTAGATATGGCCCCCAAGTACATCCTGGAA
CAGTTTCTCGAATCCGAACTGCTGATCAACATCACGGAGCACGAACTGGT
CCCGGAGCACGTGGTCATGACCGTCGAGGAGAAGCAGGAGCTGCTCAGCC
GTTACAAACTGAAGGAGAACATGTTGATGAGGATCCAGGCGGGCGATCCC
GTGGCCCGGTACTTTGGACTCAAGCGCGGCCAGGTGGTTAAGATCATCCG
TTCCTCTGAGACGGCGGGACGGTACATATCCTATCGATTGGTGTGCGCAA
GCTTTCTAGACCAT
BO12560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-RB | 633 | CG11979-PB | 1..630 | 17..646 | 3150 | 100 | Plus |
| Rpb5-RA | 633 | CG11979-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-RB | 1030 | CG11979-RB | 96..726 | 16..646 | 3155 | 100 | Plus |
| Rpb5-RA | 816 | CG11979-RA | 96..726 | 16..646 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10898335..10898965 | 646..16 | 3155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:08:10 has no hits.
BO12560.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:31 Download gff for
BO12560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 1..633 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:31 Download gff for
BO12560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 89..731 | 7..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:02 Download gff for
BO12560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 97..726 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:32 Download gff for
BO12560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 89..731 | 7..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:30 Download gff for
BO12560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb5-RA | 97..726 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:30 Download gff for
BO12560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10898332..10898964 | 17..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:02 Download gff for
BO12560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6785837..6786469 | 17..648 | 99 | | Minus |
BO12560.pep Sequence
Translation from 16 to 664
> BO12560.pep
MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSE
KRPARSDLIVLVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIH
RAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVV
MTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETA
GRYISYRLVCASFLDH
BO12560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb5-PB | 210 | CG11979-PB | 1..210 | 1..210 | 1076 | 100 | Plus |
| Rpb5-PA | 210 | CG11979-PA | 1..210 | 1..210 | 1076 | 100 | Plus |
