Clone Sequence Records
BO12562.3prime Sequence
704 bp (703 high quality bases) assembled on 2006-05-08
> BO12562.3prime
ATGGTCTAGAAAGCTTGCCTCCACTTTCTTGCCGCTCACCGGCTCCGACT
TCTGGCGCCGCTCCTGCCGCTCGCGTACATCCACGGCCGCCAGATCGATG
CCCGCCACGTAGGCGTGCATCACCGAGATCAGGGCCTTGAGCACGGCGAA
GGGACCCGTGAGGAAGGCGAGTATCTTGAAGAGCGATGCGCCGAATATCA
GCGGGCCGTAGGTGAAATGCAAGAGGTACAAGCACACGTAAAACAGCTCA
TTGACGCAGCACATGAATGTGAGTATGTCCTTCTGGTAATACAATCGCAT
TATGAAGTTGTCATTCACCTTGTGCGAGCTGCGTCCGACCACAACGCTCG
TCTGCATGAAGAGCCAGTGACAGGCCACGTCGATGGCGATGGACAGCTGG
AACCAGAACATGTACCGGGGATAGAAGTAGGCCAGGGTGACCAGTAGGCC
GGTGGTGCCGCAGCGATCGGTCAACTGGTCTAGCATGGCGCCAAAGCGAG
TGCTTTGGTTAAAGGCTCGGGCTGCTTGTCCATCGACGGCGTCCAGGAGG
GCGGAGGTTACATAACACCAGCCGGAGATCACATAGTTGGTGGACATGAA
CCAGAAGGCGATCAGGGCCAGAACGATGCGGGCGTAGCCGATCAGATTTG
GCACAAAGATGAAGACGTTATCGTGCTCGGCAATTGTCATGTCGACTGAT
AACT
BO12562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9245-PA | 675 | CG9245-RA | 1..672 | 690..19 | 3335 | 99.8 | Minus |
CG9245-PB | 246 | CG9245-RB | 1..187 | 690..504 | 935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-RA | 1377 | CG9245-RA | 150..821 | 690..19 | 3345 | 99.9 | Minus |
Pis-RB | 1652 | CG9245-RB | 612..1096 | 503..19 | 2410 | 99.8 | Minus |
Pis-RB | 1652 | CG9245-RB | 150..336 | 690..504 | 935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15702007..15702185 | 19..197 | 880 | 99.4 | Plus |
X | 23542271 | X | 15702508..15702662 | 349..503 | 775 | 100 | Plus |
X | 23542271 | X | 15702264..15702415 | 198..349 | 760 | 100 | Plus |
X | 23542271 | X | 15703183..15703319 | 503..639 | 685 | 100 | Plus |
X | 23542271 | X | 15703569..15703621 | 638..690 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:23:16 has no hits.
BO12562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:18 Download gff for
BO12562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9245-PA | 1..675 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:20 Download gff for
BO12562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9245-PA | 1..675 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:34 Download gff for
BO12562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..825 | 15..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:41 Download gff for
BO12562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..825 | 15..690 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:41 Download gff for
BO12562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15702002..15702185 | 15..197 | 98 | <- | Plus |
X | 15702264..15702415 | 198..349 | 100 | <- | Plus |
X | 15702509..15702662 | 350..503 | 100 | <- | Plus |
X | 15703184..15703318 | 504..638 | 100 | <- | Plus |
X | 15703570..15703621 | 639..690 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:34 Download gff for
BO12562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15596297..15596448 | 198..349 | 100 | <- | Plus |
arm_X | 15596035..15596218 | 15..197 | 98 | <- | Plus |
arm_X | 15596542..15596695 | 350..503 | 100 | <- | Plus |
arm_X | 15597217..15597351 | 504..638 | 100 | <- | Plus |
arm_X | 15597603..15597654 | 639..690 | 100 | | Plus |
BO12562.5prime Sequence
704 bp (703 high quality bases) assembled on 2006-05-08
> BO12562.5prime
GAAGTTATCAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCT
TTGTGCCAAATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCC
TTCTGGTTCATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAAC
CTCCGCCCTCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACC
AAAGCACTCGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGC
ACCACCGGCCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTT
CTGGTTCCAGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCA
TGCAGACGAGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAAC
TTCATAATGCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTG
CGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACG
GCCCGCTGATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACG
GGTCCCTTCGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGT
GGCGGGCATCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGC
GCCAGAAGTCGGAGCCGGTGAGCGGCAAGAAAGTGGAGGCAAGCTTTCTA
GACC
BO12562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9245-PA | 675 | CG9245-RA | 1..672 | 17..688 | 3335 | 99.8 | Plus |
CG9245-PB | 246 | CG9245-RB | 1..187 | 17..203 | 935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-RA | 1377 | CG9245-RA | 150..821 | 17..688 | 3345 | 99.9 | Plus |
Pis-RB | 1652 | CG9245-RB | 612..1096 | 204..688 | 2410 | 99.8 | Plus |
Pis-RB | 1652 | CG9245-RB | 150..336 | 17..203 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15702007..15702185 | 688..510 | 880 | 99.4 | Minus |
X | 23542271 | X | 15702508..15702662 | 358..204 | 775 | 100 | Minus |
X | 23542271 | X | 15702264..15702415 | 509..358 | 760 | 100 | Minus |
X | 23542271 | X | 15703183..15703319 | 204..68 | 685 | 100 | Minus |
X | 23542271 | X | 15703569..15703621 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:15:38 has no hits.
