Clone Sequence Records
BO12567.3prime Sequence
743 bp (742 high quality bases) assembled on 2006-05-08
> BO12567.3prime
ATGGTCTAGAAAGCTTGCCTTTTCAACAAAATCCTCGTTGGTGTTGTAAA
CTGGCTGCAGGCGTCTTGGATATTTACGCAAATATTCGGCAAAATGTTGG
GCATATTTGGCCTGGTAATCACGACGCCTCCAGGGCTGAGCGGGTTCATA
GAAATTCTCCTTATTATTGTACGTATTTAGATAGTTATTTGTGGCCAATG
AGCGACTGCCGCCAATTTGGACCACTTGCTCCTCATCGCGACCCGAATCG
CTGGTCTCCAATTCCGGATTCCTTTGTGGATATGGCTGAAGTTGAGGTGG
AATTTGAGATTGAGGATAGCGCAGAGGTGTTGATGGCGTAGTCTCCTGTT
GTTGATAGTAAAAGTAGCCGGGCACATTGTTATAGTTGTGATTGGGAGCA
TGTGTTGGGTCTTCCCTTCTCCAATTTGGATATGCTTGTCTATACGCAGG
TTCCGCAACATAATAACCATTACTTTTTGGATACTGCTGCTGTTCCTGGG
CACTGTACTGATTATCATTCACTATGATAGGCGGACCCGACCATATCGAT
TGTACATCTGGATTGGCATAGTTGGATTGAGCGTAGTTGGATGTGGTAAT
TGCATAAGCACTGCCATAAGGTGATGCATACTGAGCTCTCCCACAAACTG
CATCGATCATCAGGGGCATAAGTGCACATAGCCAGCTCGACGAGCTGCTC
TTCACGATCCGTCCTGTTTGCGGCTTCATGTCGACTGATAACT
BO12567.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14153-PA | 714 | CG14153-RA | 1..711 | 729..19 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14153-RA | 1022 | CG14153-RA | 7..726 | 737..19 | 3560 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10643656..10644319 | 682..19 | 3320 | 100 | Minus |
3L | 28110227 | 3L | 10643543..10643590 | 729..682 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:40:58 has no hits.
BO12567.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:28 Download gff for
BO12567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-PA | 1..714 | 18..729 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:34 Download gff for
BO12567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-PA | 1..714 | 18..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:02:33 Download gff for
BO12567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 1..726 | 19..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:18 Download gff for
BO12567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 1..726 | 19..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:18 Download gff for
BO12567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10643534..10643590 | 682..737 | 96 | -> | Minus |
3L | 10643657..10644319 | 19..681 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:02:33 Download gff for
BO12567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10636634..10636690 | 682..737 | 96 | -> | Minus |
arm_3L | 10636757..10637419 | 19..681 | 100 | | Minus |
BO12567.5prime Sequence
743 bp (742 high quality bases) assembled on 2006-05-08
> BO12567.5prime
GAAGTTATCAGTCGACATGAAGCCGCAAACAGGACGGATCGTGAAGAGCA
GCTCGTCGAGCTGGCTATGTGCACTTATGCCCCTGATGATCGATGCAGTT
TGTGGGAGAGCTCAGTATGCATCACCTTATGGCAGTGCTTATGCAATTAC
CACATCCAACTACGCTCAATCCAACTATGCCAATCCAGATGTACAATCGA
TATGGTCGGGTCCGCCTATCATAGTGAATGATAATCAGTACAGTGCCCAG
GAACAGCAGCAGTATCCAAAAAGTAATGGTTATTATGTTGCGGAACCTGC
GTATAGACAAGCATATCCAAATTGGAGAAGGGAAGACCCAACACATGCTC
CCAATCACAACTATAACAATGTGCCCGGCTACTTTTACTATCAACAACAG
GAGACTACGCCATCAACACCTCTGCGCTATCCTCAATCTCAAATTCCACC
TCAACTTCAGCCATATCCACAAAGGAATCCGGAATTGGAGACCAGCGATT
CGGGTCGCGATGAGGAGCAAGTGGTCCAAATTGGCGGCAGTCGCTCATTG
GCCACAAATAACTATCTAAATACGTACAATAATAAGGAGAATTTCTATGA
ACCCGCTCAGCCCTGGAGGCGTCGTGATTACCAGGCCAAATATGCCCAAC
ATTTTGCCGAATATTTGCGTAAATATCCAAGACGCCTGCAGCCAGTTTAC
AACACCAACGAGGATTTTGTTGAAAAGGCAAGCTTTCTAGACC
BO12567.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14153-PA | 714 | CG14153-RA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14153-RA | 1022 | CG14153-RA | 7..726 | 9..727 | 3560 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10643656..10644319 | 64..727 | 3320 | 100 | Plus |
3L | 28110227 | 3L | 10643543..10643590 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:28:09 has no hits.
