Clone Sequence Records
BO12569.3prime Sequence
716 bp (715 high quality bases) assembled on 2006-05-08
> BO12569.3prime
ATGGTCTAGAAAGCTTGCTTGCCTGGATGGGCGTCTGAAAGGCGCATTGA
CTATCAGGCGAGATGGCCGTGGGCGAAAAGGAATGTGGCGATCCACGAAG
GGCAAAGCCTGCGGAGTCGATGGGAACACTGGAGTAGGCCTAATAGCATT
CACAATCTTGACCGCATCTGGCCGACGACGAACCGTAAGCTTAGCCGGCC
GTCGCTGCGGAGTCCGCAGAACCGGACGCTGCGGGCGGAAGGCAGAAAGT
CGGTTCAGAAGCGGCAGAACATACTGAGCCTGGGGTGGTAGCGGCAGACT
TGCCAAATTAATTATAGCTGCGCTTTGTGGCAATGTGTTGGAGCTGTCAT
CATTGGCTGGCTGGTCTGGAGGTCCGTAGGTCTGATCGGGAGGTCCATAA
ATTTGGTCCGGTGGGCCGTAGACCTCAGCTGGCGCTTCCACCAAAGACGG
TGGTCCGTATGTTTCAGGTGGAGGGCCATATGTATCCTCCGGTTGAGGAA
ATTCAACCGCCTCCTCCGTTGGCAGGTCGAATGGCGGATCGGGGACCAGG
CCTGCTGGTGGATATGGGGCTTGTTCCTGTCTTTGCAGAAACCTTCCCGC
CGCGGGTCCTGGGAACCTCAGATGACTGCCTTCAATTCCATTCAGGCAAA
GAATGGAACAAAGCGCAAAGGTGACCAGAGAAGCACTTGGATAACCGGAC
ATGTCGACTGATAACT
BO12569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14570-PA | 687 | CG14570-RA | 1..684 | 702..19 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14570-RA | 780 | CG14570-RA | 27..710 | 702..19 | 3420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21729745..21730428 | 19..702 | 3420 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:12:27 has no hits.
BO12569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:32 Download gff for
BO12569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-PA | 1..687 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:40 Download gff for
BO12569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-PA | 1..687 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:16 Download gff for
BO12569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 18..710 | 19..710 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:35 Download gff for
BO12569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 18..710 | 19..710 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:35 Download gff for
BO12569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21729745..21730426 | 19..700 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:16 Download gff for
BO12569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21722845..21723526 | 19..700 | 100 | -> | Plus |
BO12569.5prime Sequence
716 bp (715 high quality bases) assembled on 2006-05-08
> BO12569.5prime
GAAGTTATCAGTCGACATGTCCGGTTATCCAAGTGCTTCTCTGGTCACCT
TTGCGCTTTGTTCCATTCTTTGCCTGAATGGAATTGAAGGCAGTCATCTG
AGGTTCCCAGGACCCGCGGCGGGAAGGTTTCTGCAAAGACAGGAACAAGC
CCCATATCCACCAGCAGGCCTGGTCCCCGATCCGCCATTCGACCTGCCAA
CGGAGGAGGCGGTTGAATTTCCTCAACCGGAGGATACATATGGCCCTCCA
CCTGAAACATACGGACCACCGTCTTTGGTGGAAGCGCCAGCTGAGGTCTA
CGGCCCACCGGACCAAATTTATGGACCTCCCGATCAGACCTACGGACCTC
CAGACCAGCCAGCCAATGATGACAGCTCCAACACATTGCCACAAAGCGCA
GCTATAATTAATTTGGCAAGTCTGCCGCTACCACCCCAGGCTCAGTATGT
TCTGCCGCTTCTGAACCGACTTTCTGCCTTCCGCCCGCAGCGTCCGGTTC
TGCGGACTCCGCAGCGACGGCCGGCTAAGCTTACGGTTCGTCGTCGGCCA
GATGCGGTCAAGATTGTGAATGCTATTAGGCCTACTCCAGTGTTCCCATC
GACTCCGCAGGCTTTGCCCTTCGTGGATCGCCACATTCCTTTTCGCCCAC
GGCCATCTCGCCTGATAGTCAATGCGCCTTTCAGACGCCCATCCAGGCAA
GCAAGCTTTCTAGACC
BO12569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14570-PA | 687 | CG14570-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14570-RA | 780 | CG14570-RA | 27..710 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21729745..21730428 | 700..17 | 3420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:12:20 has no hits.