BO12562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:19 Download gff for
BO12562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9245-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:22 Download gff for
BO12562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9245-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:26 Download gff for
BO12562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..825 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:43 Download gff for
BO12562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..825 | 17..692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:43 Download gff for
BO12562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15702002..15702185 | 510..692 | 98 | <- | Minus |
X | 15702264..15702415 | 358..509 | 100 | <- | Minus |
X | 15702509..15702662 | 204..357 | 100 | <- | Minus |
X | 15703184..15703318 | 69..203 | 100 | <- | Minus |
X | 15703570..15703621 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:26 Download gff for
BO12562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15597603..15597654 | 17..68 | 100 | | Minus |
arm_X | 15596035..15596218 | 510..692 | 98 | <- | Minus |
arm_X | 15596297..15596448 | 358..509 | 100 | <- | Minus |
arm_X | 15596542..15596695 | 204..357 | 100 | <- | Minus |
arm_X | 15597217..15597351 | 69..203 | 100 | <- | Minus |
BO12562.complete Sequence
706 bp assembled on 2006-10-11
GenBank Submission: FJ632488
> BO12562.complete
GAAGTTATCAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCT
TTGTGCCAAATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCC
TTCTGGTTCATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAAC
CTCCGCCCTCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACC
AAAGCACTCGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGC
ACCACCGGCCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTT
CTGGTTCCAGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCA
TGCAGACGAGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAAC
TTCATAATGCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTG
CGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACG
GCCCGCTGATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACG
GGTCCCTTCGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGT
GGCGGGCATCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGC
GCCAGAAGTCGGAGCCGGTGAGCGGCAAGAAAGTGGAGGCAAGCTTTCTA
GACCAT
BO12562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-RA | 675 | CG9245-PA | 1..672 | 17..688 | 3345 | 99.9 | Plus |
Pis-RB | 246 | CG9245-PB | 1..187 | 17..203 | 935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-RA | 1377 | CG9245-RA | 150..821 | 17..688 | 3345 | 99.9 | Plus |
Pis-RB | 1652 | CG9245-RB | 612..1096 | 204..688 | 2410 | 99.8 | Plus |
Pis-RB | 1652 | CG9245-RB | 150..336 | 17..203 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15702007..15702185 | 688..510 | 880 | 99.4 | Minus |
X | 23542271 | X | 15702508..15702662 | 358..204 | 775 | 100 | Minus |
X | 23542271 | X | 15702264..15702415 | 509..358 | 760 | 100 | Minus |
X | 23542271 | X | 15703183..15703319 | 204..68 | 685 | 100 | Minus |
X | 23542271 | X | 15703569..15703621 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:13:59 has no hits.
BO12562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:32 Download gff for
BO12562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:32 Download gff for
BO12562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 145..820 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:41 Download gff for
BO12562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..821 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:33 Download gff for
BO12562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 145..820 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:25 Download gff for
BO12562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..821 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:25 Download gff for
BO12562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15702004..15702185 | 510..690 | 98 | <- | Minus |
X | 15702264..15702415 | 358..509 | 100 | <- | Minus |
X | 15702509..15702662 | 204..357 | 100 | <- | Minus |
X | 15703184..15703318 | 69..203 | 100 | <- | Minus |
X | 15703570..15703621 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:41 Download gff for
BO12562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15596037..15596218 | 510..690 | 98 | <- | Minus |
arm_X | 15596297..15596448 | 358..509 | 100 | <- | Minus |
arm_X | 15596542..15596695 | 204..357 | 100 | <- | Minus |
arm_X | 15597217..15597351 | 69..203 | 100 | <- | Minus |
arm_X | 15597603..15597654 | 17..68 | 100 | | Minus |
BO12562.pep Sequence
Translation from 16 to 706
> BO12562.pep
MTIAEHDNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLD
AVDGQAARAFNQSTRFGAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLS
IAIDVACHWLFMQTSVVVGRSSHKVNDNFIMRLYYQKDILTFMCCVNELF
YVCLYLLHFTYGPLIFGASLFKILAFLTGPFAVLKALISVMHAYVAGIDL
AAVDVRERQERRQKSEPVSGKKVEASFLDH
BO12562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-PA | 224 | CG9245-PA | 1..224 | 1..224 | 1171 | 100 | Plus |
Pis-PB | 81 | CG9245-PB | 1..63 | 1..63 | 324 | 98.4 | Plus |