Clone BO12572 Report

Search the DGRC for BO12572

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG18549-RA
Protein status:BO12572.pep: validated full length
Sequenced Size:1342

Clone Sequence Records

BO12572.3prime Sequence

905 bp (805 high quality bases) assembled on 2006-05-08

> BO12572.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCAACGCCTCCTGCTCGCGGTGCTGCC
GCTTGAAGCCCCACTCTACGAAGACGAAGGCAATGGTGCCAATGGTTCCC
ATAACCACCAGGATGCCCAGCTGCACGTACAGCCCGAAGTGCGAGGAGTA
GAAGAAGCTAATGGCCGCCGCCACCGACTGGGTGAACTTGAACAGGGCAA
AGGCTCCCACGGCATTGTTCACATACTCCCCGCCAAGCATGGAGTAGATC
TGAGTGTTGAAACAGGCATCGCCCAGGCCCAAAAGGAAGGCACACACCAA
GGCGATGCTGGCTCGGGGCGGGTCCAGATAGGATATATCGGTGGTATCTT
TAAACGGTGCACTGTTCGGCAGGTTGATGAACGTCATGAAGAAGGCTGCC
ATGTGCATCACATAGCCGGCAATCACGATGGGATCGCGTCCATATCTCGT
CGTCTTGTTGCCCAGTATGCCGAATAGTCCTCCTCCAAAGACCTCGCCGG
CTCCAATGCAAATGCCCACCAGTCCAACGATCTCCTTCGGTGTTTCGGCT
ATTTTCGTGGTGAATCCAATCGCTGATCCAAAAACTCCGCTAAAGAATGA
CAGCTCCAGGCCTGTGTAAAAGAAGGCCAGACTAAGGAGCAGCATCTTTT
TGGTGAGGAACAATTGTCCTGCGGACTTCAATGCGTATATGGCCTGTCCA
CAGCCCGTGTGCTTCTGTTCCAGCTCGTTGTCGTGCTCGGCATTATCGGC
CATGAATCTCAGTGCGGCCAGAAACACGATGCCCAGCACAGCAATTACCG
TGAGCACGCCGATGACCAGATTCCGTGTCTCCTTGTCGATGCGGGTCTTG
TCCTGGAACTGATAGTACACGAACAGATTCCCAATGAACATGCTGCACTG
CAGCA

BO12572.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-PA 1311 CG18549-RA 422..1308 905..19 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-RA 2004 CG18549-RA 765..1651 905..19 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12455408..12456002 613..19 2975 100 Minus
3R 32079331 3R 12455049..12455343 905..611 1475 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:45:25 has no hits.

BO12572.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:39 Download gff for BO12572.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18549-PA 423..1311 15..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:50 Download gff for BO12572.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18549-PA 423..1311 15..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:40 Download gff for BO12572.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 766..1656 11..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:42 Download gff for BO12572.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 766..1656 11..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:42 Download gff for BO12572.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12455050..12455342 612..904 100 -> Minus
3R 12455410..12456007 11..611 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:40 Download gff for BO12572.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8280772..8281064 612..904 100 -> Minus
arm_3R 8281132..8281729 11..611 99   Minus

