Clone Sequence Records
BO12568.3prime Sequence
923 bp (785 high quality bases) assembled on 2006-05-08
> BO12568.3prime
ATGGTCTAGAAAGCTTGCGTTATTTTCTTCTATGCTCTTTGACATGTAGG
GTCCGTCAAGTTGGTATCCCATTTTGCGATAGTAGTTTCTGGTGCCCACT
CCCGATATGACCGCCAGTTTTGTGCTGCCGTGCTCCTCTCGAGCAATTCG
CTCCGCCTCCTCCATCAGCAACATACCGAAGCCCTGGTGCTGAAACTTGG
TGGGATCCCTAGCATTAACCGGCACGACTGAGCCATATACGTGCAGCTCC
CTCACAATGGAGCATTCGCCCTTCAGTTCCGGGCGGAAGGTATCCGGTGA
GCACTTTCGCAGCCTAAGAAGGCCTACGAGAATGTCCTGTTCAGGATCTT
CGTATGAGAGGAACGTTTCCCAGCCGCCATTGGCCACATAGTCCCGACGA
ATTAGCTCAATTTCGTAAGGGCGCACCTTGTTGTGGATTTCCTGAATGCC
AACTTCGCGGGTTCTAACATCGCGGCAAGTGGTTCCAAGATCCTTCATGC
GGGCCAGCGCCAGTTCACGGAGATTTCCGTGTTCCACGCCGGAACTAACA
AGCGGCATGGGAATGTCGCGCTGTACGCGGTACACTCGCGTCCATGGTGG
TACAAGGGCCAAAATCTTCGCCACTAAGTCCACAAGCATGGATGGCGGAT
ATGACTTATATCGCCCGGTTTTCCATAACTCGTAGAGACCAGTGCCGCGA
ATGACGAGCGTGGGATAGATCTTTAGGCCGTCAGAGCGGAAGGCAGGGTT
CTCAAAGTACTCGATAAACTGCTCGATGTCGCGTTCAAAGTCAACATTGG
GAAGATCAGGCATCATGTGCGTCACGATCTTATAGCCAGCATCCTTGCCC
AGCTGGAAGCTCTCGCACACCGCTCGCACCGTGTGTCCGCGGTTCGTATC
CCTGGGCACGTCTTCGTAAACCG
BO12568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15433-PA | 1659 | CG15433-RA | 752..1656 | 923..19 | 4500 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-RA | 1863 | CG15433-RA | 831..1735 | 923..19 | 4510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4446108..4446637 | 548..19 | 2650 | 100 | Minus |
| 2L | 23513712 | 2L | 4445680..4446058 | 923..545 | 1880 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:22:14 has no hits.
BO12568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:30 Download gff for
BO12568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15433-PA | 752..1659 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:37 Download gff for
BO12568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15433-PA | 752..1659 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:32 Download gff for
BO12568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 831..1735 | 19..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:58 Download gff for
BO12568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 831..1735 | 19..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:58 Download gff for
BO12568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4445680..4446058 | 545..923 | 99 | -> | Minus |
| 2L | 4446112..4446637 | 19..544 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:32 Download gff for
BO12568.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4445680..4446058 | 545..923 | 99 | -> | Minus |
| arm_2L | 4446112..4446637 | 19..544 | 100 | | Minus |
BO12568.5prime Sequence
938 bp (859 high quality bases) assembled on 2006-05-08
> BO12568.5prime
GAAGTTATCAGTCGACATGAAGGCAAAAAAGAAGTTGGGCGTGGGATTGA
GCCGCCAGGAACGACAGGTGCTCGTCATCGGGGAGATCATTCAGGAGCTG
CTGAAGGCGCACGAAGCCAAAAAGGATGTAAACCTTAATCGGATGAAATC
ATTGGTGGCCTCCAAATATGGACTGGACAGTTCGCCGCGCCTGGTCGACA
TAATTGCTGCCGTGCCGCAGGACGCCAAAAAAATTCTGCTTCCAAAGCTG
AGGGCAAAGCCCATTCGCACAGCAAGTGGCATCGCCGTGGTCGCCGTCAT
GTGCAAGCCGCATCGTTGTCCGCACATCAATATGACCGGCAATATATGCG
TCTATTGTCCCGGCGGACCGGACAGCGACTTTGAGTACTCGACACAGTCG
TACACAGGCTACGAGCCGACCTCGATGCGAGCCATCCGGTCGCGGTACGA
TCCTTTTCTTCAGACCCGACACCGCGTTGAACAGCTGAAGCAGCTGGGAC
ACAGTGTGGACAAGGTGGAGTTCATCGTAATGGGCGGTACGTTCATGTGC
