Clone BO12571 Report

Search the DGRC for BO12571

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-gamma-RA
Protein status:BO12571.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO12571.3prime Sequence

870 bp (823 high quality bases) assembled on 2006-05-08

> BO12571.3prime
ATGGTCTAGAAAGCTTGCTGTGAGGGCGGCGGCACCGGAGATGATTTCAA
TCAGCTCGCGAGTGATGACCGCCTGTCGGGTACGGTTGAAGGTGAGGGTC
AGCTTGTCGATCATCTCACCGGCGTTCTTGGAAGCGTTGTCCATGGCAGT
CATACGGGAGGACTGCTCCGAGCAGGCGCCCTCCTTCATGGTGTAGAAGA
TGAGCGAGGCCAGCGAGAACTCCAGATAGCTCTTGACCACGTCGCTGTCG
AGCGAGTCGTAGACGGCAAGCTTCTCCGACTTCTCCACGGTGGATCCGCT
GAAGATGGGGAGGGTGGAGCACTGGTAGGACACCACCGACTTGAAACGGT
TGTACACGATCTTGCCCTCGGTGTAATCGTAACCGGTCTGCAGAACCTCG
TTGGCAATCTTCGAGGCGTCCAGGAAAGTGGGGGGCAGTCGGCCCACCTC
GTTGGCCACCATCAGGATGTTCTTGCCGTACAGACGGGACAGAATCGCGC
GCGACTTGTCGCCCACGCAGAACACCTTAGTGTTGGCCTCGTCCTGGGCC
AGTTCGCCGCGAATGAGACGGGCCACACCAGTGTGGACGGCACCGCAAAG
ACCACGGTCCGAAGTCACTGCGATGAGCAGCTTCTTGGGCTCCGCCTTCT
CGTCCGGCTGGATCTCCGTCTTCTCGAAGAACTGCTGGGCGCCGATGCCG
TAAGGACGAGCCGCCTTCAAGTCTCGCTCGGCACGAGCGTACTTGGCAGC
GGACACCATCTTCATCGATTGCGTAATTTTCTGAATGTTCTTCACCGACT
TCAGGCGGATGGAAATCATCTTCAGGGTGGCCATGCCACGCTGCTGCTGG
GCCAGCATGGTGGCCTCCAT

BO12571.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7610-PA 894 ATPsyn-gamma-RA 40..891 870..19 4235 99.8 Minus
CG7610-PB 894 ATPsyn-gamma-RB 40..891 870..19 4235 99.8 Minus
CG7610-PC 894 ATPsyn-gamma-RC 40..891 870..19 4235 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RC 1166 CG7610-RC 162..1013 870..19 4245 99.9 Minus
ATPsyn-gamma-RB 1395 CG7610-RB 402..1253 870..19 4245 99.9 Minus
ATPsyn-gamma-RA 1080 CG7610-RA 87..938 870..19 4245 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29747857..29748708 19..870 4245 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 22:41:24 has no hits.

BO12571.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:37 Download gff for BO12571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7610-PC 40..894 15..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:47 Download gff for BO12571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7610-PC 40..894 15..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:50 Download gff for BO12571.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 87..943 13..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:51 Download gff for BO12571.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 87..943 13..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:51 Download gff for BO12571.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29747852..29748708 13..870 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:50 Download gff for BO12571.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25573574..25574430 13..870 99   Plus

BO12571.5prime Sequence

889 bp (842 high quality bases) assembled on 2006-05-08

> BO12571.5prime
GAAGTTATCAGTCGACATGATGATGCAACGCACCCAGCTCCTGCTGCCCC
TGGCCATGGAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACC
CTGAAGATGATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAAT
TACGCAATCGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGC
GAGACTTGAAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTC
GAGAAGACGGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCT
CATCGCAGTGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTG
TGGCCCGTCTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAG
GTGTTCTGCGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGG
CAAGAACATCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTT
TCCTGGACGCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGAT
TACACCGAGGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTA
CCAGTGCTCCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGG
AGAAGCTTGCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTAT
CTGGAGTTCTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGC
CTGCTCGGAGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGA
ACGCCGGTGAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGA
CAGGCGGTCATCACTCGCGAGCTGATTGAATCATCTCCG

