Clone BO12566 Report

Search the DGRC for BO12566

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG2150-RA
Protein status:BO12566.pep: validated full length
Sequenced Size:598

Clone Sequence Records

BO12566.3prime Sequence

596 bp (595 high quality bases) assembled on 2006-05-08

> BO12566.3prime
ATGGTCTAGAAAGCTTGCGAAGGGCGCTCCATAGCTGCCGCTGGGCCTTG
AAGGGGCTCCATACGATCCGGATGGGGCGCTGGGATATCCACCGCCGCCA
CCTCCCTGCTGCGAGCTCTGCTGGGCGAACTGAGCCACCTGGATGGCCTG
GCGGACGCCTTCCAGGTCGATGCCCACGACACGGCCACCGCCTCCGATTC
CGGGGGCTCCGTAGCTGGTGGAAGGTGGACCGTAGCTGCTGGATGGGCCA
CTGGGGTAGCCACCACCGCCGCCACCACCGCCTCCACCACCACCGCCGCC
CTGCTTGCTCTCCTCGTTCAGCAGGATCTGGCGCACCTGCTCCAAAAGCT
GGGGATCCACGTTCTGGCCCTCGGACGTCTGGAAGCCGCCGCTCACAGCC
TGGTAGCCGCCGCCGCCACCACCGCCGCCACCTCCTAGTCCGCCTCCGAA
TCCGCCGCCGAAGCCACCTCCAAATCCGCCGCCACCACCACCTCCGCCGC
GGGGATAGTTATATCCGGATGGTGGCTCTGCTGCAGCAAGAGCGGCCAGC
GCGAACACTAAGAACACTGAGAAGGAGTTCATGTCGACTGATAACT

BO12566.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-PA 567 CG2150-RA 1..564 582..19 2820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-RA 1170 CG2150-RA 108..671 582..19 2820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31763803..31764349 19..565 2735 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:45:35 has no hits.

BO12566.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:26 Download gff for BO12566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-PA 1..567 18..582 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:31 Download gff for BO12566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-PA 1..567 18..582 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:43 Download gff for BO12566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 102..679 11..588 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:43 Download gff for BO12566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 102..679 11..588 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:43 Download gff for BO12566.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31763795..31764348 11..564 99 <- Plus
3R 31764648..31764671 565..588 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:43 Download gff for BO12566.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27589517..27590070 11..564 99 <- Plus
arm_3R 27590370..27590393 565..588 92   Plus

BO12566.5prime Sequence

596 bp (595 high quality bases) assembled on 2006-05-08

> BO12566.5prime
GAAGTTATCAGTCGACATGAACTCCTTCTCAGTGTTCTTAGTGTTCGCGC
TGGCCGCTCTTGCTGCAGCAGAGCCACCATCCGGATATAACTATCCCCGC
GGCGGAGGTGGTGGTGGCGGCGGATTTGGAGGTGGCTTCGGCGGCGGATT
CGGAGGCGGACTAGGAGGTGGCGGCGGTGGTGGCGGCGGCGGCTACCAGG
CTGTGAGCGGCGGCTTCCAGACGTCCGAGGGCCAGAACGTGGATCCCCAG
CTTTTGGAGCAGGTGCGCCAGATCCTGCTGAACGAGGAGAGCAAGCAGGG
CGGCGGTGGTGGTGGAGGCGGTGGTGGCGGCGGTGGTGGCTACCCCAGTG
GCCCATCCAGCAGCTACGGTCCACCTTCCACCAGCTACGGAGCCCCCGGA
ATCGGAGGCGGTGGCCGTGTCGTGGGCATCGACCTGGAAGGCGTCCGCCA
GGCCATCCAGGTGGCTCAGTTCGCCCAGCAGAGCTCGCAGCAGGGAGGTG
GCGGCGGTGGATATCCCAGCGCCCCATCCGGATCGTATGGAGCCCCTTCA
AGGCCCAGCGGCAGCTATGGAGCGCCCTTCGCAAGCTTTCTAGACC

BO12566.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-PA 567 CG2150-RA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-RA 1170 CG2150-RA 108..671 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31763803..31764349 580..34 2735 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:18:20 has no hits.