BO12572.5prime Sequence

885 bp (794 high quality bases) assembled on 2006-05-08

> BO12572.5prime
GAAGTTATCAGTCGACATGGATTTCAAATTCCTAATGATACTCATCCTGG
GCTTTGGCTTTATGTTCGTCTTTACGGCATTCCAGACCATGTGTAACATC
GAGAAAACCATACTGGATAGCATTTCCCAGGAAGATGATACCTTCAAGGG
TGAGGGCTACACCAGCCTGGCCATTATCTACCTGTTCTTCTCGCTCTCCA
ATTGGCTGGCACCCTCGTTCATTTCGTTCACCGGACCACGAGTGGCCATG
GTCGTGGGAGCACTGACCTATACAGCCTTCATGATCACGTTCATGTTCCC
GTCGACGGTATTGCTGTACGTGGGCAGCGCAGTGCTGGGATTGGGTGCCT
CGATCACTTGGACGGGACAGGGAACGTATCTGGCGCGCTGCAGTGAATCT
TCCACGATTTCCCGTAACTCTGGCGTCTTCTGGGCCCTGCTGCAGTGCAG
CATGTTCATTGGGAATCTGTTCGTGTACTATCAGTTCCAGGACAAGACCC
GCATCGACAAGGAGACACGGAATCTGGTCATCGGCGTGCTCACGGTAATT
GCTGTGCTGGGCATCGTGTTTCTGGCCGCACTGAGATTCATGGCCGATAA
TGCCGAGCACGACAACGAGCTGGAACAGAAGCACACGGGCTGTGGACAGG
CCATATACGCATTGAAGTCCGCAGGACAATTGTTCCTCACCAAAAAGATG
CTGCTCCTTAGTCTGGCCTTCTTTTACACAGGCCTGGAGCTGTCATTCTT
TAGCGGAGTTTTTGGATCAGCGATTGGATTCACCACGAAAATAGCCGAAA
CACCGAAGGAGATCGTTGGACTGGTGGGCATTTGCATTGGAGCCGGCGAG
GTCTTTGGAGGAGGACTATTCGGCATACTGGGCAA

BO12572.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-PA 1311 CG18549-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-RA 2004 CG18549-RA 344..1212 17..885 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12454885..12455343 274..732 2295 100 Plus
3R 32079331 3R 12454642..12454813 102..273 860 100 Plus
3R 32079331 3R 12455408..12455563 730..885 780 100 Plus
3R 32079331 3R 12449639..12449725 17..103 435 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:29:04 has no hits.

BO12572.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:40 Download gff for BO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18549-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:51 Download gff for BO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18549-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:55 Download gff for BO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 337..1210 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:26:24 Download gff for BO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 337..1210 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:26:24 Download gff for BO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12449632..12449725 9..103 95 -> Plus
3R 12454644..12454813 104..273 100 -> Plus
3R 12454885..12455342 274..731 100 -> Plus
3R 12455410..12455561 732..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:55 Download gff for BO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8275354..8275447 9..103 95 -> Plus
arm_3R 8280366..8280535 104..273 100 -> Plus
arm_3R 8280607..8281064 274..731 100 -> Plus
arm_3R 8281132..8281283 732..883 100   Plus

