Clone Sequence Records
BO12563.3prime Sequence
757 bp (680 high quality bases) assembled on 2006-05-08
> BO12563.3prime
ATGGTCTAGAAAGCTTGCGTAGCCGTAGGTGGCTCTGGTGTAGTATCCCG
CGTAGCCGTAGATCTGTTCATTTCTTGGCATGGGACGGCGTTTTACTCGC
ACCTCCACAAAGAGGTGGGCCACAAATACTGTTGCAAAGAAGGCCATCCA
CCCACCAAGGGCAGCTCCAGCTGCCACATCTGTTAAGTGGTTCTGGTAGG
TAGAGATGCGCTCCCAGCAAACCACCAAGGCCAGAGAGCAACAAGCCAGT
TGCAGGGAGGCTCGGACTAATCGCAGCCAGGGAGCAAACAATCTGGCCTG
GGAATAAAAAATCAGAAAGCCCATGGCGTAGCAAGTGGTGGACACGAATC
CGCTGGGGAAGGAGTGGCGCACCAGGGCGAGCAGATCCTGCGAGGCGGCG
AACTCCGTGCAACTGAAGTCCTCGAGGTAGAGGGTGGAGTTCTGCGCGGT
CACGTCGGAGCAGCTCTCGCCGCCCTCTGTTCCCCATGTGGGCTGGCAGA
TATCGAAGAAGTAGGGCCTCAGTCGGCCCGTCGAGTGCTTAGTCAGCCGA
ATCGCCGCCAAGGTCAGCCCCAGACCGAATAGGTAAACGCCAATGGCCTT
GTAGCATTCGCTGATGAATCTGGGGATGCGGACCCCGACGAAGACGAAGC
GCTGCGTCAGCTCCGTGGAGCTGGGTACCACCGGAGCCCTGAGCATCTCC
CCCACGAGCACAAATGCAGCGGGCAGAGCAACCACTGCGATCGTAAGGGG
GACCTTG
BO12563.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-PA | 918 | CG11437-RA | 177..915 | 757..19 | 3595 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-RA | 992 | CG11437-RA | 188..926 | 757..19 | 3635 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22469049..22469787 | 757..19 | 3635 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:29:55 has no hits.
BO12563.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:20 Download gff for
BO12563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-PA | 177..918 | 16..757 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:23 Download gff for
BO12563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-PA | 177..918 | 16..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:23 Download gff for
BO12563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 188..926 | 19..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:37 Download gff for
BO12563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 188..926 | 19..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:37 Download gff for
BO12563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22469049..22469787 | 19..757 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:23 Download gff for
BO12563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22462149..22462887 | 19..757 | 99 | | Minus |
BO12563.5prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-08
> BO12563.5prime
GAAGTTATCAGTCGACATGTGCGGCAATCCGAACACGCGTCTCCTCTCCC
GGCTGGTCATTGACTTCCTGATTCTCCTAGGAATCTATGGAGCGGCCCTA
GTGGTGCTGCCCCAGCAGTTGTCCACGGCCCAACGGGGATTCCACTGCAG
TGATACCAGCCTGAAGTATCCCTATCGCCAGCCCTGGCTGACCAAGGTCC
ACCTTACGATCGCAGTGGTTGCTCTGCCCGCTGCATTTGTGCTCGTGGTG
GAGATGCTCAGGGCTGCCGTGGTACCCAGCTCCACGGAGCTGACGCAGCG
CTTCGTCTTCGTCGGGGTCCGCATCCCCAGATTCATCAGCGAATGCTACA
AGGCCATTGGCGTTTACCTATTCGGTCTGGGGCTGACCTTGGCGGCGATT
CGGCTGACTAAGCACTCGACGGGCCGACTGAGGCCCTACTTCTTCGATAT
CTGCCAGCCCACATGGGGAACAGAGGGCGGCGAGAGCTGCTCCGACGTGA
CCGCGCAGAACTCCACCCTCTACCTCGAGGACTTCAGTTGCACGGAGTTC
GCCGCCTCGCAGGATCTGCTCGCCCTGGTGCGCCACTCCTTCCCCAGCGG
ATTCGTGTCCACCACTTGCTACGCCATGGGCTTTCTGATTTTTTATTCCC
AGGCCA
BO12563.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-PA | 918 | CG11437-RA | 1..640 | 17..656 | 3200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-RA | 992 | CG11437-RA | 12..651 | 17..656 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22468873..22469512 | 17..656 | 3200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:58:46 has no hits.
