Clone Sequence Records
BO12571.3prime Sequence
870 bp (823 high quality bases) assembled on 2006-05-08
> BO12571.3prime
ATGGTCTAGAAAGCTTGCTGTGAGGGCGGCGGCACCGGAGATGATTTCAA
TCAGCTCGCGAGTGATGACCGCCTGTCGGGTACGGTTGAAGGTGAGGGTC
AGCTTGTCGATCATCTCACCGGCGTTCTTGGAAGCGTTGTCCATGGCAGT
CATACGGGAGGACTGCTCCGAGCAGGCGCCCTCCTTCATGGTGTAGAAGA
TGAGCGAGGCCAGCGAGAACTCCAGATAGCTCTTGACCACGTCGCTGTCG
AGCGAGTCGTAGACGGCAAGCTTCTCCGACTTCTCCACGGTGGATCCGCT
GAAGATGGGGAGGGTGGAGCACTGGTAGGACACCACCGACTTGAAACGGT
TGTACACGATCTTGCCCTCGGTGTAATCGTAACCGGTCTGCAGAACCTCG
TTGGCAATCTTCGAGGCGTCCAGGAAAGTGGGGGGCAGTCGGCCCACCTC
GTTGGCCACCATCAGGATGTTCTTGCCGTACAGACGGGACAGAATCGCGC
GCGACTTGTCGCCCACGCAGAACACCTTAGTGTTGGCCTCGTCCTGGGCC
AGTTCGCCGCGAATGAGACGGGCCACACCAGTGTGGACGGCACCGCAAAG
ACCACGGTCCGAAGTCACTGCGATGAGCAGCTTCTTGGGCTCCGCCTTCT
CGTCCGGCTGGATCTCCGTCTTCTCGAAGAACTGCTGGGCGCCGATGCCG
TAAGGACGAGCCGCCTTCAAGTCTCGCTCGGCACGAGCGTACTTGGCAGC
GGACACCATCTTCATCGATTGCGTAATTTTCTGAATGTTCTTCACCGACT
TCAGGCGGATGGAAATCATCTTCAGGGTGGCCATGCCACGCTGCTGCTGG
GCCAGCATGGTGGCCTCCAT
BO12571.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7610-PA | 894 | ATPsyn-gamma-RA | 40..891 | 870..19 | 4235 | 99.8 | Minus |
CG7610-PB | 894 | ATPsyn-gamma-RB | 40..891 | 870..19 | 4235 | 99.8 | Minus |
CG7610-PC | 894 | ATPsyn-gamma-RC | 40..891 | 870..19 | 4235 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-RC | 1166 | CG7610-RC | 162..1013 | 870..19 | 4245 | 99.9 | Minus |
ATPsyn-gamma-RB | 1395 | CG7610-RB | 402..1253 | 870..19 | 4245 | 99.9 | Minus |
ATPsyn-gamma-RA | 1080 | CG7610-RA | 87..938 | 870..19 | 4245 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29747857..29748708 | 19..870 | 4245 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:41:24 has no hits.
BO12571.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:37 Download gff for
BO12571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7610-PC | 40..894 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:47 Download gff for
BO12571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7610-PC | 40..894 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:50 Download gff for
BO12571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 87..943 | 13..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:51 Download gff for
BO12571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 87..943 | 13..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:51 Download gff for
BO12571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29747852..29748708 | 13..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:50 Download gff for
BO12571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25573574..25574430 | 13..870 | 99 | | Plus |
BO12571.5prime Sequence
889 bp (842 high quality bases) assembled on 2006-05-08
> BO12571.5prime
GAAGTTATCAGTCGACATGATGATGCAACGCACCCAGCTCCTGCTGCCCC
TGGCCATGGAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACC
CTGAAGATGATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAAT
TACGCAATCGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGC
GAGACTTGAAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTC
GAGAAGACGGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCT
CATCGCAGTGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTG
TGGCCCGTCTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAG
GTGTTCTGCGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGG
CAAGAACATCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTT
TCCTGGACGCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGAT
TACACCGAGGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTA
CCAGTGCTCCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGG
AGAAGCTTGCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTAT
CTGGAGTTCTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGC
CTGCTCGGAGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGA
ACGCCGGTGAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGA
CAGGCGGTCATCACTCGCGAGCTGATTGAATCATCTCCG
BO12571.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7610-PA | 894 | ATPsyn-gamma-RA | 1..864 | 17..880 | 4295 | 99.8 | Plus |
CG7610-PB | 894 | ATPsyn-gamma-RB | 1..864 | 17..880 | 4295 | 99.8 | Plus |
CG7610-PC | 894 | ATPsyn-gamma-RC | 1..864 | 17..880 | 4295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-RC | 1166 | CG7610-RC | 123..996 | 17..889 | 4330 | 99.8 | Plus |
ATPsyn-gamma-RB | 1395 | CG7610-RB | 363..1236 | 17..889 | 4330 | 99.8 | Plus |
ATPsyn-gamma-RA | 1080 | CG7610-RA | 48..921 | 17..889 | 4330 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29747884..29748747 | 880..17 | 4305 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:00:48 has no hits.