BO12567.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:29 Download gff for
BO12567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-PA | 1..714 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:35 Download gff for
BO12567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-PA | 1..714 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:22:15 Download gff for
BO12567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 1..726 | 5..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:46 Download gff for
BO12567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 1..726 | 5..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:46 Download gff for
BO12567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10643534..10643590 | 9..64 | 96 | -> | Plus |
3L | 10643657..10644319 | 65..727 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:22:15 Download gff for
BO12567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10636634..10636690 | 9..64 | 96 | -> | Plus |
arm_3L | 10636757..10637419 | 65..727 | 100 | | Plus |
BO12567.complete Sequence
745 bp assembled on 2006-10-11
GenBank Submission: FJ632491
> BO12567.complete
GAAGTTATCAGTCGACATGAAGCCGCAAACAGGACGGATCGTGAAGAGCA
GCTCGTCGAGCTGGCTATGTGCACTTATGCCCCTGATGATCGATGCAGTT
TGTGGGAGAGCTCAGTATGCATCACCTTATGGCAGTGCTTATGCAATTAC
CACATCCAACTACGCTCAATCCAACTATGCCAATCCAGATGTACAATCGA
TATGGTCGGGTCCGCCTATCATAGTGAATGATAATCAGTACAGTGCCCAG
GAACAGCAGCAGTATCCAAAAAGTAATGGTTATTATGTTGCGGAACCTGC
GTATAGACAAGCATATCCAAATTGGAGAAGGGAAGACCCAACACATGCTC
CCAATCACAACTATAACAATGTGCCCGGCTACTTTTACTATCAACAACAG
GAGACTACGCCATCAACACCTCTGCGCTATCCTCAATCTCAAATTCCACC
TCAACTTCAGCCATATCCACAAAGGAATCCGGAATTGGAGACCAGCGATT
CGGGTCGCGATGAGGAGCAAGTGGTCCAAATTGGCGGCAGTCGCTCATTG
GCCACAAATAACTATCTAAATACGTACAATAATAAGGAGAATTTCTATGA
ACCCGCTCAGCCCTGGAGGCGTCGTGATTACCAGGCCAAATATGCCCAAC
ATTTTGCCGAATATTTGCGTAAATATCCAAGACGCCTGCAGCCAGTTTAC
AACACCAACGAGGATTTTGTTGAAAAGGCAAGCTTTCTAGACCAT
BO12567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14153-RA | 714 | CG14153-PA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14153-RA | 1022 | CG14153-RA | 16..726 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10643656..10644319 | 64..727 | 3320 | 100 | Plus |
3L | 28110227 | 3L | 10643543..10643590 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:43:59 has no hits.
BO12567.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:35 Download gff for
BO12567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 1..714 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:37 Download gff for
BO12567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 2..721 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:21 Download gff for
BO12567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 16..726 | 17..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:36 Download gff for
BO12567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 2..721 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:08 Download gff for
BO12567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14153-RA | 16..726 | 17..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:08 Download gff for
BO12567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10643543..10643590 | 17..64 | 100 | -> | Plus |
3L | 10643657..10644319 | 65..729 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:21 Download gff for
BO12567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10636643..10636690 | 17..64 | 100 | -> | Plus |
arm_3L | 10636757..10637419 | 65..729 | 99 | | Plus |
BO12567.pep Sequence
Translation from 16 to 745
> BO12567.pep
MKPQTGRIVKSSSSSWLCALMPLMIDAVCGRAQYASPYGSAYAITTSNYA
QSNYANPDVQSIWSGPPIIVNDNQYSAQEQQQYPKSNGYYVAEPAYRQAY
PNWRREDPTHAPNHNYNNVPGYFYYQQQETTPSTPLRYPQSQIPPQLQPY
PQRNPELETSDSGRDEEQVVQIGGSRSLATNNYLNTYNNKENFYEPAQPW
RRRDYQAKYAQHFAEYLRKYPRRLQPVYNTNEDFVEKASFLDH
BO12567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14153-PA | 237 | CG14153-PA | 1..237 | 1..237 | 1300 | 100 | Plus |