BO12571.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7610-PA 894 ATPsyn-gamma-RA 1..864 17..880 4295 99.8 Plus
CG7610-PB 894 ATPsyn-gamma-RB 1..864 17..880 4295 99.8 Plus
CG7610-PC 894 ATPsyn-gamma-RC 1..864 17..880 4295 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RC 1166 CG7610-RC 123..996 17..889 4330 99.8 Plus
ATPsyn-gamma-RB 1395 CG7610-RB 363..1236 17..889 4330 99.8 Plus
ATPsyn-gamma-RA 1080 CG7610-RA 48..921 17..889 4330 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29747884..29748747 880..17 4305 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 17:00:48 has no hits.

BO12571.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:38 Download gff for BO12571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7610-PC 1..874 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:49 Download gff for BO12571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7610-PC 1..874 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:59 Download gff for BO12571.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 45..921 10..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:21 Download gff for BO12571.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 45..921 10..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:21 Download gff for BO12571.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29747874..29748745 19..889 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:59 Download gff for BO12571.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25573596..25574467 19..889 99 -> Minus

BO12571.complete Sequence

925 bp assembled on 2006-10-11

GenBank Submission: FJ638703

> BO12571.complete
GAAGTTATCAGTCGACATGATGATGCAACGCACCCAGCTCCTGCTGCCCC
TGGCCATGGAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACC
CTGAAGATGATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAAT
TACGCAATCGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGC
GAGACTTGAAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTC
GAGAAGACGGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCT
CATCGCAGTGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTG
TGGCCCGTCTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAG
GTGTTCTGCGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGG
CAAGAACATCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTT
TCCTGGACGCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGAT
TACACCGAGGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTA
CCAGTGCTCCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGG
AGAAGCTTGCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTAT
CTGGAGTTCTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGC
CTGCTCGGAGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGA
ACGCCGGTGAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGA
CAGGCGGTCATCACTCGCGAGCTGATTGAAATCATCTCCGGTGCCGCCGC
CCTCACAGCAAGCTTTCTAGACCAT

BO12571.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RC 894 CG7610-PC 1..891 17..907 4440 99.9 Plus
ATPsyn-gamma-RB 894 CG7610-PB 1..891 17..907 4440 99.9 Plus
ATPsyn-gamma-RA 894 CG7610-PA 1..891 17..907 4440 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RC 1166 CG7610-RC 123..1013 17..907 4440 99.9 Plus
ATPsyn-gamma-RB 1395 CG7610-RB 363..1253 17..907 4440 99.9 Plus
ATPsyn-gamma-RA 1080 CG7610-RA 48..938 17..907 4440 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29747857..29748747 907..17 4440 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 08:34:41 has no hits.

BO12571.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:23 Download gff for BO12571.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 1..894 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:17 Download gff for BO12571.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 92..991 9..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:54 Download gff for BO12571.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 48..938 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:23 Download gff for BO12571.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 92..991 9..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:27 Download gff for BO12571.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 48..938 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:27 Download gff for BO12571.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29747855..29748747 17..909 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:54 Download gff for BO12571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25573577..25574469 17..909 99   Minus

BO12571.pep Sequence

Translation from 16 to 925

> BO12571.pep
MMMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMK
MVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTS
DRGLCGAVHTGVARLIRGELAQDEANTKVFCVGDKSRAILSRLYGKNILM
VANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTL
PIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQS
SRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALTASF
LDH

BO12571.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-PC 297 CG7610-PC 1..297 1..297 1463 100 Plus
ATPsyn-gamma-PB 297 CG7610-PB 1..297 1..297 1463 100 Plus
ATPsyn-gamma-PA 297 CG7610-PA 1..297 1..297 1463 100 Plus