BO12563.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:21 Download gff for
BO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:24 Download gff for
BO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:36 Download gff for
BO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..650 | 8..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:32 Download gff for
BO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..650 | 8..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:32 Download gff for
BO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22468862..22469511 | 8..655 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:36 Download gff for
BO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22461962..22462611 | 8..655 | 99 | | Plus |
BO12563.complete Sequence
949 bp assembled on 2006-10-11
GenBank Submission: FJ632489
> BO12563.complete
GAAGTTATCAGTCGACATGTGCGGCAATCCGAACACGCGTCTCCTCTCCC
GGCTGGTCATTGACTTCCTGATTCTCCTAGGAATCTATGGAGCGGCCCTA
GTGGTGCTGCCCCAGCAGTTGTCCACGGCCCAACGGGGATTCCACTGCAG
TGATACCAGCCTGAAGTATCCCTATCGCCAGCCCTGGCTGACCAAGGTCC
ACCTTACGATCGCAGTGGTTGCTCTGCCCGCTGCATTTGTGCTCGTGGTG
GAGATGCTCAGGGCTGCCGTGGTACCCAGCTCCACGGAGCTGACGCAGCG
CTTCGTCTTCGTCGGGGTCCGCATCCCCAGATTCATCAGCGAATGCTACA
AGGCCATTGGCGTTTACCTATTCGGTCTGGGGCTGACCTTGGCGGCGATT
CGGCTGACTAAGCACTCGACGGGCCGACTGAGGCCCTACTTCTTCGATAT
CTGCCAGCCCACATGGGGAACAGAGGGCGGCGAGAGCTGCTCCGACGTGA
CCGCGCAGAACTCCACCCTCTACCTCGAGGACTTCAGTTGCACGGAGTTC
GCCGCCTCGCAGGATCTGCTCGCCCTGGTGCGCCACTCCTTCCCCAGCGG
ATTCGTGTCCACCACTTGCTACGCCATGGGCTTTCTGATTTTTTATTCCC
AGGCCAGATTGTTTGCTCCCTGGCTGCGATTAGTCCGAGCCTCCCTGCAA
CTGGCTTGTTGCTCTCTGGCCTTGGTGGTTTGCTGGGAGCGCATCTCTAC
CTACCAGAACCACTTAACAGATGTGGCAGCTGGAGCTGCCCTTGGTGGGT
GGATGGCCTTCTTTGCAACAGTATTTGTGGCCCACCTCTTTGTGGAGGTG
CGAGTAAAACGCCGTCCCATGCCAAGAAATGAACAGATCTACGGCTACGC
GGGATACTACACCAGAGCCACCTACGGCTACGCAAGCTTTCTAGACCAT
BO12563.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-RA | 918 | CG11437-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-RA | 992 | CG11437-RA | 12..926 | 17..931 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22468873..22469787 | 17..931 | 4575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:51:58 has no hits.
BO12563.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:34 Download gff for
BO12563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:34 Download gff for
BO12563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..924 | 10..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:02 Download gff for
BO12563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 12..926 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:34 Download gff for
BO12563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..924 | 10..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:37 Download gff for
BO12563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 12..926 | 17..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:37 Download gff for
BO12563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22468873..22469787 | 17..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:02 Download gff for
BO12563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22461973..22462887 | 17..933 | 99 | | Plus |
BO12563.pep Sequence
Translation from 16 to 949
> BO12563.pep
MCGNPNTRLLSRLVIDFLILLGIYGAALVVLPQQLSTAQRGFHCSDTSLK
YPYRQPWLTKVHLTIAVVALPAAFVLVVEMLRAAVVPSSTELTQRFVFVG
VRIPRFISECYKAIGVYLFGLGLTLAAIRLTKHSTGRLRPYFFDICQPTW
GTEGGESCSDVTAQNSTLYLEDFSCTEFAASQDLLALVRHSFPSGFVSTT
CYAMGFLIFYSQARLFAPWLRLVRASLQLACCSLALVVCWERISTYQNHL
TDVAAGAALGGWMAFFATVFVAHLFVEVRVKRRPMPRNEQIYGYAGYYTR
ATYGYASFLDH
BO12563.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-PA | 305 | CG11437-PA | 1..305 | 1..305 | 1595 | 100 | Plus |
| wun-PA | 300 | CG8804-PA | 4..277 | 6..281 | 384 | 33.3 | Plus |
| wun-PB | 379 | CG8804-PB | 83..356 | 6..281 | 384 | 33.3 | Plus |
| wun-PC | 364 | CG8804-PC | 83..335 | 6..260 | 369 | 34.1 | Plus |
| wun2-PA | 350 | CG8805-PA | 86..338 | 8..260 | 363 | 32.8 | Plus |
