Clone Sequence Records
BO12572.3prime Sequence
905 bp (805 high quality bases) assembled on 2006-05-08
> BO12572.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCAACGCCTCCTGCTCGCGGTGCTGCC
GCTTGAAGCCCCACTCTACGAAGACGAAGGCAATGGTGCCAATGGTTCCC
ATAACCACCAGGATGCCCAGCTGCACGTACAGCCCGAAGTGCGAGGAGTA
GAAGAAGCTAATGGCCGCCGCCACCGACTGGGTGAACTTGAACAGGGCAA
AGGCTCCCACGGCATTGTTCACATACTCCCCGCCAAGCATGGAGTAGATC
TGAGTGTTGAAACAGGCATCGCCCAGGCCCAAAAGGAAGGCACACACCAA
GGCGATGCTGGCTCGGGGCGGGTCCAGATAGGATATATCGGTGGTATCTT
TAAACGGTGCACTGTTCGGCAGGTTGATGAACGTCATGAAGAAGGCTGCC
ATGTGCATCACATAGCCGGCAATCACGATGGGATCGCGTCCATATCTCGT
CGTCTTGTTGCCCAGTATGCCGAATAGTCCTCCTCCAAAGACCTCGCCGG
CTCCAATGCAAATGCCCACCAGTCCAACGATCTCCTTCGGTGTTTCGGCT
ATTTTCGTGGTGAATCCAATCGCTGATCCAAAAACTCCGCTAAAGAATGA
CAGCTCCAGGCCTGTGTAAAAGAAGGCCAGACTAAGGAGCAGCATCTTTT
TGGTGAGGAACAATTGTCCTGCGGACTTCAATGCGTATATGGCCTGTCCA
CAGCCCGTGTGCTTCTGTTCCAGCTCGTTGTCGTGCTCGGCATTATCGGC
CATGAATCTCAGTGCGGCCAGAAACACGATGCCCAGCACAGCAATTACCG
TGAGCACGCCGATGACCAGATTCCGTGTCTCCTTGTCGATGCGGGTCTTG
TCCTGGAACTGATAGTACACGAACAGATTCCCAATGAACATGCTGCACTG
CAGCA
BO12572.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18549-PA | 1311 | CG18549-RA | 422..1308 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18549-RA | 2004 | CG18549-RA | 765..1651 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12455408..12456002 | 613..19 | 2975 | 100 | Minus |
3R | 32079331 | 3R | 12455049..12455343 | 905..611 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:45:25 has no hits.
BO12572.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:39 Download gff for
BO12572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-PA | 423..1311 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:50 Download gff for
BO12572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-PA | 423..1311 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:40 Download gff for
BO12572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 766..1656 | 11..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:42 Download gff for
BO12572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 766..1656 | 11..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:42 Download gff for
BO12572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12455050..12455342 | 612..904 | 100 | -> | Minus |
3R | 12455410..12456007 | 11..611 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:40 Download gff for
BO12572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8280772..8281064 | 612..904 | 100 | -> | Minus |
arm_3R | 8281132..8281729 | 11..611 | 99 | | Minus |
BO12572.5prime Sequence
885 bp (794 high quality bases) assembled on 2006-05-08
> BO12572.5prime
GAAGTTATCAGTCGACATGGATTTCAAATTCCTAATGATACTCATCCTGG
GCTTTGGCTTTATGTTCGTCTTTACGGCATTCCAGACCATGTGTAACATC
GAGAAAACCATACTGGATAGCATTTCCCAGGAAGATGATACCTTCAAGGG
TGAGGGCTACACCAGCCTGGCCATTATCTACCTGTTCTTCTCGCTCTCCA
ATTGGCTGGCACCCTCGTTCATTTCGTTCACCGGACCACGAGTGGCCATG
GTCGTGGGAGCACTGACCTATACAGCCTTCATGATCACGTTCATGTTCCC
GTCGACGGTATTGCTGTACGTGGGCAGCGCAGTGCTGGGATTGGGTGCCT
CGATCACTTGGACGGGACAGGGAACGTATCTGGCGCGCTGCAGTGAATCT
TCCACGATTTCCCGTAACTCTGGCGTCTTCTGGGCCCTGCTGCAGTGCAG
CATGTTCATTGGGAATCTGTTCGTGTACTATCAGTTCCAGGACAAGACCC