BO12569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:33 Download gff for
BO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-PA | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:41 Download gff for
BO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-PA | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:53 Download gff for
BO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 18..710 | 9..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:14 Download gff for
BO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 18..710 | 9..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:14 Download gff for
BO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21868224..21868241 | 1..18 | 94 | | Minus |
| 3L | 21729745..21730426 | 19..700 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:53 Download gff for
BO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21722845..21723526 | 19..700 | 100 | -> | Minus |
| arm_3L | 21861324..21861341 | 1..18 | 94 | | Minus |
BO12569.complete Sequence
718 bp assembled on 2006-10-11
GenBank Submission: FJ632493
> BO12569.complete
GAAGTTATCAGTCGACATGTCCGGTTATCCAAGTGCTTCTCTGGTCACCT
TTGCGCTTTGTTCCATTCTTTGCCTGAATGGAATTGAAGGCAGTCATCTG
AGGTTCCCAGGACCCGCGGCGGGAAGGTTTCTGCAAAGACAGGAACAAGC
CCCATATCCACCAGCAGGCCTGGTCCCCGATCCGCCATTCGACCTGCCAA
CGGAGGAGGCGGTTGAATTTCCTCAACCGGAGGATACATATGGCCCTCCA
CCTGAAACATACGGACCACCGTCTTTGGTGGAAGCGCCAGCTGAGGTCTA
CGGCCCACCGGACCAAATTTATGGACCTCCCGATCAGACCTACGGACCTC
CAGACCAGCCAGCCAATGATGACAGCTCCAACACATTGCCACAAAGCGCA
GCTATAATTAATTTGGCAAGTCTGCCGCTACCACCCCAGGCTCAGTATGT
TCTGCCGCTTCTGAACCGACTTTCTGCCTTCCGCCCGCAGCGTCCGGTTC
TGCGGACTCCGCAGCGACGGCCGGCTAAGCTTACGGTTCGTCGTCGGCCA
GATGCGGTCAAGATTGTGAATGCTATTAGGCCTACTCCAGTGTTCCCATC
GACTCCGCAGGCTTTGCCCTTCGTGGATCGCCACATTCCTTTTCGCCCAC
GGCCATCTCGCCTGATAGTCAATGCGCCTTTCAGACGCCCATCCAGGCAA
GCAAGCTTTCTAGACCAT
BO12569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14570-RA | 687 | CG14570-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14570-RA | 780 | CG14570-RA | 27..710 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21729745..21730428 | 700..17 | 3420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:02:27 has no hits.
BO12569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:21 Download gff for
BO12569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:57 Download gff for
BO12569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 22..705 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:33 Download gff for
BO12569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 27..710 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:21 Download gff for
BO12569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 13..705 | 9..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:38 Download gff for
BO12569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14570-RA | 27..710 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:38 Download gff for
BO12569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21729743..21730428 | 17..702 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:33 Download gff for
BO12569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21722843..21723528 | 17..702 | 99 | | Minus |
BO12569.pep Sequence
Translation from 16 to 718
> BO12569.pep
MSGYPSASLVTFALCSILCLNGIEGSHLRFPGPAAGRFLQRQEQAPYPPA
GLVPDPPFDLPTEEAVEFPQPEDTYGPPPETYGPPSLVEAPAEVYGPPDQ
IYGPPDQTYGPPDQPANDDSSNTLPQSAAIINLASLPLPPQAQYVLPLLN
RLSAFRPQRPVLRTPQRRPAKLTVRRRPDAVKIVNAIRPTPVFPSTPQAL
PFVDRHIPFRPRPSRLIVNAPFRRPSRQASFLDH
BO12569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14570-PA | 228 | CG14570-PA | 1..228 | 1..228 | 1221 | 100 | Plus |
| CG14568-PA | 171 | CG14568-PA | 6..159 | 14..166 | 199 | 33.7 | Plus |
| CG14569-PA | 195 | CG14569-PA | 4..111 | 5..127 | 183 | 36.1 | Plus |
