Clone Sequence Records
BO12566.3prime Sequence
596 bp (595 high quality bases) assembled on 2006-05-08
> BO12566.3prime
ATGGTCTAGAAAGCTTGCGAAGGGCGCTCCATAGCTGCCGCTGGGCCTTG
AAGGGGCTCCATACGATCCGGATGGGGCGCTGGGATATCCACCGCCGCCA
CCTCCCTGCTGCGAGCTCTGCTGGGCGAACTGAGCCACCTGGATGGCCTG
GCGGACGCCTTCCAGGTCGATGCCCACGACACGGCCACCGCCTCCGATTC
CGGGGGCTCCGTAGCTGGTGGAAGGTGGACCGTAGCTGCTGGATGGGCCA
CTGGGGTAGCCACCACCGCCGCCACCACCGCCTCCACCACCACCGCCGCC
CTGCTTGCTCTCCTCGTTCAGCAGGATCTGGCGCACCTGCTCCAAAAGCT
GGGGATCCACGTTCTGGCCCTCGGACGTCTGGAAGCCGCCGCTCACAGCC
TGGTAGCCGCCGCCGCCACCACCGCCGCCACCTCCTAGTCCGCCTCCGAA
TCCGCCGCCGAAGCCACCTCCAAATCCGCCGCCACCACCACCTCCGCCGC
GGGGATAGTTATATCCGGATGGTGGCTCTGCTGCAGCAAGAGCGGCCAGC
GCGAACACTAAGAACACTGAGAAGGAGTTCATGTCGACTGATAACT
BO12566.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-PA | 567 | CG2150-RA | 1..564 | 582..19 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-RA | 1170 | CG2150-RA | 108..671 | 582..19 | 2820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31763803..31764349 | 19..565 | 2735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:45:35 has no hits.
BO12566.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:26 Download gff for
BO12566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-PA | 1..567 | 18..582 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:31 Download gff for
BO12566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-PA | 1..567 | 18..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:43 Download gff for
BO12566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 102..679 | 11..588 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:43 Download gff for
BO12566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 102..679 | 11..588 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:43 Download gff for
BO12566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31763795..31764348 | 11..564 | 99 | <- | Plus |
3R | 31764648..31764671 | 565..588 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:43 Download gff for
BO12566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27589517..27590070 | 11..564 | 99 | <- | Plus |
arm_3R | 27590370..27590393 | 565..588 | 92 | | Plus |
BO12566.5prime Sequence
596 bp (595 high quality bases) assembled on 2006-05-08
> BO12566.5prime
GAAGTTATCAGTCGACATGAACTCCTTCTCAGTGTTCTTAGTGTTCGCGC
TGGCCGCTCTTGCTGCAGCAGAGCCACCATCCGGATATAACTATCCCCGC
GGCGGAGGTGGTGGTGGCGGCGGATTTGGAGGTGGCTTCGGCGGCGGATT
CGGAGGCGGACTAGGAGGTGGCGGCGGTGGTGGCGGCGGCGGCTACCAGG
CTGTGAGCGGCGGCTTCCAGACGTCCGAGGGCCAGAACGTGGATCCCCAG
CTTTTGGAGCAGGTGCGCCAGATCCTGCTGAACGAGGAGAGCAAGCAGGG
CGGCGGTGGTGGTGGAGGCGGTGGTGGCGGCGGTGGTGGCTACCCCAGTG
GCCCATCCAGCAGCTACGGTCCACCTTCCACCAGCTACGGAGCCCCCGGA
ATCGGAGGCGGTGGCCGTGTCGTGGGCATCGACCTGGAAGGCGTCCGCCA
GGCCATCCAGGTGGCTCAGTTCGCCCAGCAGAGCTCGCAGCAGGGAGGTG
GCGGCGGTGGATATCCCAGCGCCCCATCCGGATCGTATGGAGCCCCTTCA
AGGCCCAGCGGCAGCTATGGAGCGCCCTTCGCAAGCTTTCTAGACC
BO12566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-PA | 567 | CG2150-RA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-RA | 1170 | CG2150-RA | 108..671 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31763803..31764349 | 580..34 | 2735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:18:20 has no hits.
