Clone BO12562 Report

Search the DGRC for BO12562

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptPis-RA
Protein status:BO12562.pep: validated full length
Sequenced Size:706

Clone Sequence Records

BO12562.3prime Sequence

704 bp (703 high quality bases) assembled on 2006-05-08

> BO12562.3prime
ATGGTCTAGAAAGCTTGCCTCCACTTTCTTGCCGCTCACCGGCTCCGACT
TCTGGCGCCGCTCCTGCCGCTCGCGTACATCCACGGCCGCCAGATCGATG
CCCGCCACGTAGGCGTGCATCACCGAGATCAGGGCCTTGAGCACGGCGAA
GGGACCCGTGAGGAAGGCGAGTATCTTGAAGAGCGATGCGCCGAATATCA
GCGGGCCGTAGGTGAAATGCAAGAGGTACAAGCACACGTAAAACAGCTCA
TTGACGCAGCACATGAATGTGAGTATGTCCTTCTGGTAATACAATCGCAT
TATGAAGTTGTCATTCACCTTGTGCGAGCTGCGTCCGACCACAACGCTCG
TCTGCATGAAGAGCCAGTGACAGGCCACGTCGATGGCGATGGACAGCTGG
AACCAGAACATGTACCGGGGATAGAAGTAGGCCAGGGTGACCAGTAGGCC
GGTGGTGCCGCAGCGATCGGTCAACTGGTCTAGCATGGCGCCAAAGCGAG
TGCTTTGGTTAAAGGCTCGGGCTGCTTGTCCATCGACGGCGTCCAGGAGG
GCGGAGGTTACATAACACCAGCCGGAGATCACATAGTTGGTGGACATGAA
CCAGAAGGCGATCAGGGCCAGAACGATGCGGGCGTAGCCGATCAGATTTG
GCACAAAGATGAAGACGTTATCGTGCTCGGCAATTGTCATGTCGACTGAT
AACT

BO12562.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9245-PA 675 CG9245-RA 1..672 690..19 3335 99.8 Minus
CG9245-PB 246 CG9245-RB 1..187 690..504 935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 1377 CG9245-RA 150..821 690..19 3345 99.9 Minus
Pis-RB 1652 CG9245-RB 612..1096 503..19 2410 99.8 Minus
Pis-RB 1652 CG9245-RB 150..336 690..504 935 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15702007..15702185 19..197 880 99.4 Plus
X 23542271 X 15702508..15702662 349..503 775 100 Plus
X 23542271 X 15702264..15702415 198..349 760 100 Plus
X 23542271 X 15703183..15703319 503..639 685 100 Plus
X 23542271 X 15703569..15703621 638..690 265 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:23:16 has no hits.

BO12562.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:18 Download gff for BO12562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9245-PA 1..675 16..690 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:20 Download gff for BO12562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9245-PA 1..675 16..690 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:34 Download gff for BO12562.3prime
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..825 15..690 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:41 Download gff for BO12562.3prime
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..825 15..690 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:41 Download gff for BO12562.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15702002..15702185 15..197 98 <- Plus
X 15702264..15702415 198..349 100 <- Plus
X 15702509..15702662 350..503 100 <- Plus
X 15703184..15703318 504..638 100 <- Plus
X 15703570..15703621 639..690 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:34 Download gff for BO12562.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15596297..15596448 198..349 100 <- Plus
arm_X 15596035..15596218 15..197 98 <- Plus
arm_X 15596542..15596695 350..503 100 <- Plus
arm_X 15597217..15597351 504..638 100 <- Plus
arm_X 15597603..15597654 639..690 100   Plus

BO12562.5prime Sequence

704 bp (703 high quality bases) assembled on 2006-05-08

> BO12562.5prime
GAAGTTATCAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCT
TTGTGCCAAATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCC
TTCTGGTTCATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAAC
CTCCGCCCTCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACC
AAAGCACTCGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGC
ACCACCGGCCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTT
CTGGTTCCAGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCA
TGCAGACGAGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAAC
TTCATAATGCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTG
CGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACG
GCCCGCTGATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACG
GGTCCCTTCGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGT
GGCGGGCATCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGC
GCCAGAAGTCGGAGCCGGTGAGCGGCAAGAAAGTGGAGGCAAGCTTTCTA
GACC

BO12562.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9245-PA 675 CG9245-RA 1..672 17..688 3335 99.8 Plus
CG9245-PB 246 CG9245-RB 1..187 17..203 935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 1377 CG9245-RA 150..821 17..688 3345 99.9 Plus
Pis-RB 1652 CG9245-RB 612..1096 204..688 2410 99.8 Plus
Pis-RB 1652 CG9245-RB 150..336 17..203 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15702007..15702185 688..510 880 99.4 Minus
X 23542271 X 15702508..15702662 358..204 775 100 Minus
X 23542271 X 15702264..15702415 509..358 760 100 Minus
X 23542271 X 15703183..15703319 204..68 685 100 Minus
X 23542271 X 15703569..15703621 69..17 265 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:15:38 has no hits.