BO12571.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:38 Download gff for
BO12571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7610-PC | 1..874 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:49 Download gff for
BO12571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7610-PC | 1..874 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:59 Download gff for
BO12571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 45..921 | 10..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:21 Download gff for
BO12571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 45..921 | 10..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:21 Download gff for
BO12571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29747874..29748745 | 19..889 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:59 Download gff for
BO12571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25573596..25574467 | 19..889 | 99 | -> | Minus |
BO12571.complete Sequence
925 bp assembled on 2006-10-11
GenBank Submission: FJ638703
> BO12571.complete
GAAGTTATCAGTCGACATGATGATGCAACGCACCCAGCTCCTGCTGCCCC
TGGCCATGGAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACC
CTGAAGATGATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAAT
TACGCAATCGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGC
GAGACTTGAAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTC
GAGAAGACGGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCT
CATCGCAGTGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTG
TGGCCCGTCTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAG
GTGTTCTGCGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGG
CAAGAACATCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTT
TCCTGGACGCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGAT
TACACCGAGGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTA
CCAGTGCTCCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGG
AGAAGCTTGCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTAT
CTGGAGTTCTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGC
CTGCTCGGAGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGA
ACGCCGGTGAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGA
CAGGCGGTCATCACTCGCGAGCTGATTGAAATCATCTCCGGTGCCGCCGC
CCTCACAGCAAGCTTTCTAGACCAT
BO12571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-RC | 894 | CG7610-PC | 1..891 | 17..907 | 4440 | 99.9 | Plus |
ATPsyn-gamma-RB | 894 | CG7610-PB | 1..891 | 17..907 | 4440 | 99.9 | Plus |
ATPsyn-gamma-RA | 894 | CG7610-PA | 1..891 | 17..907 | 4440 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-RC | 1166 | CG7610-RC | 123..1013 | 17..907 | 4440 | 99.9 | Plus |
ATPsyn-gamma-RB | 1395 | CG7610-RB | 363..1253 | 17..907 | 4440 | 99.9 | Plus |
ATPsyn-gamma-RA | 1080 | CG7610-RA | 48..938 | 17..907 | 4440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29747857..29748747 | 907..17 | 4440 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:34:41 has no hits.
BO12571.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:23 Download gff for
BO12571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RC | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:17 Download gff for
BO12571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RC | 92..991 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:54 Download gff for
BO12571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 48..938 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:23 Download gff for
BO12571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RC | 92..991 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:27 Download gff for
BO12571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 48..938 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:27 Download gff for
BO12571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29747855..29748747 | 17..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:54 Download gff for
BO12571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25573577..25574469 | 17..909 | 99 | | Minus |
BO12571.pep Sequence
Translation from 16 to 925
> BO12571.pep
MMMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMK
MVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTS
DRGLCGAVHTGVARLIRGELAQDEANTKVFCVGDKSRAILSRLYGKNILM
VANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTL
PIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQS
SRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALTASF
LDH
BO12571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-PC | 297 | CG7610-PC | 1..297 | 1..297 | 1463 | 100 | Plus |
ATPsyn-gamma-PB | 297 | CG7610-PB | 1..297 | 1..297 | 1463 | 100 | Plus |
ATPsyn-gamma-PA | 297 | CG7610-PA | 1..297 | 1..297 | 1463 | 100 | Plus |