BO12566.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:27 Download gff for BO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-PA 1..567 17..581 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:33 Download gff for BO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-PA 1..567 17..581 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:43 Download gff for BO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 102..679 11..588 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:51 Download gff for BO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 102..679 11..588 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:51 Download gff for BO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31763795..31764348 35..588 99 <- Minus
3R 31764648..31764671 11..34 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:43 Download gff for BO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27589517..27590070 35..588 99 <- Minus
arm_3R 27590370..27590393 11..34 92   Minus

BO12566.complete Sequence

598 bp assembled on 2006-10-11

GenBank Submission: FJ632490

> BO12566.complete
GAAGTTATCAGTCGACATGAACTCCTTCTCAGTGTTCTTAGTGTTCGCGC
TGGCCGCTCTTGCTGCAGCAGAGCCACCATCCGGATATAACTATCCCCGC
GGCGGAGGTGGTGGTGGCGGCGGATTTGGAGGTGGCTTCGGCGGCGGATT
CGGAGGCGGACTAGGAGGTGGCGGCGGTGGTGGCGGCGGCGGCTACCAGG
CTGTGAGCGGCGGCTTCCAGACGTCCGAGGGCCAGAACGTGGATCCCCAG
CTTTTGGAGCAGGTGCGCCAGATCCTGCTGAACGAGGAGAGCAAGCAGGG
CGGCGGTGGTGGTGGAGGCGGTGGTGGCGGCGGTGGTGGCTACCCCAGTG
GCCCATCCAGCAGCTACGGTCCACCTTCCACCAGCTACGGAGCCCCCGGA
ATCGGAGGCGGTGGCCGTGTCGTGGGCATCGACCTGGAAGGCGTCCGCCA
GGCCATCCAGGTGGCTCAGTTCGCCCAGCAGAGCTCGCAGCAGGGAGGTG
GCGGCGGTGGATATCCCAGCGCCCCATCCGGATCGTATGGAGCCCCTTCA
AGGCCCAGCGGCAGCTATGGAGCGCCCTTCGCAAGCTTTCTAGACCAT

BO12566.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-RA 567 CG2150-PA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-RA 1170 CG2150-RA 108..671 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31763803..31764349 580..34 2735 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:19:49 has no hits.

BO12566.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:35 Download gff for BO12566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 1..567 17..581 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:35 Download gff for BO12566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 96..673 11..588 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:32 Download gff for BO12566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 108..671 17..582 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:35 Download gff for BO12566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 96..673 11..588 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:05 Download gff for BO12566.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 108..671 17..582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:05 Download gff for BO12566.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31763801..31764348 35..582 99 <- Minus
3R 31764648..31764665 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:32 Download gff for BO12566.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27589523..27590070 35..582 99 <- Minus
arm_3R 27590370..27590387 17..34 100   Minus

BO12566.pep Sequence

Translation from 16 to 598

> BO12566.pep
MNSFSVFLVFALAALAAAEPPSGYNYPRGGGGGGGGFGGGFGGGFGGGLG
GGGGGGGGGYQAVSGGFQTSEGQNVDPQLLEQVRQILLNEESKQGGGGGG
GGGGGGGGYPSGPSSSYGPPSTSYGAPGIGGGGRVVGIDLEGVRQAIQVA
QFAQQSSQQGGGGGGYPSAPSGSYGAPSRPSGSYGAPFASFLDH

BO12566.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-PA 188 CG2150-PA 1..188 1..188 1010 100 Plus
TwdlT-PA 286 CG5812-PA 4..124 7..165 261 42.4 Plus
Cpr47Ef-PC 612 CG13214-PC 330..499 21..182 255 40.9 Plus
Cpr47Ef-PD 601 CG13214-PD 330..483 21..187 252 39.9 Plus
Cpr47Ef-PC 612 CG13214-PC 249..417 29..185 238 41.1 Plus
CG5172-PD 172 CG5172-PD 24..169 29..182 235 40.4 Plus
Cpr47Ef-PD 601 CG13214-PD 234..417 20..185 232 38 Plus
Cpr47Ef-PC 612 CG13214-PC 364..533 14..187 219 37.2 Plus
Cpr47Ef-PC 612 CG13214-PC 427..600 11..185 219 38.4 Plus
Cpr47Ef-PD 601 CG13214-PD 431..589 21..185 213 40.1 Plus
Cpr47Ef-PC 612 CG13214-PC 395..564 21..189 210 38.3 Plus
Cpr47Ef-PC 612 CG13214-PC 224..367 11..189 208 37 Plus
Cpr47Ef-PD 601 CG13214-PD 224..367 11..189 208 37 Plus
Cpr47Ef-PC 612 CG13214-PC 422..572 28..187 204 35.7 Plus
Cpr47Ef-PC 612 CG13214-PC 29..130 11..123 188 42.1 Plus
Cpr47Ef-PD 601 CG13214-PD 29..130 11..123 188 42.1 Plus
Cpr47Ef-PC 612 CG13214-PC 8..141 8..193 170 33.2 Plus
Cpr47Ef-PD 601 CG13214-PD 8..141 8..193 170 33.2 Plus
Cpr47Ef-PD 601 CG13214-PD 479..588 14..134 161 42.6 Plus