BO12562.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:19 Download gff for BO12562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9245-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:22 Download gff for BO12562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9245-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:26 Download gff for BO12562.5prime
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..825 17..692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:43 Download gff for BO12562.5prime
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..825 17..692 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:43 Download gff for BO12562.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15702002..15702185 510..692 98 <- Minus
X 15702264..15702415 358..509 100 <- Minus
X 15702509..15702662 204..357 100 <- Minus
X 15703184..15703318 69..203 100 <- Minus
X 15703570..15703621 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:26 Download gff for BO12562.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15597603..15597654 17..68 100   Minus
arm_X 15596035..15596218 510..692 98 <- Minus
arm_X 15596297..15596448 358..509 100 <- Minus
arm_X 15596542..15596695 204..357 100 <- Minus
arm_X 15597217..15597351 69..203 100 <- Minus

BO12562.complete Sequence

706 bp assembled on 2006-10-11

GenBank Submission: FJ632488

> BO12562.complete
GAAGTTATCAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCT
TTGTGCCAAATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCC
TTCTGGTTCATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAAC
CTCCGCCCTCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACC
AAAGCACTCGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGC
ACCACCGGCCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTT
CTGGTTCCAGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCA
TGCAGACGAGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAAC
TTCATAATGCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTG
CGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACG
GCCCGCTGATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACG
GGTCCCTTCGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGT
GGCGGGCATCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGC
GCCAGAAGTCGGAGCCGGTGAGCGGCAAGAAAGTGGAGGCAAGCTTTCTA
GACCAT

BO12562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 675 CG9245-PA 1..672 17..688 3345 99.9 Plus
Pis-RB 246 CG9245-PB 1..187 17..203 935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 1377 CG9245-RA 150..821 17..688 3345 99.9 Plus
Pis-RB 1652 CG9245-RB 612..1096 204..688 2410 99.8 Plus
Pis-RB 1652 CG9245-RB 150..336 17..203 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15702007..15702185 688..510 880 99.4 Minus
X 23542271 X 15702508..15702662 358..204 775 100 Minus
X 23542271 X 15702264..15702415 509..358 760 100 Minus
X 23542271 X 15703183..15703319 204..68 685 100 Minus
X 23542271 X 15703569..15703621 69..17 265 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:13:59 has no hits.

BO12562.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:32 Download gff for BO12562.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:32 Download gff for BO12562.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 145..820 17..692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:41 Download gff for BO12562.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..821 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:33 Download gff for BO12562.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 145..820 17..692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:25 Download gff for BO12562.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..821 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:25 Download gff for BO12562.complete
Subject Subject Range Query Range Percent Splice Strand
X 15702004..15702185 510..690 98 <- Minus
X 15702264..15702415 358..509 100 <- Minus
X 15702509..15702662 204..357 100 <- Minus
X 15703184..15703318 69..203 100 <- Minus
X 15703570..15703621 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:41 Download gff for BO12562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15596037..15596218 510..690 98 <- Minus
arm_X 15596297..15596448 358..509 100 <- Minus
arm_X 15596542..15596695 204..357 100 <- Minus
arm_X 15597217..15597351 69..203 100 <- Minus
arm_X 15597603..15597654 17..68 100   Minus

BO12562.pep Sequence

Translation from 16 to 706

> BO12562.pep
MTIAEHDNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLD
AVDGQAARAFNQSTRFGAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLS
IAIDVACHWLFMQTSVVVGRSSHKVNDNFIMRLYYQKDILTFMCCVNELF
YVCLYLLHFTYGPLIFGASLFKILAFLTGPFAVLKALISVMHAYVAGIDL
AAVDVRERQERRQKSEPVSGKKVEASFLDH

BO12562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-PA 224 CG9245-PA 1..224 1..224 1171 100 Plus
Pis-PB 81 CG9245-PB 1..63 1..63 324 98.4 Plus