BO12572.complete Sequence

1342 bp assembled on 2006-10-11

GenBank Submission: FJ632494

> BO12572.complete
GAAGTTATCAGTCGACATGGATTTCAAATTCCTAATGATACTCATCCTGG
GCTTTGGCTTTATGTTCGTCTTTACGGCATTCCAGACCATGTGTAACATC
GAGAAAACCATACTGGATAGCATTTCCCAGGAAGATGATACCTTCAAGGG
TGAGGGCTACACCAGCCTGGCCATTATCTACCTGTTCTTCTCGCTCTCCA
ATTGGCTGGCACCCTCGTTCATTTCGTTCACCGGACCACGAGTGGCCATG
GTCGTGGGAGCACTGACCTATACAGCCTTCATGATCACGTTCATGTTCCC
GTCGACGGTATTGCTGTACGTGGGCAGCGCAGTGCTGGGATTGGGTGCCT
CGATCACTTGGACGGGACAGGGAACGTATCTGGCGCGCTGCAGTGAATCT
TCCACGATTTCCCGTAACTCTGGCGTCTTCTGGGCCCTGCTGCAGTGCAG
CATGTTCATTGGGAATCTGTTCGTGTACTATCAGTTCCAGGACAAGACCC
GCATCGACAAGGAGACACGGAATCTGGTCATCGGCGTGCTCACGGTAATT
GCTGTGCTGGGCATCGTGTTTCTGGCCGCACTGAGATTCATGGCCGATAA
TGCCGAGCACGACAACGAGCTGGAACAGAAGCACACGGGCTGTGGACAGG
CCATATACGCATTGAAGTCCGCAGGACAATTGTTCCTCACCAAAAAGATG
CTGCTCCTTAGTCTGGCCTTCTTTTACACAGGCCTGGAGCTGTCATTCTT
TAGCGGAGTTTTTGGATCAGCGATTGGATTCACCACGAAAATAGCCGAAA
CACCGAAGGAGATCGTTGGACTGGTGGGCATTTGCATTGGAGCCGGCGAG
GTCTTTGGAGGAGGACTATTCGGCATACTGGGCAACAAGACGACGAGATA
TGGACGCGATCCCATCGTGATTGCCGGCTATGTGATGCACATGGCAGCCT
TCTTCATGACGTTCATCAACCTGCCGAACAGTGCACCGTTTAAAGATACC
ACCGATATATCCTATCTGGACCCGCCCCGAGCCAGCATCGCCTTGGTGTG
TGCCTTCCTTTTGGGCCTGGGCGATGCCTGTTTCAACACTCAGATCTACT
CCATGCTTGGCGGGGAGTATGTGAACAATGCCGTGGGAGCCTTTGCCCTG
TTCAAGTTCACCCAGTCGGTGGCGGCGGCCATTAGCTTCTTCTACTCCTC
GCACTTCGGGCTGTACGTGCAGCTGGGCATCCTGGTGGTTATGGGAACCA
TTGGCACCATTGCCTTCGTCTTCGTAGAGTGGGGCTTCAAGCGGCAGCAC
CGCGAGCAGGAGGCGTTGGAGAAGGCAAGCTTTCTAGACCAT

BO12572.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-RA 1311 CG18549-PA 1..1308 17..1324 6540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-RA 2004 CG18549-RA 344..1651 17..1324 6540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12455408..12456002 730..1324 2975 100 Plus
3R 32079331 3R 12454885..12455343 274..732 2295 100 Plus
3R 32079331 3R 12454642..12454813 102..273 860 100 Plus
3R 32079331 3R 12449639..12449725 17..103 435 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:53:06 has no hits.

BO12572.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:25 Download gff for BO12572.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..1311 17..1328 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:21 Download gff for BO12572.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 337..1656 9..1332 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:18 Download gff for BO12572.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 344..1651 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:25 Download gff for BO12572.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 337..1656 9..1332 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:15 Download gff for BO12572.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 344..1651 17..1326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:15 Download gff for BO12572.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12449639..12449725 17..103 100 -> Plus
3R 12454644..12454813 104..273 100 -> Plus
3R 12454885..12455342 274..731 100 -> Plus
3R 12455410..12456002 732..1326 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:18 Download gff for BO12572.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8275361..8275447 17..103 100 -> Plus
arm_3R 8280366..8280535 104..273 100 -> Plus
arm_3R 8280607..8281064 274..731 100 -> Plus
arm_3R 8281132..8281724 732..1326 99   Plus

BO12572.pep Sequence

Translation from 16 to 1342

> BO12572.pep
MDFKFLMILILGFGFMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTS
LAIIYLFFSLSNWLAPSFISFTGPRVAMVVGALTYTAFMITFMFPSTVLL
YVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQCSMFIGN
LFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDN
ELEQKHTGCGQAIYALKSAGQLFLTKKMLLLSLAFFYTGLELSFFSGVFG
SAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTRYGRDPI
VIAGYVMHMAAFFMTFINLPNSAPFKDTTDISYLDPPRASIALVCAFLLG
LGDACFNTQIYSMLGGEYVNNAVGAFALFKFTQSVAAAISFFYSSHFGLY
VQLGILVVMGTIGTIAFVFVEWGFKRQHREQEALEKASFLDH

BO12572.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-PA 436 CG18549-PA 1..436 1..436 2235 100 Plus
CG4928-PB 538 CG4928-PB 46..494 8..437 214 23.3 Plus
CG4928-PA 538 CG4928-PA 46..494 8..437 214 23.3 Plus