BO12566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:27 Download gff for
BO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-PA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:33 Download gff for
BO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-PA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:43 Download gff for
BO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 102..679 | 11..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:51 Download gff for
BO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 102..679 | 11..588 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:51 Download gff for
BO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31763795..31764348 | 35..588 | 99 | <- | Minus |
3R | 31764648..31764671 | 11..34 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:43 Download gff for
BO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27589517..27590070 | 35..588 | 99 | <- | Minus |
arm_3R | 27590370..27590393 | 11..34 | 92 | | Minus |
BO12566.complete Sequence
598 bp assembled on 2006-10-11
GenBank Submission: FJ632490
> BO12566.complete
GAAGTTATCAGTCGACATGAACTCCTTCTCAGTGTTCTTAGTGTTCGCGC
TGGCCGCTCTTGCTGCAGCAGAGCCACCATCCGGATATAACTATCCCCGC
GGCGGAGGTGGTGGTGGCGGCGGATTTGGAGGTGGCTTCGGCGGCGGATT
CGGAGGCGGACTAGGAGGTGGCGGCGGTGGTGGCGGCGGCGGCTACCAGG
CTGTGAGCGGCGGCTTCCAGACGTCCGAGGGCCAGAACGTGGATCCCCAG
CTTTTGGAGCAGGTGCGCCAGATCCTGCTGAACGAGGAGAGCAAGCAGGG
CGGCGGTGGTGGTGGAGGCGGTGGTGGCGGCGGTGGTGGCTACCCCAGTG
GCCCATCCAGCAGCTACGGTCCACCTTCCACCAGCTACGGAGCCCCCGGA
ATCGGAGGCGGTGGCCGTGTCGTGGGCATCGACCTGGAAGGCGTCCGCCA
GGCCATCCAGGTGGCTCAGTTCGCCCAGCAGAGCTCGCAGCAGGGAGGTG
GCGGCGGTGGATATCCCAGCGCCCCATCCGGATCGTATGGAGCCCCTTCA
AGGCCCAGCGGCAGCTATGGAGCGCCCTTCGCAAGCTTTCTAGACCAT
BO12566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-RA | 567 | CG2150-PA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-RA | 1170 | CG2150-RA | 108..671 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31763803..31764349 | 580..34 | 2735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:49 has no hits.
BO12566.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:35 Download gff for
BO12566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:35 Download gff for
BO12566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 96..673 | 11..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:32 Download gff for
BO12566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 108..671 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:35 Download gff for
BO12566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 96..673 | 11..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:05 Download gff for
BO12566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 108..671 | 17..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:05 Download gff for
BO12566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31763801..31764348 | 35..582 | 99 | <- | Minus |
3R | 31764648..31764665 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:32 Download gff for
BO12566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27589523..27590070 | 35..582 | 99 | <- | Minus |
arm_3R | 27590370..27590387 | 17..34 | 100 | | Minus |
BO12566.pep Sequence
Translation from 16 to 598
> BO12566.pep
MNSFSVFLVFALAALAAAEPPSGYNYPRGGGGGGGGFGGGFGGGFGGGLG
GGGGGGGGGYQAVSGGFQTSEGQNVDPQLLEQVRQILLNEESKQGGGGGG
GGGGGGGGYPSGPSSSYGPPSTSYGAPGIGGGGRVVGIDLEGVRQAIQVA
QFAQQSSQQGGGGGGYPSAPSGSYGAPSRPSGSYGAPFASFLDH
BO12566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-PA | 188 | CG2150-PA | 1..188 | 1..188 | 1010 | 100 | Plus |
TwdlT-PA | 286 | CG5812-PA | 4..124 | 7..165 | 261 | 42.4 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 330..499 | 21..182 | 255 | 40.9 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 330..483 | 21..187 | 252 | 39.9 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 249..417 | 29..185 | 238 | 41.1 | Plus |
CG5172-PD | 172 | CG5172-PD | 24..169 | 29..182 | 235 | 40.4 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 234..417 | 20..185 | 232 | 38 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 364..533 | 14..187 | 219 | 37.2 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 427..600 | 11..185 | 219 | 38.4 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 431..589 | 21..185 | 213 | 40.1 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 395..564 | 21..189 | 210 | 38.3 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 224..367 | 11..189 | 208 | 37 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 224..367 | 11..189 | 208 | 37 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 422..572 | 28..187 | 204 | 35.7 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 29..130 | 11..123 | 188 | 42.1 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 29..130 | 11..123 | 188 | 42.1 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 8..141 | 8..193 | 170 | 33.2 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 8..141 | 8..193 | 170 | 33.2 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 479..588 | 14..134 | 161 | 42.6 | Plus |