CTGCCGGAGGAGTACCGCGACTACTTTATCCGCAACCTACACGACGCCCT
CTCCGGCCACAGCAGCGCCAATGTGGCGGAAGCCGTACGCTACTCGGAGA
AGTCACGCACAAAGTGCATTGGCATCACCATAGAAACAAGGCCAGATTAC
TGCCTAAAGCGGCACATATCGGATATGCTTAGCTATGGTTGCACCCGGCT
GGAAATCGGTGTGCAATCGGTTTACGAAGACGTGGCCAGGGATACGAACC
GCGGACACACGGTGCGAGCGGTGTGCGAGAGCTTCCAGCTGGGCAAGGAT
GCTGGCTATAAGATCGTGACGCACATGATGCCTGATCTTCCCAATGTTGA
CTTTGAACGCGACATCGAGCAGTTTATCGAGTACTTTG
BO12568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15433-PA | 1659 | CG15433-RA | 1..922 | 17..938 | 4610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-RA | 1863 | CG15433-RA | 80..1001 | 17..938 | 4610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4445193..4445850 | 281..938 | 3290 | 100 | Plus |
| 2L | 23513712 | 2L | 4444894..4445136 | 38..280 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:23:37 has no hits.
BO12568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:31 Download gff for
BO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15433-PA | 1..922 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:38 Download gff for
BO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15433-PA | 1..922 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:40 Download gff for
BO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 71..1001 | 7..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:47 Download gff for
BO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 71..1001 | 7..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:47 Download gff for
BO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4444895..4445136 | 39..280 | 100 | -> | Plus |
| 2L | 4445193..4445850 | 281..938 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:40 Download gff for
BO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4444895..4445136 | 39..280 | 100 | -> | Plus |
| arm_2L | 4445193..4445850 | 281..938 | 100 | | Plus |
BO12568.complete Sequence
1690 bp assembled on 2006-10-11
GenBank Submission: FJ632492
> BO12568.complete
GAAGTTATCAGTCGACATGAAGGCAAAAAAGAAGTTGGGCGTGGGATTGA
GCCGCCAGGAACGACAGGTGCTCGTCATCGGGGAGATCATTCAGGAGCTG
CTGAAGGCGCACGAAGCCAAAAAGGATGTAAACCTTAATCGGATGAAATC
ATTGGTGGCCTCCAAATATGGACTGGACAGTTCGCCGCGCCTGGTCGACA
TAATTGCTGCCGTGCCGCAGGACGCCAAAAAAATTCTGCTTCCAAAGCTG
AGGGCAAAGCCCATTCGCACAGCAAGTGGCATCGCCGTGGTCGCCGTCAT
GTGCAAGCCGCATCGTTGTCCGCACATCAATATGACCGGCAATATATGCG
TCTATTGTCCCGGCGGACCGGACAGCGACTTTGAGTACTCGACACAGTCG
TACACAGGCTACGAGCCGACCTCGATGCGAGCCATCCGGTCGCGGTACGA
TCCTTTTCTTCAGACCCGACACCGCGTTGAACAGCTGAAGCAGCTGGGAC
ACAGTGTGGACAAGGTGGAGTTCATCGTAATGGGCGGTACGTTCATGTGC
CTGCCGGAGGAGTACCGCGACTACTTTATCCGCAACCTACACGACGCCCT
CTCCGGCCACAGCAGCGCCAATGTGGCGGAAGCCGTACGCTACTCGGAGA
AGTCACGCACAAAGTGCATTGGCATCACCATAGAAACAAGGCCAGATTAC
TGCCTAAAGCGGCACATATCGGATATGCTTAGCTATGGTTGCACCCGGCT
GGAAATCGGTGTGCAATCGGTTTACGAAGACGTGGCCAGGGATACGAACC
GCGGACACACGGTGCGAGCGGTGTGCGAGAGCTTCCAGCTGGGCAAGGAT
GCTGGCTATAAGATCGTGACGCACATGATGCCTGATCTTCCCAATGTTGA
CTTTGAACGCGACATCGAGCAGTTTATCGAGTACTTTGAGAACCCTGCCT
TCCGCTCTGACGGCCTAAAGATCTATCCCACGCTCGTCATTCGCGGCACT
GGTCTCTACGAGTTATGGAAAACCGGGCGATATAAGTCATATCCGCCATC
CATGCTTGTGGACTTAGTGGCGAAGATTTTGGCCCTTGTACCACCATGGA
CGCGAGTGTACCGCGTACAGCGCGACATTCCCATGCCGCTTGTTAGTTCC
GGCGTGGAACACGGAAATCTCCGTGAACTGGCGCTGGCCCGCATGAAGGA
TCTTGGAACCACTTGCCGCGATGTTAGAACCCGCGAAGTTGGCATTCAGG