GCATCGACAAGGAGACACGGAATCTGGTCATCGGCGTGCTCACGGTAATT
GCTGTGCTGGGCATCGTGTTTCTGGCCGCACTGAGATTCATGGCCGATAA
TGCCGAGCACGACAACGAGCTGGAACAGAAGCACACGGGCTGTGGACAGG
CCATATACGCATTGAAGTCCGCAGGACAATTGTTCCTCACCAAAAAGATG
CTGCTCCTTAGTCTGGCCTTCTTTTACACAGGCCTGGAGCTGTCATTCTT
TAGCGGAGTTTTTGGATCAGCGATTGGATTCACCACGAAAATAGCCGAAA
CACCGAAGGAGATCGTTGGACTGGTGGGCATTTGCATTGGAGCCGGCGAG
GTCTTTGGAGGAGGACTATTCGGCATACTGGGCAA
BO12572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18549-PA | 1311 | CG18549-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18549-RA | 2004 | CG18549-RA | 344..1212 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12454885..12455343 | 274..732 | 2295 | 100 | Plus |
3R | 32079331 | 3R | 12454642..12454813 | 102..273 | 860 | 100 | Plus |
3R | 32079331 | 3R | 12455408..12455563 | 730..885 | 780 | 100 | Plus |
3R | 32079331 | 3R | 12449639..12449725 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:29:04 has no hits.
BO12572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:40 Download gff for
BO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:51 Download gff for
BO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:55 Download gff for
BO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 337..1210 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:26:24 Download gff for
BO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 337..1210 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:26:24 Download gff for
BO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12449632..12449725 | 9..103 | 95 | -> | Plus |
3R | 12454644..12454813 | 104..273 | 100 | -> | Plus |
3R | 12454885..12455342 | 274..731 | 100 | -> | Plus |
3R | 12455410..12455561 | 732..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:55 Download gff for
BO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8275354..8275447 | 9..103 | 95 | -> | Plus |
arm_3R | 8280366..8280535 | 104..273 | 100 | -> | Plus |
arm_3R | 8280607..8281064 | 274..731 | 100 | -> | Plus |
arm_3R | 8281132..8281283 | 732..883 | 100 | | Plus |
BO12572.complete Sequence
1342 bp assembled on 2006-10-11
GenBank Submission: FJ632494
> BO12572.complete
GAAGTTATCAGTCGACATGGATTTCAAATTCCTAATGATACTCATCCTGG
GCTTTGGCTTTATGTTCGTCTTTACGGCATTCCAGACCATGTGTAACATC
GAGAAAACCATACTGGATAGCATTTCCCAGGAAGATGATACCTTCAAGGG
TGAGGGCTACACCAGCCTGGCCATTATCTACCTGTTCTTCTCGCTCTCCA
ATTGGCTGGCACCCTCGTTCATTTCGTTCACCGGACCACGAGTGGCCATG
GTCGTGGGAGCACTGACCTATACAGCCTTCATGATCACGTTCATGTTCCC
GTCGACGGTATTGCTGTACGTGGGCAGCGCAGTGCTGGGATTGGGTGCCT
CGATCACTTGGACGGGACAGGGAACGTATCTGGCGCGCTGCAGTGAATCT
TCCACGATTTCCCGTAACTCTGGCGTCTTCTGGGCCCTGCTGCAGTGCAG
CATGTTCATTGGGAATCTGTTCGTGTACTATCAGTTCCAGGACAAGACCC
GCATCGACAAGGAGACACGGAATCTGGTCATCGGCGTGCTCACGGTAATT
GCTGTGCTGGGCATCGTGTTTCTGGCCGCACTGAGATTCATGGCCGATAA
TGCCGAGCACGACAACGAGCTGGAACAGAAGCACACGGGCTGTGGACAGG
CCATATACGCATTGAAGTCCGCAGGACAATTGTTCCTCACCAAAAAGATG
CTGCTCCTTAGTCTGGCCTTCTTTTACACAGGCCTGGAGCTGTCATTCTT
TAGCGGAGTTTTTGGATCAGCGATTGGATTCACCACGAAAATAGCCGAAA
CACCGAAGGAGATCGTTGGACTGGTGGGCATTTGCATTGGAGCCGGCGAG
GTCTTTGGAGGAGGACTATTCGGCATACTGGGCAACAAGACGACGAGATA
TGGACGCGATCCCATCGTGATTGCCGGCTATGTGATGCACATGGCAGCCT
TCTTCATGACGTTCATCAACCTGCCGAACAGTGCACCGTTTAAAGATACC