AAATCCACAACAAGGTGCGCCCTTACGAAATTGAGCTAATTCGTCGGGAC
TATGTGGCCAATGGCGGCTGGGAAACGTTCCTCTCATACGAAGATCCTGA
ACAGGACATTCTCGTAGGCCTTCTTAGGCTGCGAAAGTGCTCACCGGATA
CCTTCCGCCCGGAACTGAAGGGCGAATGCTCCATTGTGAGGGAGCTGCAC
GTATATGGCTCAGTCGTGCCGGTTAATGCTAGGGATCCCACCAAGTTTCA
GCACCAGGGCTTCGGTATGTTGCTGATGGAGGAGGCGGAGCGAATTGCTC
GAGAGGAGCACGGCAGCACAAAACTGGCGGTCATATCGGGAGTGGGCACC
AGAAACTACTATCGCAAAATGGGATACCAACTTGACGGACCCTACATGTC
AAAGAGCATAGAAGAAAATAACGCAAGCTTTCTAGACCAT
BO12568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-RA | 1659 | CG15433-PA | 1..1656 | 17..1672 | 8280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-RA | 1863 | CG15433-RA | 80..1735 | 17..1672 | 8280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4445193..4446058 | 281..1146 | 4330 | 100 | Plus |
| 2L | 23513712 | 2L | 4446108..4446637 | 1143..1672 | 2650 | 100 | Plus |
| 2L | 23513712 | 2L | 4444894..4445136 | 38..280 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:43:45 has no hits.
BO12568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:18 Download gff for
BO12568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 1..1659 | 17..1673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:14 Download gff for
BO12568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 71..1735 | 7..1672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:32 Download gff for
BO12568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 80..1724 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:18 Download gff for
BO12568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 71..1735 | 7..1672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:46 Download gff for
BO12568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 80..1724 | 17..1661 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:46 Download gff for
BO12568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4445193..4446058 | 281..1146 | 100 | -> | Plus |
| 2L | 4444811..4444832 | 17..38 | 100 | -> | Plus |
| 2L | 4444895..4445136 | 39..280 | 100 | -> | Plus |
| 2L | 4446112..4446626 | 1147..1661 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:32 Download gff for
BO12568.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4444811..4444832 | 17..38 | 100 | -> | Plus |
| arm_2L | 4444895..4445136 | 39..280 | 100 | -> | Plus |
| arm_2L | 4445193..4446058 | 281..1146 | 100 | -> | Plus |
| arm_2L | 4446112..4446626 | 1147..1661 | 100 | | Plus |
BO12568.pep Sequence
Translation from 16 to 1690
> BO12568.pep
MKAKKKLGVGLSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASK
YGLDSSPRLVDIIAAVPQDAKKILLPKLRAKPIRTASGIAVVAVMCKPHR
CPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRSRYDPFLQT
RHRVEQLKQLGHSVDKVEFIVMGGTFMCLPEEYRDYFIRNLHDALSGHSS
ANVAEAVRYSEKSRTKCIGITIETRPDYCLKRHISDMLSYGCTRLEIGVQ
SVYEDVARDTNRGHTVRAVCESFQLGKDAGYKIVTHMMPDLPNVDFERDI
EQFIEYFENPAFRSDGLKIYPTLVIRGTGLYELWKTGRYKSYPPSMLVDL
VAKILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTTC
RDVRTREVGIQEIHNKVRPYEIELIRRDYVANGGWETFLSYEDPEQDILV
GLLRLRKCSPDTFRPELKGECSIVRELHVYGSVVPVNARDPTKFQHQGFG
MLLMEEAERIAREEHGSTKLAVISGVGTRNYYRKMGYQLDGPYMSKSIEE
NNASFLDH
BO12568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-PA | 552 | CG15433-PA | 1..552 | 1..552 | 2892 | 100 | Plus |