ACCGATATATCCTATCTGGACCCGCCCCGAGCCAGCATCGCCTTGGTGTG
TGCCTTCCTTTTGGGCCTGGGCGATGCCTGTTTCAACACTCAGATCTACT
CCATGCTTGGCGGGGAGTATGTGAACAATGCCGTGGGAGCCTTTGCCCTG
TTCAAGTTCACCCAGTCGGTGGCGGCGGCCATTAGCTTCTTCTACTCCTC
GCACTTCGGGCTGTACGTGCAGCTGGGCATCCTGGTGGTTATGGGAACCA
TTGGCACCATTGCCTTCGTCTTCGTAGAGTGGGGCTTCAAGCGGCAGCAC
CGCGAGCAGGAGGCGTTGGAGAAGGCAAGCTTTCTAGACCAT
BO12572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18549-RA | 1311 | CG18549-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18549-RA | 2004 | CG18549-RA | 344..1651 | 17..1324 | 6540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12455408..12456002 | 730..1324 | 2975 | 100 | Plus |
3R | 32079331 | 3R | 12454885..12455343 | 274..732 | 2295 | 100 | Plus |
3R | 32079331 | 3R | 12454642..12454813 | 102..273 | 860 | 100 | Plus |
3R | 32079331 | 3R | 12449639..12449725 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:53:06 has no hits.
BO12572.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:25 Download gff for
BO12572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 1..1311 | 17..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:21 Download gff for
BO12572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 337..1656 | 9..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:18 Download gff for
BO12572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 344..1651 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:25 Download gff for
BO12572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 337..1656 | 9..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:15 Download gff for
BO12572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18549-RA | 344..1651 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:15 Download gff for
BO12572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12449639..12449725 | 17..103 | 100 | -> | Plus |
3R | 12454644..12454813 | 104..273 | 100 | -> | Plus |
3R | 12454885..12455342 | 274..731 | 100 | -> | Plus |
3R | 12455410..12456002 | 732..1326 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:18 Download gff for
BO12572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8275361..8275447 | 17..103 | 100 | -> | Plus |
arm_3R | 8280366..8280535 | 104..273 | 100 | -> | Plus |
arm_3R | 8280607..8281064 | 274..731 | 100 | -> | Plus |
arm_3R | 8281132..8281724 | 732..1326 | 99 | | Plus |
BO12572.pep Sequence
Translation from 16 to 1342
> BO12572.pep
MDFKFLMILILGFGFMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTS
LAIIYLFFSLSNWLAPSFISFTGPRVAMVVGALTYTAFMITFMFPSTVLL
YVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQCSMFIGN
LFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDN
ELEQKHTGCGQAIYALKSAGQLFLTKKMLLLSLAFFYTGLELSFFSGVFG
SAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTRYGRDPI
VIAGYVMHMAAFFMTFINLPNSAPFKDTTDISYLDPPRASIALVCAFLLG
LGDACFNTQIYSMLGGEYVNNAVGAFALFKFTQSVAAAISFFYSSHFGLY
VQLGILVVMGTIGTIAFVFVEWGFKRQHREQEALEKASFLDH
BO12572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18549-PA | 436 | CG18549-PA | 1..436 | 1..436 | 2235 | 100 | Plus |
CG4928-PB | 538 | CG4928-PB | 46..494 | 8..437 | 214 | 23.3 | Plus |
CG4928-PA | 538 | CG4928-PA | 46..494 | 8..437 | 214 | 23.3 | Plus |